Wall clock time and date at job start Tue Mar 31 2020 11:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37871 * 119.97278 * 2 1 4 4 C 1.39430 * 119.94881 * 180.02562 * 3 2 1 5 5 C 1.48245 * 120.05473 * 179.97438 * 4 3 2 6 6 C 1.39316 * 120.13517 * 309.72353 * 5 4 3 7 7 C 1.37973 * 119.96549 * 179.67467 * 6 5 4 8 8 C 1.38683 * 120.24581 * 0.62252 * 7 6 5 9 9 F 1.35103 * 119.85841 * 179.69850 * 8 7 6 10 10 C 1.38331 * 120.27444 * 359.67655 * 8 7 6 11 11 C 1.38704 * 120.02972 * 359.97438 * 10 8 7 12 12 O 1.35669 * 120.11902 * 180.02562 * 11 10 8 13 13 C 1.34812 * 117.00610 * 354.39814 * 12 11 10 14 14 H 1.07998 * 119.99483 * 5.06492 * 13 12 11 15 15 C 1.38625 * 120.00292 * 185.06474 * 13 12 11 16 16 N 1.31570 * 120.00037 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00077 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47232 * 60.00122 * 17 15 13 19 19 H 1.48497 * 109.47202 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47182 * 299.99740 * 17 15 13 21 21 C 1.39476 * 119.89778 * 359.97438 * 4 3 2 22 22 C 1.37840 * 119.94323 * 359.75236 * 21 4 3 23 23 C 1.38999 * 119.97489 * 180.02562 * 2 1 3 24 24 N 1.39604 * 119.94901 * 359.97438 * 23 2 1 25 25 C 1.46896 * 111.00245 * 240.00600 * 24 23 2 26 26 C 1.46901 * 111.00086 * 116.04679 * 24 23 2 27 27 H 1.09002 * 109.46912 * 269.97705 * 1 2 3 28 28 H 1.08999 * 109.46835 * 29.98254 * 1 2 3 29 29 H 1.08998 * 109.46713 * 149.97773 * 1 2 3 30 30 H 1.08000 * 120.02565 * 0.02562 * 3 2 1 31 31 H 1.08002 * 120.01580 * 359.97438 * 6 5 4 32 32 H 1.08005 * 119.88101 * 180.29774 * 7 6 5 33 33 H 1.08005 * 119.98230 * 180.02562 * 10 8 7 34 34 H 0.97006 * 120.00070 * 180.02562 * 16 15 13 35 35 H 1.07995 * 120.03342 * 179.97438 * 21 4 3 36 36 H 1.08001 * 119.97416 * 180.24727 * 22 21 4 37 37 H 1.08996 * 109.47524 * 60.00024 * 25 24 23 38 38 H 1.09004 * 109.46934 * 299.99530 * 25 24 23 39 39 H 1.09001 * 109.47065 * 180.02562 * 25 24 23 40 40 H 1.08992 * 109.47690 * 180.02562 * 26 24 23 41 41 H 1.09001 * 109.46943 * 300.00582 * 26 24 23 42 42 H 1.09001 * 109.46639 * 59.99754 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1959 1.1943 0.0000 4 6 3.5902 1.1937 -0.0005 5 6 4.3331 2.4766 -0.0011 6 6 4.0170 3.4675 -0.9279 7 6 4.7062 4.6627 -0.9210 8 6 5.7227 4.8776 -0.0024 9 9 6.3966 6.0486 -0.0065 10 6 6.0492 3.8982 0.9184 11 6 5.3589 2.6952 0.9263 12 8 5.6772 1.7336 1.8289 13 6 6.7489 1.9618 2.6142 14 1 7.2616 2.9110 2.5655 15 6 7.1929 0.9780 3.4841 16 7 6.5680 -0.1783 3.5437 17 14 8.6784 1.2939 4.5717 18 1 8.4075 2.4573 5.4540 19 1 8.9466 0.0939 5.4042 20 1 9.8617 1.5820 3.7220 21 6 4.2849 -0.0157 -0.0005 22 6 3.5919 -1.2072 0.0052 23 6 2.2015 -1.2041 -0.0005 24 7 1.5019 -2.4121 -0.0005 25 6 1.8318 -3.2116 1.1869 26 6 1.7587 -3.1692 -1.2329 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8901 -0.5136 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6558 2.1296 0.0004 31 1 3.2296 3.3021 -1.6483 32 1 4.4568 5.4319 -1.6370 33 1 6.8414 4.0708 1.6319 34 1 6.8784 -0.8666 4.1527 35 1 5.3648 -0.0187 -0.0014 36 1 4.1293 -2.1440 0.0092 37 1 1.5667 -2.6543 2.0853 38 1 2.9004 -3.4266 1.1947 39 1 1.2735 -4.1474 1.1614 40 1 1.2013 -4.1055 -1.2071 41 1 1.4405 -2.5810 -2.0937 42 1 2.8247 -3.3826 -1.3127 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242242378.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:47 Heat of formation + Delta-G solvation = -30.632415 kcal Electronic energy + Delta-G solvation = -25867.714181 eV Core-core repulsion = 22113.317313 eV Total energy + Delta-G solvation = -3754.396868 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.88170 -41.29095 -40.46280 -38.26336 -37.22325 -34.37129 -33.77656 -32.43995 -30.96052 -29.34072 -28.48320 -27.70209 -27.37270 -25.48209 -23.65127 -23.26529 -22.44260 -21.18303 -20.10697 -19.16988 -17.86501 -17.33606 -17.03306 -16.92167 -16.67684 -16.46656 -16.00207 -15.96609 -15.44660 -15.42256 -15.03511 -14.93186 -14.68122 -14.29787 -14.11332 -13.94833 -13.83932 -13.46598 -13.32308 -13.08410 -12.88774 -12.85569 -12.68362 -12.59385 -12.38599 -12.29743 -12.16325 -12.12663 -11.91603 -11.46707 -10.85056 -10.00942 -9.61104 -9.50544 -9.40134 -8.79292 -8.51736 -6.19778 -0.08261 0.50098 0.54088 0.65865 1.31667 1.40814 1.46150 2.11606 2.56968 2.83858 2.96101 3.06441 3.22294 3.46199 3.79467 3.94825 3.99754 4.06694 4.20017 4.25698 4.40410 4.42307 4.47630 4.54134 4.62388 4.65905 4.81257 4.84645 4.90771 4.96965 4.98177 4.99897 5.01011 5.06431 5.12479 5.24981 5.30837 5.44584 5.49349 5.54074 5.68349 5.79493 5.91542 5.93483 5.96681 6.03540 6.46373 6.91135 7.65799 8.67748 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010108 B = 0.005132 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.465540 B = 5455.092385 C = 7798.687794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.070 4.070 3 C -0.109 4.109 4 C -0.031 4.031 5 C -0.143 4.143 6 C -0.023 4.023 7 C -0.218 4.218 8 C 0.135 3.865 9 F -0.146 7.146 10 C -0.286 4.286 11 C 0.154 3.846 12 O -0.195 6.195 13 C -0.422 4.422 14 H 0.097 0.903 15 C -0.009 4.009 16 N -0.901 5.901 17 Si 1.010 2.990 18 H -0.260 1.260 19 H -0.270 1.270 20 H -0.260 1.260 21 C -0.097 4.097 22 C -0.148 4.148 23 C 0.073 3.927 24 N -0.502 5.502 25 C 0.028 3.972 26 C 0.027 3.973 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.147 0.853 31 H 0.169 0.831 32 H 0.164 0.836 33 H 0.127 0.873 34 H 0.273 0.727 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.057 0.943 38 H 0.017 0.983 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.377 -1.046 -8.954 13.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.071 4.071 3 C -0.127 4.127 4 C -0.031 4.031 5 C -0.144 4.144 6 C -0.041 4.041 7 C -0.237 4.237 8 C 0.116 3.884 9 F -0.125 7.125 10 C -0.306 4.306 11 C 0.101 3.899 12 O -0.099 6.099 13 C -0.497 4.497 14 H 0.114 0.886 15 C -0.209 4.209 16 N -0.537 5.537 17 Si 0.830 3.170 18 H -0.184 1.184 19 H -0.194 1.194 20 H -0.185 1.185 21 C -0.116 4.116 22 C -0.168 4.168 23 C -0.021 4.021 24 N -0.223 5.223 25 C -0.119 4.119 26 C -0.120 4.120 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.164 0.836 31 H 0.186 0.814 32 H 0.181 0.819 33 H 0.144 0.856 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.128 0.872 37 H 0.076 0.924 38 H 0.036 0.964 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.092 0.908 42 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -10.956 -1.366 -8.762 14.095 hybrid contribution 2.599 0.024 1.010 2.789 sum -8.357 -1.342 -7.751 11.477 Atomic orbital electron populations 1.20607 0.88303 1.03531 1.02479 1.19969 0.97828 0.90570 0.98758 1.21226 0.91791 0.98683 1.01043 1.18637 0.93541 0.91177 0.99718 1.18318 0.99938 0.96658 0.99502 1.21030 0.97746 0.89898 0.95392 1.20980 0.99264 1.00693 1.02807 1.17637 0.93053 0.80846 0.96850 1.91432 1.79314 1.45701 1.96015 1.21020 1.08013 0.95603 1.06000 1.19530 0.93039 0.88199 0.89130 1.84008 1.44422 1.39188 1.42283 1.21728 1.06372 1.02626 1.19012 0.88601 1.26410 1.01779 0.94039 0.98662 1.70182 1.41015 1.05478 1.37022 0.84766 0.76224 0.78545 0.77492 1.18401 1.19408 1.18460 1.20897 0.98635 0.92709 0.99382 1.21434 0.95357 0.97409 1.02645 1.18724 0.89280 0.91933 1.02157 1.59721 1.55637 1.02935 1.04009 1.22469 0.98994 0.98332 0.92140 1.22516 0.99529 0.98871 0.91046 0.91519 0.90355 0.90162 0.83563 0.81405 0.81874 0.85558 0.91812 0.89511 0.87150 0.92371 0.96394 0.88333 0.88753 0.90831 0.96056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.07 9.76 71.24 0.70 -1.37 16 2 C -0.07 -2.13 5.89 -19.77 -0.12 -2.25 16 3 C -0.11 -3.56 9.15 22.47 0.21 -3.35 16 4 C -0.03 -1.22 5.28 -20.03 -0.11 -1.33 16 5 C -0.14 -5.81 5.48 -19.93 -0.11 -5.92 16 6 C -0.02 -0.72 9.51 22.47 0.21 -0.50 16 7 C -0.22 -6.73 10.01 22.31 0.22 -6.51 16 8 C 0.14 5.09 7.29 22.40 0.16 5.25 16 9 F -0.15 -5.22 17.26 44.97 0.78 -4.44 16 10 C -0.29 -12.82 9.14 22.40 0.20 -12.61 16 11 C 0.15 7.48 6.55 22.81 0.15 7.63 16 12 O -0.19 -11.18 8.10 -21.66 -0.18 -11.36 16 13 C -0.42 -24.01 9.49 67.91 0.64 -23.36 16 14 H 0.10 5.13 5.21 -2.91 -0.02 5.11 16 15 C -0.01 -0.49 5.49 84.82 0.47 -0.03 16 16 N -0.90 -53.34 13.67 21.61 0.30 -53.05 16 17 Si 1.01 42.44 29.55 68.60 2.03 44.47 16 18 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 19 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 20 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 21 C -0.10 -4.23 8.77 22.47 0.20 -4.03 16 22 C -0.15 -5.65 8.55 22.37 0.19 -5.45 16 23 C 0.07 2.36 4.71 38.28 0.18 2.54 16 24 N -0.50 -13.24 3.92 -744.96 -2.92 -16.16 16 25 C 0.03 0.70 9.34 127.69 1.19 1.90 16 26 C 0.03 0.57 9.38 127.69 1.20 1.77 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.08 1.41 8.08 -2.39 -0.02 1.39 16 29 H 0.08 1.69 7.45 -2.39 -0.02 1.67 16 30 H 0.15 3.92 8.04 -2.91 -0.02 3.90 16 31 H 0.17 3.86 8.04 -2.91 -0.02 3.84 16 32 H 0.16 3.75 8.06 -2.91 -0.02 3.73 16 33 H 0.13 5.87 5.64 -2.91 -0.02 5.85 16 34 H 0.27 14.94 8.31 -92.70 -0.77 14.16 16 35 H 0.09 4.32 7.68 -2.91 -0.02 4.30 16 36 H 0.11 4.09 7.00 -2.91 -0.02 4.07 16 37 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.02 0.50 7.09 -2.38 -0.02 0.48 16 39 H 0.10 1.87 8.12 -2.39 -0.02 1.86 16 40 H 0.09 1.51 8.12 -2.39 -0.02 1.49 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.02 0.49 7.35 -2.39 -0.02 0.47 16 Total: -1.00 -67.50 356.24 6.64 -60.87 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 1.04 Total: 27.31 kcal Atomic # 6 Polarization: -53.23 SS G_CDS: 5.59 Total: -47.64 kcal Atomic # 7 Polarization: -66.59 SS G_CDS: -2.62 Total: -69.21 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -0.18 Total: -11.36 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.78 Total: -4.44 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -67.50 6.64 -60.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242242378.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.234 kcal (2) G-P(sol) polarization free energy of solvation -67.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds