Wall clock time and date at job start Tue Mar 31 2020 11:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37871 * 119.97278 * 2 1 4 4 C 1.39430 * 119.94881 * 180.02562 * 3 2 1 5 5 C 1.48245 * 120.05473 * 179.97438 * 4 3 2 6 6 C 1.39316 * 120.13517 * 309.72353 * 5 4 3 7 7 C 1.37973 * 119.96549 * 179.67467 * 6 5 4 8 8 C 1.38683 * 120.24581 * 0.62252 * 7 6 5 9 9 F 1.35103 * 119.85841 * 179.69850 * 8 7 6 10 10 C 1.38331 * 120.27444 * 359.67655 * 8 7 6 11 11 C 1.38704 * 120.02972 * 359.97438 * 10 8 7 12 12 O 1.35669 * 120.11902 * 180.02562 * 11 10 8 13 13 C 1.34812 * 117.00610 * 354.39814 * 12 11 10 14 14 H 1.07998 * 119.99483 * 5.06492 * 13 12 11 15 15 C 1.38625 * 120.00292 * 185.06474 * 13 12 11 16 16 N 1.31570 * 120.00037 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00077 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47232 * 60.00122 * 17 15 13 19 19 H 1.48497 * 109.47202 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47182 * 299.99740 * 17 15 13 21 21 C 1.39476 * 119.89778 * 359.97438 * 4 3 2 22 22 C 1.37840 * 119.94323 * 359.75236 * 21 4 3 23 23 C 1.38999 * 119.97489 * 180.02562 * 2 1 3 24 24 N 1.39604 * 119.94901 * 359.97438 * 23 2 1 25 25 C 1.46896 * 111.00245 * 240.00600 * 24 23 2 26 26 C 1.46901 * 111.00086 * 116.04679 * 24 23 2 27 27 H 1.09002 * 109.46912 * 269.97705 * 1 2 3 28 28 H 1.08999 * 109.46835 * 29.98254 * 1 2 3 29 29 H 1.08998 * 109.46713 * 149.97773 * 1 2 3 30 30 H 1.08000 * 120.02565 * 0.02562 * 3 2 1 31 31 H 1.08002 * 120.01580 * 359.97438 * 6 5 4 32 32 H 1.08005 * 119.88101 * 180.29774 * 7 6 5 33 33 H 1.08005 * 119.98230 * 180.02562 * 10 8 7 34 34 H 0.97006 * 120.00070 * 180.02562 * 16 15 13 35 35 H 1.07995 * 120.03342 * 179.97438 * 21 4 3 36 36 H 1.08001 * 119.97416 * 180.24727 * 22 21 4 37 37 H 1.08996 * 109.47524 * 60.00024 * 25 24 23 38 38 H 1.09004 * 109.46934 * 299.99530 * 25 24 23 39 39 H 1.09001 * 109.47065 * 180.02562 * 25 24 23 40 40 H 1.08992 * 109.47690 * 180.02562 * 26 24 23 41 41 H 1.09001 * 109.46943 * 300.00582 * 26 24 23 42 42 H 1.09001 * 109.46639 * 59.99754 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1959 1.1943 0.0000 4 6 3.5902 1.1937 -0.0005 5 6 4.3331 2.4766 -0.0011 6 6 4.0170 3.4675 -0.9279 7 6 4.7062 4.6627 -0.9210 8 6 5.7227 4.8776 -0.0024 9 9 6.3966 6.0486 -0.0065 10 6 6.0492 3.8982 0.9184 11 6 5.3589 2.6952 0.9263 12 8 5.6772 1.7336 1.8289 13 6 6.7489 1.9618 2.6142 14 1 7.2616 2.9110 2.5655 15 6 7.1929 0.9780 3.4841 16 7 6.5680 -0.1783 3.5437 17 14 8.6784 1.2939 4.5717 18 1 8.4075 2.4573 5.4540 19 1 8.9466 0.0939 5.4042 20 1 9.8617 1.5820 3.7220 21 6 4.2849 -0.0157 -0.0005 22 6 3.5919 -1.2072 0.0052 23 6 2.2015 -1.2041 -0.0005 24 7 1.5019 -2.4121 -0.0005 25 6 1.8318 -3.2116 1.1869 26 6 1.7587 -3.1692 -1.2329 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8901 -0.5136 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6558 2.1296 0.0004 31 1 3.2296 3.3021 -1.6483 32 1 4.4568 5.4319 -1.6370 33 1 6.8414 4.0708 1.6319 34 1 6.8784 -0.8666 4.1527 35 1 5.3648 -0.0187 -0.0014 36 1 4.1293 -2.1440 0.0092 37 1 1.5667 -2.6543 2.0853 38 1 2.9004 -3.4266 1.1947 39 1 1.2735 -4.1474 1.1614 40 1 1.2013 -4.1055 -1.2071 41 1 1.4405 -2.5810 -2.0937 42 1 2.8247 -3.3826 -1.3127 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242242378.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:48 Heat of formation + Delta-G solvation = -16.804683 kcal Electronic energy + Delta-G solvation = -25867.114565 eV Core-core repulsion = 22113.317313 eV Total energy + Delta-G solvation = -3753.797252 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.33804 -39.83123 -38.94178 -36.68171 -35.87294 -32.58808 -32.34653 -30.97071 -29.35290 -27.88746 -27.47648 -26.48322 -25.50224 -24.18893 -22.07053 -21.76672 -21.09906 -19.75820 -18.33257 -17.45396 -16.54155 -15.85190 -15.53320 -15.25213 -15.17246 -15.00409 -14.88342 -14.31542 -14.04101 -13.69025 -13.52937 -13.38616 -13.33901 -13.09155 -12.78973 -12.51890 -12.32371 -12.31032 -11.88428 -11.79943 -11.63207 -11.60360 -11.41498 -11.18337 -10.90611 -10.77139 -10.66252 -10.58537 -10.51973 -9.65417 -8.97767 -8.51331 -8.34425 -8.19227 -7.85924 -7.21318 -6.59343 -4.18364 1.41973 1.95145 2.09523 2.14274 3.06520 3.06991 3.09683 3.84587 4.06722 4.10913 4.39113 4.81554 4.94981 5.11252 5.21918 5.24976 5.31998 5.38904 5.43115 5.55713 5.55988 5.62608 5.69285 5.77286 5.86663 5.92633 5.99585 6.00589 6.01951 6.12374 6.16086 6.31560 6.37811 6.52906 6.66905 6.79716 6.86632 6.93915 6.99382 6.99579 7.02937 7.14659 7.28160 7.32163 7.59321 7.75204 7.83578 8.84636 9.48898 10.56058 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010108 B = 0.005132 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.465540 B = 5455.092385 C = 7798.687794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.070 4.070 3 C -0.114 4.114 4 C -0.009 4.009 5 C -0.140 4.140 6 C -0.034 4.034 7 C -0.249 4.249 8 C 0.144 3.856 9 F -0.151 7.151 10 C -0.271 4.271 11 C 0.185 3.815 12 O -0.152 6.152 13 C -0.398 4.398 14 H 0.093 0.907 15 C 0.046 3.954 16 N -0.849 5.849 17 Si 0.940 3.060 18 H -0.268 1.268 19 H -0.277 1.277 20 H -0.268 1.268 21 C -0.073 4.073 22 C -0.139 4.139 23 C 0.067 3.933 24 N -0.505 5.505 25 C 0.028 3.972 26 C 0.028 3.972 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.140 0.860 34 H 0.272 0.728 35 H 0.124 0.876 36 H 0.113 0.887 37 H 0.070 0.930 38 H 0.032 0.968 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.908 -2.154 -7.207 10.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.071 4.071 3 C -0.132 4.132 4 C -0.009 4.009 5 C -0.142 4.142 6 C -0.052 4.052 7 C -0.268 4.268 8 C 0.125 3.875 9 F -0.130 7.130 10 C -0.291 4.291 11 C 0.129 3.871 12 O -0.053 6.053 13 C -0.474 4.474 14 H 0.111 0.889 15 C -0.160 4.160 16 N -0.482 5.482 17 Si 0.764 3.236 18 H -0.193 1.193 19 H -0.202 1.202 20 H -0.193 1.193 21 C -0.092 4.092 22 C -0.158 4.158 23 C -0.026 4.026 24 N -0.226 5.226 25 C -0.119 4.119 26 C -0.119 4.119 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.138 0.862 31 H 0.143 0.857 32 H 0.138 0.862 33 H 0.158 0.842 34 H 0.082 0.918 35 H 0.142 0.858 36 H 0.131 0.869 37 H 0.089 0.911 38 H 0.051 0.949 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -8.473 -2.514 -6.973 11.258 hybrid contribution 2.003 0.259 0.719 2.144 sum -6.470 -2.254 -6.254 9.276 Atomic orbital electron populations 1.20566 0.91200 1.01940 1.01796 1.19522 0.95824 0.91267 1.00463 1.20971 0.93041 0.97060 1.02137 1.18540 0.92259 0.91962 0.98131 1.17905 1.00935 0.95464 0.99892 1.20544 0.97365 0.91135 0.96163 1.20460 1.01973 1.00154 1.04250 1.17528 0.92204 0.81118 0.96695 1.91418 1.79268 1.46274 1.96052 1.20986 1.07992 0.95016 1.05153 1.18983 0.91672 0.88090 0.88391 1.84012 1.43441 1.37486 1.40345 1.21341 1.05616 1.02105 1.18325 0.88947 1.25285 0.98866 0.94474 0.97412 1.70043 1.38648 1.04253 1.35258 0.85787 0.80020 0.78357 0.79404 1.19342 1.20155 1.19347 1.21073 1.00220 0.90971 0.96895 1.21375 0.94119 0.98253 1.02104 1.18502 0.90085 0.90223 1.03790 1.59572 1.56679 1.03406 1.02895 1.22428 0.99380 0.97276 0.92826 1.22415 0.99494 0.97891 0.92064 0.91939 0.92694 0.90939 0.86177 0.85743 0.86154 0.84210 0.91778 0.85778 0.86943 0.91112 0.94925 0.91518 0.91470 0.91409 0.95248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 9.76 36.01 0.35 -0.92 16 2 C -0.07 -1.13 5.89 -104.47 -0.62 -1.74 16 3 C -0.11 -1.95 9.15 -39.27 -0.36 -2.31 16 4 C -0.01 -0.17 5.28 -104.88 -0.55 -0.73 16 5 C -0.14 -2.86 5.48 -104.72 -0.57 -3.43 16 6 C -0.03 -0.58 9.51 -39.28 -0.37 -0.96 16 7 C -0.25 -4.31 10.01 -39.51 -0.40 -4.71 16 8 C 0.14 2.80 7.29 -39.38 -0.29 2.52 16 9 F -0.15 -2.84 17.26 2.25 0.04 -2.80 16 10 C -0.27 -5.90 9.14 -39.37 -0.36 -6.26 16 11 C 0.18 4.29 6.55 -38.75 -0.25 4.04 16 12 O -0.15 -4.04 8.10 0.35 0.00 -4.04 16 13 C -0.40 -10.58 9.49 30.88 0.29 -10.29 16 14 H 0.09 2.30 5.21 -52.49 -0.27 2.03 16 15 C 0.05 1.20 5.49 -17.52 -0.10 1.10 16 16 N -0.85 -23.49 13.67 55.48 0.76 -22.73 16 17 Si 0.94 19.80 29.55 -169.99 -5.02 14.78 16 18 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 21 C -0.07 -1.48 8.77 -39.27 -0.34 -1.82 16 22 C -0.14 -2.51 8.55 -39.43 -0.34 -2.85 16 23 C 0.07 1.11 4.71 -83.74 -0.39 0.72 16 24 N -0.50 -7.06 3.92 -186.82 -0.73 -7.79 16 25 C 0.03 0.37 9.34 60.06 0.56 0.93 16 26 C 0.03 0.33 9.38 60.06 0.56 0.89 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.62 8.08 -51.93 -0.42 0.20 16 29 H 0.07 0.90 7.45 -51.93 -0.39 0.52 16 30 H 0.12 1.83 8.04 -52.49 -0.42 1.41 16 31 H 0.12 1.77 8.04 -52.49 -0.42 1.35 16 32 H 0.12 1.76 8.06 -52.48 -0.42 1.34 16 33 H 0.14 3.06 5.64 -52.48 -0.30 2.76 16 34 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.12 2.75 7.68 -52.49 -0.40 2.34 16 36 H 0.11 1.93 7.00 -52.49 -0.37 1.56 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.03 0.45 7.09 -51.93 -0.37 0.08 16 39 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 40 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.03 0.35 7.35 -51.93 -0.38 -0.03 16 LS Contribution 356.24 15.07 5.37 5.37 Total: -1.00 -28.40 356.24 -8.17 -36.57 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -5.41 Total: 6.46 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: -3.18 Total: -25.82 kcal Atomic # 7 Polarization: -30.55 SS G_CDS: 0.03 Total: -30.52 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: 0.00 Total: -4.04 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.04 Total: -2.80 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.40 -8.17 -36.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242242378.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.762 kcal (2) G-P(sol) polarization free energy of solvation -28.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds