Wall clock time and date at job start Tue Mar 31 2020 11:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36273 * 120.06256 * 2 1 4 4 C 1.39913 * 120.12343 * 179.97438 * 3 2 1 5 5 C 1.48003 * 119.87908 * 179.97438 * 4 3 2 6 6 C 1.39684 * 120.08611 * 359.97438 * 5 4 3 7 7 C 1.37999 * 120.09839 * 179.97438 * 6 5 4 8 8 C 1.38189 * 120.27112 * 0.02562 * 7 6 5 9 9 C 1.39449 * 120.17181 * 359.97438 * 8 7 6 10 10 C 1.48406 * 120.05282 * 180.02562 * 9 8 7 11 11 C 1.39762 * 120.53345 * 359.72312 * 10 9 8 12 12 C 1.38422 * 118.31060 * 179.71451 * 11 10 9 13 13 C 1.38306 * 119.27900 * 0.57802 * 12 11 10 14 14 N 1.31884 * 121.03238 * 359.68673 * 13 12 11 15 15 C 1.31747 * 121.84916 * 0.02562 * 14 13 12 16 16 C 1.39075 * 119.89726 * 359.74411 * 9 8 7 17 17 C 1.39954 * 120.23894 * 359.97438 * 4 3 2 18 18 C 1.36237 * 120.11821 * 0.04039 * 17 4 3 19 19 C 1.40915 * 120.06336 * 179.97438 * 2 1 3 20 20 C 1.41027 * 120.11661 * 359.74342 * 19 2 1 21 21 H 1.08001 * 120.00341 * 333.60546 * 20 19 2 22 22 C 1.40019 * 119.99988 * 153.60046 * 20 19 2 23 23 N 1.30799 * 119.99803 * 344.03485 * 22 20 19 24 24 Si 1.86795 * 120.00055 * 164.02881 * 22 20 19 25 25 H 1.48508 * 109.47267 * 0.02562 * 24 22 20 26 26 H 1.48492 * 109.47092 * 120.00053 * 24 22 20 27 27 H 1.48497 * 109.47230 * 240.00476 * 24 22 20 28 28 H 1.09004 * 109.47203 * 270.02458 * 1 2 3 29 29 H 1.08999 * 109.47332 * 30.02473 * 1 2 3 30 30 H 1.08997 * 109.46860 * 150.02585 * 1 2 3 31 31 H 1.07996 * 119.93866 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.95171 * 359.97438 * 6 5 4 33 33 H 1.07999 * 119.86721 * 180.02562 * 7 6 5 34 34 H 1.08007 * 119.91361 * 180.02562 * 8 7 6 35 35 H 1.08004 * 120.84558 * 359.97438 * 11 10 9 36 36 H 1.07993 * 120.35626 * 180.26056 * 12 11 10 37 37 H 1.08008 * 119.48445 * 179.69562 * 13 12 11 38 38 H 1.08005 * 119.70191 * 180.02562 * 15 14 13 39 39 H 1.08000 * 120.13554 * 180.24924 * 16 9 8 40 40 H 1.07996 * 119.93400 * 180.02562 * 17 4 3 41 41 H 1.08005 * 120.05740 * 179.97438 * 18 17 4 42 42 H 0.96996 * 119.99454 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1896 1.1794 0.0000 4 6 3.5888 1.1809 0.0005 5 6 4.3247 2.4650 0.0000 6 6 3.6243 3.6735 -0.0017 7 6 4.3102 4.8710 -0.0017 8 6 5.6920 4.8822 -0.0006 9 6 6.4027 3.6823 0.0010 10 6 7.8867 3.6975 0.0027 11 6 8.5844 4.9084 -0.0031 12 6 9.9680 4.8689 0.0049 13 6 10.6097 3.6437 0.0061 14 7 9.9240 2.5171 0.0059 15 6 8.6066 2.5051 0.0041 16 6 5.7186 2.4715 0.0070 17 6 4.2949 -0.0275 0.0016 18 6 3.6223 -1.2122 0.0013 19 6 2.2129 -1.2196 0.0005 20 6 1.5116 -2.4431 0.0066 21 1 0.5178 -2.4939 0.4263 22 6 2.1037 -3.5921 -0.5318 23 7 3.1502 -3.4855 -1.3092 24 14 1.3992 -5.2771 -0.1397 25 1 0.2236 -5.1261 0.7550 26 1 0.9801 -5.9435 -1.3988 27 1 2.4334 -6.1010 0.5360 28 1 -0.3634 0.0004 1.0277 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 1.6497 2.1147 -0.0004 32 1 2.5442 3.6708 -0.0029 33 1 3.7649 5.8032 -0.0025 34 1 6.2231 5.8227 -0.0002 35 1 8.0574 5.8512 -0.0093 36 1 10.5402 5.7848 0.0050 37 1 11.6892 3.6090 0.0073 38 1 8.0801 1.5621 0.0044 39 1 6.2651 1.5400 0.0123 40 1 5.3748 -0.0206 0.0025 41 1 4.1682 -2.1442 0.0017 42 1 3.5601 -4.2814 -1.6824 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243000720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:13 Heat of formation + Delta-G solvation = 64.326720 kcal Electronic energy + Delta-G solvation = -23860.695276 eV Core-core repulsion = 20541.185370 eV Total energy + Delta-G solvation = -3319.509906 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.30613 -38.84738 -37.52789 -34.18599 -33.21797 -32.23316 -32.04456 -30.59548 -29.33607 -28.50674 -26.33635 -25.04780 -23.89555 -23.77268 -21.85757 -21.60821 -19.98232 -19.21007 -17.66008 -17.40458 -16.28977 -16.14163 -15.67627 -15.42620 -14.42777 -14.35615 -14.08082 -14.03256 -13.56131 -13.40557 -13.27512 -13.11605 -12.82770 -12.70210 -12.43301 -12.04652 -11.81037 -11.73088 -11.33551 -11.27310 -11.20427 -10.90742 -10.80142 -10.68297 -10.44664 -10.08028 -9.65654 -9.55998 -9.50097 -9.42358 -9.33965 -8.63243 -8.00588 -7.51900 -7.10343 -6.91732 -4.47804 0.65784 1.18434 1.56918 2.03895 2.72675 2.96956 2.99501 3.02278 3.13304 3.77355 3.79496 4.25394 4.35310 4.64504 4.69280 4.71904 4.85166 4.96097 5.21178 5.27412 5.42839 5.53670 5.54863 5.68461 5.79128 5.83888 5.98053 6.06899 6.09847 6.14648 6.31718 6.39649 6.44128 6.58722 6.59867 6.64050 6.76549 6.83567 6.86455 6.91216 6.98620 7.13876 7.32685 7.37029 7.51380 7.79897 7.90944 7.92700 8.00500 8.12271 8.44657 8.68354 8.80339 9.95889 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.016851 B = 0.003045 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.192698 B = 9192.143360 C =10767.408036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.202 4.202 3 C -0.059 4.059 4 C -0.205 4.205 5 C 0.029 3.971 6 C -0.139 4.139 7 C -0.108 4.108 8 C -0.149 4.149 9 C -0.045 4.045 10 C -0.079 4.079 11 C -0.075 4.075 12 C -0.171 4.171 13 C 0.085 3.915 14 N -0.481 5.481 15 C 0.105 3.895 16 C -0.129 4.129 17 C -0.078 4.078 18 C -0.168 4.168 19 C 0.124 3.876 20 C -0.441 4.441 21 H 0.085 0.915 22 C 0.073 3.927 23 N -0.778 5.778 24 Si 0.910 3.090 25 H -0.258 1.258 26 H -0.272 1.272 27 H -0.270 1.270 28 H 0.042 0.958 29 H 0.038 0.962 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.153 0.847 38 H 0.160 0.840 39 H 0.124 0.876 40 H 0.091 0.909 41 H 0.119 0.881 42 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.725 11.702 1.661 13.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.203 4.203 3 C -0.077 4.077 4 C -0.206 4.206 5 C 0.029 3.971 6 C -0.157 4.157 7 C -0.126 4.126 8 C -0.167 4.167 9 C -0.045 4.045 10 C -0.081 4.081 11 C -0.101 4.101 12 C -0.191 4.191 13 C -0.072 4.072 14 N -0.189 5.189 15 C -0.052 4.052 16 C -0.147 4.147 17 C -0.096 4.096 18 C -0.187 4.187 19 C 0.121 3.879 20 C -0.469 4.469 21 H 0.103 0.897 22 C -0.148 4.148 23 N -0.401 5.401 24 Si 0.734 3.266 25 H -0.182 1.182 26 H -0.198 1.198 27 H -0.195 1.195 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.170 0.830 38 H 0.177 0.823 39 H 0.141 0.859 40 H 0.109 0.891 41 H 0.136 0.864 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.342 10.742 1.506 13.099 hybrid contribution -0.612 0.102 0.007 0.621 sum 6.730 10.844 1.513 12.852 Atomic orbital electron populations 1.20414 0.93366 1.00694 0.99764 1.19456 0.94541 0.93030 1.13304 1.20253 0.92764 0.96114 0.98581 1.18021 0.92528 0.90423 1.19657 1.18936 0.92079 0.93208 0.92923 1.21297 0.99909 0.91749 1.02731 1.20860 0.93874 0.97629 1.00284 1.20900 0.94113 0.96459 1.05234 1.18421 0.89999 0.93921 1.02197 1.19918 0.93779 0.94273 1.00110 1.21674 0.94055 0.98109 0.96227 1.22055 0.95023 0.99632 1.02416 1.22772 1.00336 0.87852 0.96191 1.67666 1.08727 1.30867 1.11627 1.23023 0.89470 0.97988 0.94722 1.21255 0.93934 0.96639 1.02874 1.20505 0.97322 0.92479 0.99321 1.20983 0.94482 0.96630 1.06605 1.17609 0.91919 0.91718 0.86692 1.19759 1.02259 0.92439 1.32477 0.89692 1.26048 0.94184 1.01815 0.92707 1.69812 1.17604 1.32182 1.20513 0.86212 0.80188 0.80755 0.79422 1.18174 1.19769 1.19471 0.93927 0.94255 0.92006 0.88923 0.86158 0.86637 0.86902 0.84678 0.84868 0.82976 0.82301 0.85877 0.89087 0.86354 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.68 9.39 36.00 0.34 -1.34 16 2 C -0.20 -4.64 5.90 -104.32 -0.62 -5.26 16 3 C -0.06 -1.27 8.99 -39.66 -0.36 -1.63 16 4 C -0.21 -4.44 5.90 -104.62 -0.62 -5.05 16 5 C 0.03 0.54 5.88 -104.93 -0.62 -0.08 16 6 C -0.14 -2.31 9.42 -39.13 -0.37 -2.68 16 7 C -0.11 -1.54 10.02 -39.69 -0.40 -1.94 16 8 C -0.15 -2.07 9.44 -39.15 -0.37 -2.44 16 9 C -0.04 -0.68 5.87 -104.95 -0.62 -1.30 16 10 C -0.08 -1.09 5.89 -104.75 -0.62 -1.71 16 11 C -0.08 -0.85 9.53 -38.94 -0.37 -1.22 16 12 C -0.17 -1.69 10.10 -39.49 -0.40 -2.09 16 13 C 0.09 0.95 11.17 -17.50 -0.20 0.75 16 14 N -0.48 -6.78 10.35 -12.97 -0.13 -6.91 16 15 C 0.11 1.51 10.60 -17.20 -0.18 1.33 16 16 C -0.13 -2.23 8.81 -38.84 -0.34 -2.57 16 17 C -0.08 -1.76 9.36 -39.66 -0.37 -2.13 16 18 C -0.17 -4.16 8.62 -39.28 -0.34 -4.49 16 19 C 0.12 3.10 5.56 -106.80 -0.59 2.51 16 20 C -0.44 -10.86 8.09 -37.86 -0.31 -11.16 16 21 H 0.09 2.00 6.89 -52.49 -0.36 1.64 16 22 C 0.07 1.70 5.16 -17.32 -0.09 1.61 16 23 N -0.78 -18.95 10.97 55.55 0.61 -18.34 16 24 Si 0.91 17.52 29.59 -169.99 -5.03 12.49 16 25 H -0.26 -4.92 7.11 56.52 0.40 -4.51 16 26 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 27 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 30 H 0.06 1.24 6.79 -51.93 -0.35 0.88 16 31 H 0.09 1.76 6.17 -52.49 -0.32 1.44 16 32 H 0.12 1.88 6.17 -52.49 -0.32 1.56 16 33 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.11 1.25 6.26 -52.48 -0.33 0.92 16 35 H 0.14 1.23 6.32 -52.48 -0.33 0.90 16 36 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.15 1.23 8.06 -52.48 -0.42 0.80 16 38 H 0.16 2.20 6.22 -52.48 -0.33 1.87 16 39 H 0.12 2.05 4.35 -52.49 -0.23 1.82 16 40 H 0.09 1.85 6.17 -52.49 -0.32 1.53 16 41 H 0.12 3.01 6.23 -52.48 -0.33 2.69 16 42 H 0.28 6.27 8.29 -40.82 -0.34 5.93 16 LS Contribution 346.18 15.07 5.22 5.22 Total: -1.00 -27.29 346.18 -11.24 -38.53 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -4.47 Total: 9.92 kcal Atomic # 6 Polarization: -33.48 SS G_CDS: -7.43 Total: -40.90 kcal Atomic # 7 Polarization: -25.72 SS G_CDS: 0.48 Total: -25.25 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.29 -11.24 -38.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243000720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.855 kcal (2) G-P(sol) polarization free energy of solvation -27.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds