Wall clock time and date at job start Tue Mar 31 2020 11:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36278 * 120.06075 * 2 1 4 4 C 1.39909 * 120.12057 * 179.97438 * 3 2 1 5 5 C 1.48014 * 119.87673 * 179.97438 * 4 3 2 6 6 C 1.39673 * 120.49978 * 0.02562 * 5 4 3 7 7 N 1.31702 * 120.81665 * 180.02562 * 6 5 4 8 8 C 1.31812 * 122.01324 * 359.67299 * 7 6 5 9 9 C 1.39426 * 120.91344 * 0.59623 * 8 7 6 10 10 C 1.48414 * 120.46348 * 179.72241 * 9 8 7 11 11 C 1.39328 * 120.11583 * 359.71947 * 10 9 8 12 12 C 1.38023 * 119.87125 * 179.97438 * 11 10 9 13 13 C 1.38322 * 120.12514 * 359.97438 * 12 11 10 14 14 C 1.38323 * 120.23946 * 0.02562 * 13 12 11 15 15 C 1.38020 * 120.12241 * 359.97438 * 14 13 12 16 16 C 1.39491 * 119.07168 * 359.44571 * 9 8 7 17 17 C 1.39941 * 120.24129 * 0.27125 * 4 3 2 18 18 C 1.36240 * 120.11947 * 359.44667 * 17 4 3 19 19 C 1.40909 * 120.06451 * 179.97438 * 2 1 3 20 20 C 1.41031 * 120.11491 * 0.02562 * 19 2 1 21 21 H 1.08001 * 120.00652 * 25.65050 * 20 19 2 22 22 C 1.40015 * 119.99910 * 205.65581 * 20 19 2 23 23 N 1.30802 * 119.99868 * 15.45548 * 22 20 19 24 24 Si 1.86794 * 120.00109 * 195.45589 * 22 20 19 25 25 H 1.48498 * 109.47266 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47042 * 120.00202 * 24 22 20 27 27 H 1.48502 * 109.47369 * 239.99658 * 24 22 20 28 28 H 1.09000 * 109.47358 * 90.00513 * 1 2 3 29 29 H 1.08995 * 109.47052 * 210.00046 * 1 2 3 30 30 H 1.09002 * 109.47064 * 330.00086 * 1 2 3 31 31 H 1.07997 * 119.93516 * 359.97438 * 3 2 1 32 32 H 1.07992 * 119.59525 * 359.97438 * 6 5 4 33 33 H 1.08004 * 119.53915 * 180.29370 * 8 7 6 34 34 H 1.07999 * 120.06677 * 359.97438 * 11 10 9 35 35 H 1.08005 * 119.93479 * 179.72605 * 12 11 10 36 36 H 1.07996 * 119.88120 * 179.97438 * 13 12 11 37 37 H 1.07994 * 119.93518 * 179.97438 * 14 13 12 38 38 H 1.07994 * 120.06483 * 180.02562 * 15 14 13 39 39 H 1.07998 * 120.90762 * 180.23287 * 16 9 8 40 40 H 1.07996 * 119.93977 * 179.72992 * 17 4 3 41 41 H 1.08004 * 120.05946 * 180.25282 * 18 17 4 42 42 H 0.96994 * 119.99765 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1896 1.1795 0.0000 4 6 3.5887 1.1809 0.0005 5 6 4.3247 2.4651 0.0000 6 6 3.6330 3.6786 -0.0006 7 7 4.2816 4.8249 -0.0016 8 6 5.5984 4.8827 0.0042 9 6 6.3665 3.7191 -0.0007 10 6 7.8486 3.7958 -0.0002 11 6 8.4844 5.0356 -0.0008 12 6 9.8631 5.1011 0.0002 13 6 10.6133 3.9390 0.0022 14 6 9.9872 2.7056 0.0028 15 6 8.6092 2.6284 0.0019 16 6 5.7224 2.4818 -0.0001 17 6 4.2948 -0.0273 -0.0046 18 6 3.6223 -1.2121 0.0011 19 6 2.2129 -1.2195 0.0005 20 6 1.5116 -2.4431 0.0005 21 1 0.5117 -2.4925 -0.4047 22 6 2.1115 -3.5939 0.5260 23 7 3.1753 -3.4906 1.2801 24 14 1.3928 -5.2766 0.1502 25 1 0.1983 -5.1219 -0.7182 26 1 2.4092 -6.1042 -0.5478 27 1 0.9995 -5.9414 1.4185 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6496 2.1147 -0.0004 32 1 2.5531 3.6769 -0.0010 33 1 6.0891 5.8448 0.0079 34 1 7.8997 5.9436 -0.0020 35 1 10.3570 6.0616 -0.0048 36 1 11.6919 3.9949 0.0025 37 1 10.5777 1.8014 0.0040 38 1 8.1213 1.6649 0.0028 39 1 6.2882 1.5618 0.0000 40 1 5.3747 -0.0205 -0.0086 41 1 4.1682 -2.1440 0.0013 42 1 3.5907 -4.2878 1.6444 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242915214.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:26 Heat of formation + Delta-G solvation = 52.998105 kcal Electronic energy + Delta-G solvation = -23856.136711 eV Core-core repulsion = 20536.135559 eV Total energy + Delta-G solvation = -3320.001152 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.37014 -39.90849 -39.29682 -35.91274 -34.45125 -34.15297 -32.63297 -31.90802 -30.86004 -29.89090 -28.05129 -26.78979 -25.06194 -24.74107 -23.08356 -22.81248 -21.62596 -20.87143 -19.26262 -18.68370 -17.47736 -17.34962 -17.02766 -16.69837 -15.87675 -15.54832 -15.50734 -15.10963 -15.06761 -14.61104 -14.56257 -14.45378 -14.30759 -14.01352 -13.70345 -13.49773 -13.36320 -13.11137 -12.89003 -12.82528 -12.66156 -12.50719 -12.25998 -12.08509 -11.85080 -11.50039 -11.24538 -11.21401 -11.12506 -10.52997 -10.35946 -9.87183 -9.32080 -9.20416 -8.84074 -8.66341 -6.32437 -0.41727 0.02034 0.48602 0.87283 1.11277 1.18998 1.38405 1.52712 1.56464 2.16753 2.59436 2.85491 3.17374 3.40816 3.68222 3.72390 3.79858 3.92159 4.03869 4.10277 4.16024 4.26574 4.32617 4.40488 4.54544 4.56652 4.70728 4.71355 4.78774 4.93692 5.02729 5.04092 5.07228 5.11406 5.13894 5.17940 5.33194 5.36131 5.49600 5.52631 5.59731 5.68072 5.72579 5.75651 6.00144 6.07259 6.10963 6.18450 6.31464 6.62470 6.86357 6.97566 7.04759 8.23500 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.017332 B = 0.003011 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.103685 B = 9297.455217 C =10831.071687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.215 4.215 3 C -0.068 4.068 4 C -0.198 4.198 5 C -0.042 4.042 6 C 0.065 3.935 7 N -0.485 5.485 8 C 0.067 3.933 9 C -0.086 4.086 10 C -0.059 4.059 11 C -0.116 4.116 12 C -0.119 4.119 13 C -0.120 4.120 14 C -0.125 4.125 15 C -0.129 4.129 16 C -0.103 4.103 17 C -0.087 4.087 18 C -0.191 4.191 19 C 0.090 3.910 20 C -0.469 4.469 21 H 0.087 0.913 22 C 0.033 3.967 23 N -0.813 5.813 24 Si 0.982 3.018 25 H -0.254 1.254 26 H -0.266 1.266 27 H -0.266 1.266 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.121 0.879 32 H 0.162 0.838 33 H 0.180 0.820 34 H 0.143 0.857 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.140 0.860 38 H 0.117 0.883 39 H 0.134 0.866 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.482 10.387 -1.852 14.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.216 4.216 3 C -0.086 4.086 4 C -0.200 4.200 5 C -0.044 4.044 6 C -0.092 4.092 7 N -0.192 5.192 8 C -0.090 4.090 9 C -0.088 4.088 10 C -0.060 4.060 11 C -0.133 4.133 12 C -0.137 4.137 13 C -0.137 4.137 14 C -0.143 4.143 15 C -0.147 4.147 16 C -0.128 4.128 17 C -0.106 4.106 18 C -0.211 4.211 19 C 0.087 3.913 20 C -0.497 4.497 21 H 0.105 0.895 22 C -0.184 4.184 23 N -0.438 5.438 24 Si 0.803 3.197 25 H -0.178 1.178 26 H -0.190 1.190 27 H -0.191 1.191 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.179 0.821 33 H 0.197 0.803 34 H 0.160 0.840 35 H 0.171 0.829 36 H 0.168 0.832 37 H 0.158 0.842 38 H 0.135 0.865 39 H 0.151 0.849 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.145 11.026 -1.705 15.080 hybrid contribution 0.192 -2.022 0.065 2.032 sum 10.337 9.004 -1.640 13.806 Atomic orbital electron populations 1.20407 0.91138 1.01415 1.00828 1.19888 0.96450 0.92735 1.12513 1.20548 0.92831 0.96988 0.98201 1.18170 0.92993 0.90685 1.18165 1.19870 0.93522 0.94225 0.96789 1.22990 1.00753 0.86682 0.98772 1.67525 1.10613 1.29225 1.11867 1.23129 0.88937 0.98450 0.98468 1.19843 0.93855 0.93899 1.01218 1.18782 0.90259 0.94859 1.02084 1.21489 0.95692 0.96651 0.99500 1.21468 0.93174 0.99926 0.99091 1.21616 1.01439 0.92039 0.98640 1.21378 0.93728 0.99429 0.99775 1.21428 0.95044 0.97817 1.00413 1.21825 0.93609 0.98129 0.99286 1.20666 0.98105 0.92419 0.99362 1.20991 0.94903 0.96720 1.08451 1.17988 0.92354 0.93046 0.87868 1.19978 1.02232 0.93214 1.34313 0.89457 1.26875 0.94428 1.05187 0.91903 1.69867 1.18415 1.33337 1.22189 0.85140 0.79442 0.75870 0.79263 1.17771 1.19030 1.19091 0.92587 0.92877 0.91883 0.86167 0.82085 0.80293 0.83952 0.82866 0.83228 0.84178 0.86502 0.84876 0.87836 0.87780 0.89862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.14 9.39 71.24 0.67 -2.47 16 2 C -0.21 -9.95 5.90 -19.67 -0.12 -10.07 16 3 C -0.07 -2.92 9.01 22.22 0.20 -2.72 16 4 C -0.20 -8.68 5.90 -19.87 -0.12 -8.80 16 5 C -0.04 -1.62 5.89 -19.96 -0.12 -1.74 16 6 C 0.06 2.31 10.60 85.06 0.90 3.21 16 7 N -0.49 -16.26 10.33 -193.85 -2.00 -18.26 16 8 C 0.07 1.97 10.59 84.98 0.90 2.87 16 9 C -0.09 -2.63 5.89 -19.98 -0.12 -2.75 16 10 C -0.06 -1.53 5.88 -20.04 -0.12 -1.65 16 11 C -0.12 -2.32 9.44 22.48 0.21 -2.11 16 12 C -0.12 -1.91 10.03 22.24 0.22 -1.68 16 13 C -0.12 -1.93 10.04 22.31 0.22 -1.70 16 14 C -0.13 -2.46 10.03 22.24 0.22 -2.24 16 15 C -0.13 -3.22 9.44 22.48 0.21 -3.01 16 16 C -0.10 -3.62 8.89 22.95 0.20 -3.42 16 17 C -0.09 -4.06 9.37 22.22 0.21 -3.85 16 18 C -0.19 -9.86 8.62 22.47 0.19 -9.67 16 19 C 0.09 4.66 5.57 -21.28 -0.12 4.55 16 20 C -0.47 -23.73 8.12 23.39 0.19 -23.54 16 21 H 0.09 4.20 6.85 -2.91 -0.02 4.18 16 22 C 0.03 1.56 5.18 85.28 0.44 2.00 16 23 N -0.81 -40.75 10.88 21.84 0.24 -40.52 16 24 Si 0.98 36.16 29.59 68.60 2.03 38.19 16 25 H -0.25 -9.10 7.11 99.48 0.71 -8.40 16 26 H -0.27 -9.49 7.11 99.48 0.71 -8.78 16 27 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 28 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.05 2.12 6.76 -2.39 -0.02 2.10 16 30 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 31 H 0.12 4.42 6.20 -2.91 -0.02 4.40 16 32 H 0.16 5.24 6.19 -2.91 -0.02 5.23 16 33 H 0.18 3.89 6.21 -2.91 -0.02 3.87 16 34 H 0.14 2.24 6.23 -2.91 -0.02 2.23 16 35 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 36 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 37 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 38 H 0.12 3.00 6.27 -2.91 -0.02 2.99 16 39 H 0.13 4.51 4.56 -2.91 -0.01 4.50 16 40 H 0.10 4.34 6.24 -2.91 -0.02 4.32 16 41 H 0.10 5.59 6.14 -2.91 -0.02 5.57 16 42 H 0.29 13.10 8.29 -92.71 -0.77 12.34 16 Total: -1.00 -60.03 346.21 5.63 -54.41 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: 1.07 Total: 34.96 kcal Atomic # 6 Polarization: -73.08 SS G_CDS: 4.30 Total: -68.79 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -1.77 Total: -58.78 kcal Atomic # 14 Polarization: 36.16 SS G_CDS: 2.03 Total: 38.19 kcal Total: -60.03 5.63 -54.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242915214.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.404 kcal (2) G-P(sol) polarization free energy of solvation -60.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds