Wall clock time and date at job start Tue Mar 31 2020 11:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36278 * 120.06075 * 2 1 4 4 C 1.39909 * 120.12057 * 179.97438 * 3 2 1 5 5 C 1.48014 * 119.87673 * 179.97438 * 4 3 2 6 6 C 1.39673 * 120.49978 * 0.02562 * 5 4 3 7 7 N 1.31702 * 120.81665 * 180.02562 * 6 5 4 8 8 C 1.31812 * 122.01324 * 359.67299 * 7 6 5 9 9 C 1.39426 * 120.91344 * 0.59623 * 8 7 6 10 10 C 1.48414 * 120.46348 * 179.72241 * 9 8 7 11 11 C 1.39328 * 120.11583 * 359.71947 * 10 9 8 12 12 C 1.38023 * 119.87125 * 179.97438 * 11 10 9 13 13 C 1.38322 * 120.12514 * 359.97438 * 12 11 10 14 14 C 1.38323 * 120.23946 * 0.02562 * 13 12 11 15 15 C 1.38020 * 120.12241 * 359.97438 * 14 13 12 16 16 C 1.39491 * 119.07168 * 359.44571 * 9 8 7 17 17 C 1.39941 * 120.24129 * 0.27125 * 4 3 2 18 18 C 1.36240 * 120.11947 * 359.44667 * 17 4 3 19 19 C 1.40909 * 120.06451 * 179.97438 * 2 1 3 20 20 C 1.41031 * 120.11491 * 0.02562 * 19 2 1 21 21 H 1.08001 * 120.00652 * 25.65050 * 20 19 2 22 22 C 1.40015 * 119.99910 * 205.65581 * 20 19 2 23 23 N 1.30802 * 119.99868 * 15.45548 * 22 20 19 24 24 Si 1.86794 * 120.00109 * 195.45589 * 22 20 19 25 25 H 1.48498 * 109.47266 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47042 * 120.00202 * 24 22 20 27 27 H 1.48502 * 109.47369 * 239.99658 * 24 22 20 28 28 H 1.09000 * 109.47358 * 90.00513 * 1 2 3 29 29 H 1.08995 * 109.47052 * 210.00046 * 1 2 3 30 30 H 1.09002 * 109.47064 * 330.00086 * 1 2 3 31 31 H 1.07997 * 119.93516 * 359.97438 * 3 2 1 32 32 H 1.07992 * 119.59525 * 359.97438 * 6 5 4 33 33 H 1.08004 * 119.53915 * 180.29370 * 8 7 6 34 34 H 1.07999 * 120.06677 * 359.97438 * 11 10 9 35 35 H 1.08005 * 119.93479 * 179.72605 * 12 11 10 36 36 H 1.07996 * 119.88120 * 179.97438 * 13 12 11 37 37 H 1.07994 * 119.93518 * 179.97438 * 14 13 12 38 38 H 1.07994 * 120.06483 * 180.02562 * 15 14 13 39 39 H 1.07998 * 120.90762 * 180.23287 * 16 9 8 40 40 H 1.07996 * 119.93977 * 179.72992 * 17 4 3 41 41 H 1.08004 * 120.05946 * 180.25282 * 18 17 4 42 42 H 0.96994 * 119.99765 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1896 1.1795 0.0000 4 6 3.5887 1.1809 0.0005 5 6 4.3247 2.4651 0.0000 6 6 3.6330 3.6786 -0.0006 7 7 4.2816 4.8249 -0.0016 8 6 5.5984 4.8827 0.0042 9 6 6.3665 3.7191 -0.0007 10 6 7.8486 3.7958 -0.0002 11 6 8.4844 5.0356 -0.0008 12 6 9.8631 5.1011 0.0002 13 6 10.6133 3.9390 0.0022 14 6 9.9872 2.7056 0.0028 15 6 8.6092 2.6284 0.0019 16 6 5.7224 2.4818 -0.0001 17 6 4.2948 -0.0273 -0.0046 18 6 3.6223 -1.2121 0.0011 19 6 2.2129 -1.2195 0.0005 20 6 1.5116 -2.4431 0.0005 21 1 0.5117 -2.4925 -0.4047 22 6 2.1115 -3.5939 0.5260 23 7 3.1753 -3.4906 1.2801 24 14 1.3928 -5.2766 0.1502 25 1 0.1983 -5.1219 -0.7182 26 1 2.4092 -6.1042 -0.5478 27 1 0.9995 -5.9414 1.4185 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6496 2.1147 -0.0004 32 1 2.5531 3.6769 -0.0010 33 1 6.0891 5.8448 0.0079 34 1 7.8997 5.9436 -0.0020 35 1 10.3570 6.0616 -0.0048 36 1 11.6919 3.9949 0.0025 37 1 10.5777 1.8014 0.0040 38 1 8.1213 1.6649 0.0028 39 1 6.2882 1.5618 0.0000 40 1 5.3747 -0.0205 -0.0086 41 1 4.1682 -2.1440 0.0013 42 1 3.5907 -4.2878 1.6444 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242915214.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:27 Heat of formation + Delta-G solvation = 62.388125 kcal Electronic energy + Delta-G solvation = -23855.729529 eV Core-core repulsion = 20536.135559 eV Total energy + Delta-G solvation = -3319.593970 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.09481 -38.74712 -37.78644 -34.25280 -33.23193 -32.65966 -31.18080 -30.81537 -29.47044 -28.57884 -26.43778 -25.19854 -23.82898 -23.43845 -21.80146 -21.61523 -20.22839 -19.30110 -17.65120 -17.43480 -16.27877 -15.92782 -15.76626 -15.33690 -14.50024 -14.43054 -14.04623 -13.74490 -13.66043 -13.56649 -13.38552 -12.88863 -12.81125 -12.73424 -12.62225 -12.04858 -11.78828 -11.60778 -11.41424 -11.28767 -11.22779 -11.11829 -10.97668 -10.79188 -10.62102 -10.00167 -9.85529 -9.57608 -9.52197 -9.02538 -9.01117 -8.92895 -8.06172 -7.57864 -7.18916 -6.98708 -4.53814 0.72380 1.33916 1.45444 2.02658 2.67976 2.92785 2.94868 2.98549 3.10460 3.72792 3.76573 4.26090 4.58293 4.60758 4.74950 4.85535 4.90169 5.09461 5.27123 5.30891 5.36707 5.43622 5.47891 5.61538 5.75498 5.89478 5.95520 6.02194 6.13765 6.24340 6.28438 6.33180 6.40060 6.43334 6.50858 6.56547 6.62487 6.72960 6.82038 6.87696 6.93235 7.06819 7.12771 7.25408 7.44825 7.70395 7.84830 7.92192 8.05857 8.37967 8.41119 8.62043 8.73996 9.88862 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.017332 B = 0.003011 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.103685 B = 9297.455217 C =10831.071687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.200 4.200 3 C -0.057 4.057 4 C -0.204 4.204 5 C -0.017 4.017 6 C 0.069 3.931 7 N -0.475 5.475 8 C 0.059 3.941 9 C -0.092 4.092 10 C -0.030 4.030 11 C -0.114 4.114 12 C -0.119 4.119 13 C -0.126 4.126 14 C -0.117 4.117 15 C -0.111 4.111 16 C -0.098 4.098 17 C -0.077 4.077 18 C -0.168 4.168 19 C 0.123 3.877 20 C -0.436 4.436 21 H 0.086 0.914 22 C 0.071 3.929 23 N -0.776 5.776 24 Si 0.912 3.088 25 H -0.258 1.258 26 H -0.269 1.269 27 H -0.272 1.272 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.040 0.960 31 H 0.094 0.906 32 H 0.152 0.848 33 H 0.146 0.854 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.132 0.868 40 H 0.090 0.910 41 H 0.121 0.879 42 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.836 8.022 -1.605 12.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.201 4.201 3 C -0.075 4.075 4 C -0.206 4.206 5 C -0.019 4.019 6 C -0.089 4.089 7 N -0.182 5.182 8 C -0.098 4.098 9 C -0.094 4.094 10 C -0.030 4.030 11 C -0.132 4.132 12 C -0.137 4.137 13 C -0.144 4.144 14 C -0.135 4.135 15 C -0.129 4.129 16 C -0.123 4.123 17 C -0.095 4.095 18 C -0.187 4.187 19 C 0.120 3.880 20 C -0.464 4.464 21 H 0.104 0.896 22 C -0.149 4.149 23 N -0.399 5.399 24 Si 0.736 3.264 25 H -0.181 1.181 26 H -0.194 1.194 27 H -0.197 1.197 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.112 0.888 32 H 0.170 0.830 33 H 0.163 0.837 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.150 0.850 40 H 0.108 0.892 41 H 0.139 0.861 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.506 8.646 -1.456 12.216 hybrid contribution 0.389 -1.636 -0.006 1.682 sum 8.895 7.010 -1.463 11.419 Atomic orbital electron populations 1.20425 0.93234 1.00803 0.99877 1.19451 0.94617 0.92945 1.13118 1.20243 0.92624 0.96254 0.98405 1.17876 0.92503 0.89978 1.20212 1.19911 0.92799 0.94823 0.94360 1.22861 1.00147 0.86874 0.99043 1.67438 1.09677 1.29751 1.11284 1.22511 0.89420 0.97003 1.00834 1.19605 0.92274 0.94685 1.02805 1.18766 0.91550 0.93458 0.99266 1.21228 0.94600 0.97055 1.00287 1.21060 0.93764 0.98385 1.00518 1.21178 0.99755 0.92644 1.00861 1.21099 0.94445 0.97843 1.00122 1.21325 0.93863 0.98210 0.99509 1.21666 0.94021 0.96954 0.99622 1.20472 0.97236 0.92472 0.99333 1.21014 0.94499 0.96666 1.06542 1.17629 0.91950 0.91748 0.86683 1.19808 1.01762 0.92340 1.32501 0.89559 1.26078 0.94235 1.01939 0.92648 1.69810 1.16942 1.32178 1.20979 0.86181 0.80260 0.80553 0.79436 1.18103 1.19445 1.19698 0.93822 0.91986 0.94098 0.88765 0.83038 0.83719 0.85675 0.86022 0.86231 0.85922 0.85563 0.85018 0.89213 0.86112 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.67 9.39 36.00 0.34 -1.34 16 2 C -0.20 -4.52 5.90 -104.32 -0.62 -5.14 16 3 C -0.06 -1.22 9.01 -39.66 -0.36 -1.57 16 4 C -0.20 -4.36 5.90 -104.63 -0.62 -4.98 16 5 C -0.02 -0.33 5.89 -104.78 -0.62 -0.94 16 6 C 0.07 1.25 10.60 -17.07 -0.18 1.07 16 7 N -0.47 -8.39 10.33 -12.62 -0.13 -8.52 16 8 C 0.06 0.94 10.59 -17.12 -0.18 0.76 16 9 C -0.09 -1.46 5.89 -104.80 -0.62 -2.07 16 10 C -0.03 -0.41 5.88 -104.89 -0.62 -1.03 16 11 C -0.11 -1.33 9.44 -39.25 -0.37 -1.70 16 12 C -0.12 -1.21 10.03 -39.63 -0.40 -1.60 16 13 C -0.13 -1.26 10.04 -39.52 -0.40 -1.66 16 14 C -0.12 -1.28 10.03 -39.63 -0.40 -1.68 16 15 C -0.11 -1.44 9.44 -39.25 -0.37 -1.81 16 16 C -0.10 -1.71 8.89 -38.54 -0.34 -2.05 16 17 C -0.08 -1.70 9.37 -39.66 -0.37 -2.07 16 18 C -0.17 -4.08 8.62 -39.28 -0.34 -4.41 16 19 C 0.12 3.03 5.57 -106.80 -0.59 2.43 16 20 C -0.44 -10.52 8.12 -37.86 -0.31 -10.83 16 21 H 0.09 1.99 6.85 -52.49 -0.36 1.63 16 22 C 0.07 1.64 5.18 -17.32 -0.09 1.55 16 23 N -0.78 -18.46 10.88 55.55 0.60 -17.86 16 24 Si 0.91 17.13 29.59 -169.99 -5.03 12.10 16 25 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 26 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 27 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 1.22 6.76 -51.93 -0.35 0.86 16 30 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 31 H 0.09 1.77 6.20 -52.49 -0.33 1.44 16 32 H 0.15 2.55 6.19 -52.49 -0.32 2.22 16 33 H 0.15 1.85 6.21 -52.48 -0.33 1.52 16 34 H 0.13 1.25 6.23 -52.49 -0.33 0.92 16 35 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 37 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.13 1.59 6.27 -52.49 -0.33 1.26 16 39 H 0.13 2.16 4.56 -52.49 -0.24 1.92 16 40 H 0.09 1.78 6.24 -52.49 -0.33 1.45 16 41 H 0.12 3.01 6.14 -52.48 -0.32 2.68 16 42 H 0.28 6.12 8.29 -40.82 -0.34 5.78 16 LS Contribution 346.21 15.07 5.22 5.22 Total: -1.00 -26.56 346.21 -11.26 -37.82 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -4.48 Total: 10.32 kcal Atomic # 6 Polarization: -31.64 SS G_CDS: -7.44 Total: -39.08 kcal Atomic # 7 Polarization: -26.85 SS G_CDS: 0.47 Total: -26.38 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.10 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -26.56 -11.26 -37.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242915214.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.207 kcal (2) G-P(sol) polarization free energy of solvation -26.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds