Wall clock time and date at job start Tue Mar 31 2020 11:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36225 * 120.06219 * 2 1 4 4 C 1.39991 * 120.11723 * 180.25014 * 3 2 1 5 5 C 1.47853 * 119.88460 * 179.75787 * 4 3 2 6 6 C 1.39749 * 120.02304 * 359.44969 * 5 4 3 7 7 C 1.37630 * 119.97517 * 180.25507 * 6 5 4 8 8 C 1.39565 * 120.02524 * 0.04472 * 7 6 5 9 9 C 1.48202 * 119.98094 * 179.97438 * 8 7 6 10 10 C 1.39425 * 119.73292 * 359.70428 * 9 8 7 11 11 C 1.38383 * 119.06033 * 179.73308 * 10 9 8 12 12 C 1.38800 * 118.51892 * 0.53070 * 11 10 9 13 13 C 1.38287 * 119.37593 * 359.73177 * 12 11 10 14 14 N 1.31734 * 120.90000 * 359.97438 * 13 12 11 15 15 C 1.39580 * 120.04093 * 359.95748 * 8 7 6 16 16 C 1.37617 * 120.01995 * 0.02562 * 15 8 7 17 17 C 1.40021 * 120.22730 * 359.48522 * 4 3 2 18 18 C 1.36202 * 120.11425 * 0.23051 * 17 4 3 19 19 C 1.40935 * 120.05481 * 179.71227 * 2 1 3 20 20 C 1.40978 * 120.11636 * 0.02562 * 19 2 1 21 21 H 1.08004 * 119.99828 * 333.70690 * 20 19 2 22 22 C 1.40028 * 120.00284 * 153.70238 * 20 19 2 23 23 N 1.30778 * 119.99782 * 343.38422 * 22 20 19 24 24 Si 1.86799 * 119.99887 * 163.38351 * 22 20 19 25 25 H 1.48500 * 109.47139 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47087 * 120.00232 * 24 22 20 27 27 H 1.48500 * 109.46954 * 240.00223 * 24 22 20 28 28 H 1.09004 * 109.47475 * 270.29195 * 1 2 3 29 29 H 1.09008 * 109.46867 * 30.28182 * 1 2 3 30 30 H 1.08997 * 109.47495 * 150.27992 * 1 2 3 31 31 H 1.08005 * 119.94537 * 0.02562 * 3 2 1 32 32 H 1.08000 * 120.01031 * 0.25399 * 6 5 4 33 33 H 1.08006 * 119.98476 * 180.02562 * 7 6 5 34 34 H 1.07994 * 120.46955 * 359.97438 * 10 9 8 35 35 H 1.08006 * 120.74189 * 180.26582 * 11 10 9 36 36 H 1.07994 * 120.31124 * 179.70749 * 12 11 10 37 37 H 1.08002 * 119.55060 * 179.97438 * 13 12 11 38 38 H 1.08003 * 119.98522 * 180.02562 * 15 8 7 39 39 H 1.08001 * 120.01214 * 180.02562 * 16 15 8 40 40 H 1.07997 * 119.94525 * 180.25508 * 17 4 3 41 41 H 1.07999 * 120.05896 * 180.02562 * 18 17 4 42 42 H 0.97003 * 120.00325 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1894 1.1790 0.0000 4 6 3.5893 1.1804 -0.0053 5 6 4.3247 2.4630 -0.0107 6 6 3.6229 3.6714 -0.0221 7 6 4.3085 4.8647 -0.0324 8 6 5.7041 4.8683 -0.0324 9 6 6.4414 6.1539 -0.0441 10 6 5.7351 7.3559 -0.0613 11 6 6.4376 8.5482 -0.0665 12 6 7.8247 8.5002 -0.0655 13 6 8.4609 7.2724 -0.0538 14 7 7.7685 6.1517 -0.0432 15 6 6.4060 3.6619 -0.0210 16 6 5.7223 2.4676 -0.0104 17 6 4.2954 -0.0288 0.0003 18 6 3.6226 -1.2130 0.0061 19 6 2.2128 -1.2198 0.0061 20 6 1.5116 -2.4428 0.0117 21 1 0.5154 -2.4922 0.4259 22 6 2.1066 -3.5936 -0.5198 23 7 3.1498 -3.4888 -1.3015 24 14 1.4104 -5.2784 -0.1121 25 1 0.2380 -5.1253 0.7864 26 1 0.9897 -5.9563 -1.3645 27 1 2.4504 -6.0928 0.5664 28 1 -0.3634 0.0052 1.0277 29 1 -0.3633 0.8875 -0.5182 30 1 -0.3634 -0.8924 -0.5095 31 1 1.6495 2.1144 0.0004 32 1 2.5429 3.6688 -0.0229 33 1 3.7662 5.7987 -0.0409 34 1 4.6552 7.3565 -0.0666 35 1 5.9180 9.4951 -0.0754 36 1 8.4017 9.4130 -0.0741 37 1 9.5402 7.2317 -0.0534 38 1 7.4860 3.6657 -0.0206 39 1 6.2655 1.5342 -0.0012 40 1 5.3754 -0.0224 0.0003 41 1 4.1681 -2.1451 0.0108 42 1 3.5623 -4.2859 -1.6695 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241974802.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:07 Heat of formation + Delta-G solvation = 54.654301 kcal Electronic energy + Delta-G solvation = -23535.938870 eV Core-core repulsion = 20216.009536 eV Total energy + Delta-G solvation = -3319.929334 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.22629 -40.23513 -38.97755 -35.80587 -34.28075 -33.48506 -32.96342 -32.06855 -31.40154 -29.72870 -27.96232 -26.65764 -24.81726 -24.68798 -23.25817 -22.79403 -21.68104 -20.83064 -19.19541 -18.53935 -17.34875 -17.21204 -16.87930 -16.73139 -15.91992 -15.80172 -15.29598 -15.07279 -14.87385 -14.79373 -14.43448 -14.41876 -14.35539 -13.89541 -13.65317 -13.51298 -13.44913 -13.01907 -12.85157 -12.82760 -12.61205 -12.40150 -12.27525 -12.00306 -11.92117 -11.34443 -11.17919 -11.08469 -10.85166 -10.59828 -10.34424 -9.84255 -9.58591 -9.27745 -8.74602 -8.51039 -6.28935 -0.44430 0.37963 0.55287 0.59021 1.16502 1.23626 1.38342 1.53016 1.59620 2.17428 2.58929 2.90723 3.24864 3.27152 3.74150 3.75972 4.01675 4.07686 4.09677 4.16750 4.23001 4.27548 4.38308 4.49547 4.58220 4.67561 4.68723 4.74277 4.84317 4.94590 5.04565 5.07430 5.10964 5.18041 5.20232 5.28901 5.31014 5.36580 5.43921 5.51400 5.66168 5.70422 5.76572 5.85481 5.97615 6.12843 6.18507 6.29091 6.34048 6.65020 6.88216 7.01895 7.08892 8.25461 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.034374 B = 0.002363 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.381927 B =11844.338987 C =12573.379801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.217 4.217 3 C -0.068 4.068 4 C -0.202 4.202 5 C 0.008 3.992 6 C -0.148 4.148 7 C -0.082 4.082 8 C -0.098 4.098 9 C 0.153 3.847 10 C -0.175 4.175 11 C -0.072 4.072 12 C -0.177 4.177 13 C 0.087 3.913 14 N -0.518 5.518 15 C -0.076 4.076 16 C -0.158 4.158 17 C -0.090 4.090 18 C -0.194 4.194 19 C 0.090 3.910 20 C -0.473 4.473 21 H 0.087 0.913 22 C 0.032 3.968 23 N -0.815 5.815 24 Si 0.982 3.018 25 H -0.254 1.254 26 H -0.266 1.266 27 H -0.267 1.267 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.123 0.877 32 H 0.137 0.863 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.169 0.831 36 H 0.167 0.833 37 H 0.176 0.824 38 H 0.128 0.872 39 H 0.118 0.882 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.145 18.879 1.811 19.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.218 4.218 3 C -0.086 4.086 4 C -0.203 4.203 5 C 0.007 3.993 6 C -0.166 4.166 7 C -0.100 4.100 8 C -0.099 4.099 9 C 0.018 3.982 10 C -0.194 4.194 11 C -0.097 4.097 12 C -0.196 4.196 13 C -0.071 4.071 14 N -0.227 5.227 15 C -0.095 4.095 16 C -0.176 4.176 17 C -0.108 4.108 18 C -0.213 4.213 19 C 0.087 3.913 20 C -0.501 4.501 21 H 0.105 0.895 22 C -0.185 4.185 23 N -0.440 5.440 24 Si 0.803 3.197 25 H -0.177 1.177 26 H -0.190 1.190 27 H -0.191 1.191 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.141 0.859 32 H 0.155 0.845 33 H 0.172 0.828 34 H 0.171 0.829 35 H 0.186 0.814 36 H 0.185 0.815 37 H 0.193 0.807 38 H 0.146 0.854 39 H 0.136 0.864 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.751 17.952 1.663 18.644 hybrid contribution -0.181 -0.619 -0.062 0.648 sum 4.570 17.333 1.601 17.996 Atomic orbital electron populations 1.20396 0.91098 1.01380 1.00778 1.19913 0.96487 0.92793 1.12615 1.20600 0.92882 0.96963 0.98122 1.18420 0.93132 0.91351 1.17370 1.19163 0.92990 0.92856 0.94252 1.21284 1.00556 0.91156 1.03590 1.21285 0.92436 0.98619 0.97676 1.18654 0.93114 0.91303 1.06783 1.19897 0.89504 0.92812 0.95952 1.22371 1.02557 0.92359 1.02157 1.21976 0.94595 0.99025 0.94142 1.22561 0.95772 1.00093 1.01217 1.23226 1.01378 0.87692 0.94759 1.67583 1.08188 1.33205 1.13762 1.21156 1.00159 0.91248 0.96915 1.21247 0.93731 0.98229 1.04436 1.20743 0.98194 0.92596 0.99295 1.20949 0.94960 0.96599 1.08814 1.17982 0.92255 0.93149 0.87922 1.19937 1.02554 0.93253 1.34327 0.89472 1.26890 0.94324 1.05293 0.91956 1.69873 1.19126 1.33379 1.21643 0.85143 0.79423 0.75852 0.79286 1.17682 1.19048 1.19137 0.92614 0.91810 0.92989 0.85917 0.84529 0.82801 0.82868 0.81399 0.81517 0.80704 0.85365 0.86421 0.87904 0.88265 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.12 9.39 71.24 0.67 -2.45 16 2 C -0.22 -10.22 5.90 -19.67 -0.12 -10.33 16 3 C -0.07 -2.96 8.99 22.23 0.20 -2.76 16 4 C -0.20 -9.05 5.90 -19.87 -0.12 -9.17 16 5 C 0.01 0.30 5.88 -20.00 -0.12 0.19 16 6 C -0.15 -4.80 9.41 22.49 0.21 -4.59 16 7 C -0.08 -2.26 9.40 22.45 0.21 -2.05 16 8 C -0.10 -2.97 5.88 -19.98 -0.12 -3.09 16 9 C 0.15 4.10 6.73 41.95 0.28 4.38 16 10 C -0.17 -3.41 9.46 22.59 0.21 -3.20 16 11 C -0.07 -1.01 10.16 22.44 0.23 -0.79 16 12 C -0.18 -2.43 10.11 22.42 0.23 -2.21 16 13 C 0.09 1.66 11.17 84.72 0.95 2.61 16 14 N -0.52 -13.95 9.42 -184.86 -1.74 -15.69 16 15 C -0.08 -2.56 9.56 22.45 0.21 -2.35 16 16 C -0.16 -5.87 9.41 22.49 0.21 -5.66 16 17 C -0.09 -4.36 9.35 22.23 0.21 -4.15 16 18 C -0.19 -10.33 8.61 22.47 0.19 -10.13 16 19 C 0.09 4.74 5.56 -21.28 -0.12 4.63 16 20 C -0.47 -24.40 8.09 23.38 0.19 -24.21 16 21 H 0.09 4.27 6.88 -2.91 -0.02 4.25 16 22 C 0.03 1.55 5.15 85.28 0.44 1.99 16 23 N -0.82 -42.03 10.99 21.84 0.24 -41.79 16 24 Si 0.98 37.00 29.59 68.60 2.03 39.03 16 25 H -0.25 -9.24 7.11 99.48 0.71 -8.53 16 26 H -0.27 -9.61 7.11 99.48 0.71 -8.91 16 27 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 28 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 29 H 0.06 2.12 8.08 -2.38 -0.02 2.10 16 30 H 0.05 2.10 6.77 -2.39 -0.02 2.09 16 31 H 0.12 4.49 6.16 -2.91 -0.02 4.47 16 32 H 0.14 3.96 6.16 -2.91 -0.02 3.94 16 33 H 0.15 3.03 6.16 -2.91 -0.02 3.01 16 34 H 0.15 2.30 6.18 -2.91 -0.02 2.28 16 35 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 36 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 37 H 0.18 2.31 8.06 -2.91 -0.02 2.28 16 38 H 0.13 4.14 7.52 -2.91 -0.02 4.12 16 39 H 0.12 4.32 6.16 -2.91 -0.02 4.31 16 40 H 0.10 4.58 6.16 -2.91 -0.02 4.56 16 41 H 0.10 5.51 6.23 -2.91 -0.02 5.50 16 42 H 0.29 13.47 8.30 -92.71 -0.77 12.71 16 Total: -1.00 -64.17 348.53 5.65 -58.53 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: 1.06 Total: 33.25 kcal Atomic # 6 Polarization: -77.39 SS G_CDS: 4.06 Total: -73.34 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -1.50 Total: -57.48 kcal Atomic # 14 Polarization: 37.00 SS G_CDS: 2.03 Total: 39.03 kcal Total: -64.17 5.65 -58.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241974802.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.180 kcal (2) G-P(sol) polarization free energy of solvation -64.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds