Wall clock time and date at job start Tue Mar 31 2020 11:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36273 * 120.06256 * 2 1 4 4 C 1.39913 * 120.12343 * 179.97438 * 3 2 1 5 5 C 1.48003 * 119.87908 * 179.97438 * 4 3 2 6 6 C 1.39684 * 120.08611 * 359.97438 * 5 4 3 7 7 C 1.37999 * 120.09839 * 179.97438 * 6 5 4 8 8 C 1.38189 * 120.27112 * 0.02562 * 7 6 5 9 9 C 1.39449 * 120.17181 * 359.97438 * 8 7 6 10 10 C 1.48406 * 120.05282 * 180.02562 * 9 8 7 11 11 C 1.39762 * 120.53345 * 359.72312 * 10 9 8 12 12 C 1.38422 * 118.31060 * 179.71451 * 11 10 9 13 13 C 1.38306 * 119.27900 * 0.57802 * 12 11 10 14 14 N 1.31884 * 121.03238 * 359.68673 * 13 12 11 15 15 C 1.31747 * 121.84916 * 0.02562 * 14 13 12 16 16 C 1.39075 * 119.89726 * 359.74411 * 9 8 7 17 17 C 1.39954 * 120.23894 * 359.97438 * 4 3 2 18 18 C 1.36237 * 120.11821 * 0.04039 * 17 4 3 19 19 C 1.40915 * 120.06336 * 179.97438 * 2 1 3 20 20 C 1.41027 * 120.11661 * 359.74342 * 19 2 1 21 21 H 1.08001 * 120.00341 * 333.60546 * 20 19 2 22 22 C 1.40019 * 119.99988 * 153.60046 * 20 19 2 23 23 N 1.30799 * 119.99803 * 344.03485 * 22 20 19 24 24 Si 1.86795 * 120.00055 * 164.02881 * 22 20 19 25 25 H 1.48508 * 109.47267 * 0.02562 * 24 22 20 26 26 H 1.48492 * 109.47092 * 120.00053 * 24 22 20 27 27 H 1.48497 * 109.47230 * 240.00476 * 24 22 20 28 28 H 1.09004 * 109.47203 * 270.02458 * 1 2 3 29 29 H 1.08999 * 109.47332 * 30.02473 * 1 2 3 30 30 H 1.08997 * 109.46860 * 150.02585 * 1 2 3 31 31 H 1.07996 * 119.93866 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.95171 * 359.97438 * 6 5 4 33 33 H 1.07999 * 119.86721 * 180.02562 * 7 6 5 34 34 H 1.08007 * 119.91361 * 180.02562 * 8 7 6 35 35 H 1.08004 * 120.84558 * 359.97438 * 11 10 9 36 36 H 1.07993 * 120.35626 * 180.26056 * 12 11 10 37 37 H 1.08008 * 119.48445 * 179.69562 * 13 12 11 38 38 H 1.08005 * 119.70191 * 180.02562 * 15 14 13 39 39 H 1.08000 * 120.13554 * 180.24924 * 16 9 8 40 40 H 1.07996 * 119.93400 * 180.02562 * 17 4 3 41 41 H 1.08005 * 120.05740 * 179.97438 * 18 17 4 42 42 H 0.96996 * 119.99454 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1896 1.1794 0.0000 4 6 3.5888 1.1809 0.0005 5 6 4.3247 2.4650 0.0000 6 6 3.6243 3.6735 -0.0017 7 6 4.3102 4.8710 -0.0017 8 6 5.6920 4.8822 -0.0006 9 6 6.4027 3.6823 0.0010 10 6 7.8867 3.6975 0.0027 11 6 8.5844 4.9084 -0.0031 12 6 9.9680 4.8689 0.0049 13 6 10.6097 3.6437 0.0061 14 7 9.9240 2.5171 0.0059 15 6 8.6066 2.5051 0.0041 16 6 5.7186 2.4715 0.0070 17 6 4.2949 -0.0275 0.0016 18 6 3.6223 -1.2122 0.0013 19 6 2.2129 -1.2196 0.0005 20 6 1.5116 -2.4431 0.0066 21 1 0.5178 -2.4939 0.4263 22 6 2.1037 -3.5921 -0.5318 23 7 3.1502 -3.4855 -1.3092 24 14 1.3992 -5.2771 -0.1397 25 1 0.2236 -5.1261 0.7550 26 1 0.9801 -5.9435 -1.3988 27 1 2.4334 -6.1010 0.5360 28 1 -0.3634 0.0004 1.0277 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 1.6497 2.1147 -0.0004 32 1 2.5442 3.6708 -0.0029 33 1 3.7649 5.8032 -0.0025 34 1 6.2231 5.8227 -0.0002 35 1 8.0574 5.8512 -0.0093 36 1 10.5402 5.7848 0.0050 37 1 11.6892 3.6090 0.0073 38 1 8.0801 1.5621 0.0044 39 1 6.2651 1.5400 0.0123 40 1 5.3748 -0.0206 0.0025 41 1 4.1682 -2.1442 0.0017 42 1 3.5601 -4.2814 -1.6824 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243000720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:12 Heat of formation + Delta-G solvation = 53.651727 kcal Electronic energy + Delta-G solvation = -23861.158178 eV Core-core repulsion = 20541.185370 eV Total energy + Delta-G solvation = -3319.972808 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.31490 -40.24355 -39.03443 -35.81473 -34.46037 -33.70451 -33.02271 -32.18709 -30.66570 -29.86361 -27.96980 -26.62631 -24.98055 -24.90548 -23.32375 -22.88826 -21.41828 -20.75978 -19.19402 -18.66126 -17.50255 -17.17306 -17.03967 -16.79671 -15.86520 -15.79762 -15.41302 -15.02624 -14.82946 -14.69291 -14.56780 -14.46767 -14.38205 -13.99270 -13.74792 -13.57895 -13.33261 -12.93466 -12.89571 -12.81199 -12.74106 -12.43249 -12.23313 -12.10186 -11.85320 -11.33353 -11.24782 -11.13745 -11.03083 -10.46967 -10.41460 -10.07490 -9.29678 -9.17637 -8.77476 -8.60119 -6.30045 -0.37823 0.17570 0.29747 0.89022 1.14218 1.21941 1.37545 1.52170 1.58969 2.17247 2.60897 2.86070 3.20495 3.40674 3.68674 3.75265 3.80987 3.96223 4.02192 4.08764 4.22354 4.25702 4.41176 4.45334 4.54546 4.61383 4.67612 4.72637 4.78943 4.93393 5.03419 5.05574 5.11963 5.13194 5.15294 5.23288 5.26631 5.36041 5.43802 5.56793 5.66849 5.68915 5.75993 5.77814 5.99206 6.12582 6.19415 6.28499 6.34089 6.65007 6.88806 6.99595 7.01734 8.26596 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.016851 B = 0.003045 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.192698 B = 9192.143360 C =10767.408036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.216 4.216 3 C -0.071 4.071 4 C -0.197 4.197 5 C -0.008 4.008 6 C -0.142 4.142 7 C -0.104 4.104 8 C -0.132 4.132 9 C -0.048 4.048 10 C -0.099 4.099 11 C -0.071 4.071 12 C -0.158 4.158 13 C 0.079 3.921 14 N -0.512 5.512 15 C 0.082 3.918 16 C -0.142 4.142 17 C -0.093 4.093 18 C -0.192 4.192 19 C 0.089 3.911 20 C -0.475 4.475 21 H 0.086 0.914 22 C 0.032 3.968 23 N -0.818 5.818 24 Si 0.982 3.018 25 H -0.254 1.254 26 H -0.266 1.266 27 H -0.267 1.267 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.122 0.878 32 H 0.129 0.871 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.166 0.834 36 H 0.177 0.823 37 H 0.183 0.817 38 H 0.143 0.857 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.531 15.977 1.942 17.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.217 4.217 3 C -0.089 4.089 4 C -0.198 4.198 5 C -0.008 4.008 6 C -0.160 4.160 7 C -0.121 4.121 8 C -0.150 4.150 9 C -0.049 4.049 10 C -0.101 4.101 11 C -0.097 4.097 12 C -0.177 4.177 13 C -0.077 4.077 14 N -0.221 5.221 15 C -0.075 4.075 16 C -0.160 4.160 17 C -0.112 4.112 18 C -0.211 4.211 19 C 0.086 3.914 20 C -0.504 4.504 21 H 0.104 0.896 22 C -0.184 4.184 23 N -0.444 5.444 24 Si 0.802 3.198 25 H -0.177 1.177 26 H -0.191 1.191 27 H -0.192 1.192 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.140 0.860 32 H 0.147 0.853 33 H 0.173 0.827 34 H 0.171 0.829 35 H 0.183 0.817 36 H 0.194 0.806 37 H 0.200 0.800 38 H 0.161 0.839 39 H 0.130 0.870 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.141 15.030 1.789 17.187 hybrid contribution -0.557 -0.811 -0.069 0.986 sum 7.584 14.219 1.720 16.206 Atomic orbital electron populations 1.20393 0.91141 1.01347 1.00759 1.19921 0.96465 0.92815 1.12486 1.20571 0.92923 0.96885 0.98520 1.18423 0.93103 0.91422 1.16821 1.18928 0.92716 0.92854 0.96310 1.21496 1.00515 0.91790 1.02224 1.21289 0.94243 0.98092 0.98516 1.21414 0.94279 0.97293 1.02008 1.18639 0.91081 0.93680 1.01476 1.19908 0.93007 0.95251 1.01959 1.22058 0.94866 0.97962 0.94764 1.22503 0.94700 1.00637 0.99885 1.23422 1.01814 0.87733 0.94751 1.67642 1.08633 1.32912 1.12885 1.22919 0.90060 0.98133 0.96355 1.21310 0.93650 0.97631 1.03449 1.20700 0.98010 0.92688 0.99773 1.20949 0.94993 0.96575 1.08598 1.17960 0.92213 0.93129 0.88102 1.19919 1.02750 0.93338 1.34382 0.89582 1.26868 0.94349 1.05199 0.91966 1.69881 1.19252 1.33288 1.21939 0.85154 0.79394 0.75942 0.79278 1.17703 1.19055 1.19164 0.92631 0.91834 0.93011 0.86049 0.85350 0.82699 0.82882 0.81685 0.80596 0.80031 0.83934 0.86996 0.88201 0.88345 0.90030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.14 9.39 71.24 0.67 -2.48 16 2 C -0.22 -10.24 5.90 -19.67 -0.12 -10.36 16 3 C -0.07 -3.12 8.99 22.22 0.20 -2.92 16 4 C -0.20 -8.81 5.90 -19.87 -0.12 -8.93 16 5 C -0.01 -0.30 5.88 -20.06 -0.12 -0.42 16 6 C -0.14 -4.43 9.42 22.56 0.21 -4.21 16 7 C -0.10 -2.50 10.02 22.20 0.22 -2.28 16 8 C -0.13 -3.10 9.44 22.55 0.21 -2.88 16 9 C -0.05 -1.39 5.87 -20.08 -0.12 -1.51 16 10 C -0.10 -2.59 5.89 -19.95 -0.12 -2.71 16 11 C -0.07 -1.31 9.53 22.68 0.22 -1.09 16 12 C -0.16 -2.39 10.10 22.33 0.23 -2.16 16 13 C 0.08 1.55 11.17 84.70 0.95 2.50 16 14 N -0.51 -14.21 10.35 -194.96 -2.02 -16.23 16 15 C 0.08 2.39 10.60 84.96 0.90 3.29 16 16 C -0.14 -5.02 8.81 22.75 0.20 -4.82 16 17 C -0.09 -4.55 9.36 22.22 0.21 -4.34 16 18 C -0.19 -10.31 8.62 22.47 0.19 -10.11 16 19 C 0.09 4.73 5.56 -21.28 -0.12 4.61 16 20 C -0.48 -24.83 8.09 23.39 0.19 -24.64 16 21 H 0.09 4.27 6.89 -2.91 -0.02 4.25 16 22 C 0.03 1.59 5.16 85.28 0.44 2.03 16 23 N -0.82 -42.71 10.97 21.84 0.24 -42.47 16 24 Si 0.98 37.53 29.59 68.60 2.03 39.56 16 25 H -0.25 -9.37 7.11 99.48 0.71 -8.67 16 26 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 27 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 28 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 29 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 30 H 0.05 2.12 6.79 -2.39 -0.02 2.10 16 31 H 0.12 4.48 6.17 -2.91 -0.02 4.47 16 32 H 0.13 3.70 6.17 -2.91 -0.02 3.68 16 33 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 34 H 0.15 2.36 6.26 -2.91 -0.02 2.34 16 35 H 0.17 1.96 6.32 -2.91 -0.02 1.94 16 36 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 37 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 38 H 0.14 4.39 6.22 -2.91 -0.02 4.37 16 39 H 0.11 4.06 4.35 -2.91 -0.01 4.05 16 40 H 0.10 4.48 6.17 -2.91 -0.02 4.47 16 41 H 0.10 5.54 6.23 -2.91 -0.02 5.52 16 42 H 0.29 13.64 8.29 -92.71 -0.77 12.87 16 Total: -1.00 -65.04 346.18 5.65 -59.39 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: 1.07 Total: 33.19 kcal Atomic # 6 Polarization: -77.77 SS G_CDS: 4.33 Total: -73.44 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: -1.78 Total: -58.70 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 2.03 Total: 39.56 kcal Total: -65.04 5.65 -59.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243000720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.046 kcal (2) G-P(sol) polarization free energy of solvation -65.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds