Wall clock time and date at job start Tue Mar 31 2020 11:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38382 * 119.88399 * 2 1 4 4 C 1.38188 * 120.30548 * 180.02562 * 3 2 1 5 5 C 1.38574 * 120.06837 * 359.97438 * 4 3 2 6 6 O 1.35846 * 120.12274 * 179.97438 * 5 4 3 7 7 C 1.42902 * 116.99850 * 5.41345 * 6 5 4 8 8 C 1.52997 * 109.47056 * 154.15452 * 7 6 5 9 9 C 1.53003 * 109.46736 * 274.14917 * 7 6 5 10 10 C 1.39811 * 119.75671 * 359.97438 * 5 4 3 11 11 C 1.48325 * 120.14458 * 179.97438 * 10 5 4 12 12 C 1.39031 * 120.41973 * 244.74287 * 11 10 5 13 13 C 1.40950 * 118.12665 * 179.72632 * 12 11 10 14 14 C 1.41369 * 120.57327 * 180.30357 * 13 12 11 15 15 H 1.07997 * 119.99896 * 204.27035 * 14 13 12 16 16 C 1.39895 * 119.99873 * 24.26686 * 14 13 12 17 17 N 1.30864 * 120.00236 * 15.67499 * 16 14 13 18 18 Si 1.86800 * 119.99998 * 195.67521 * 16 14 13 19 19 H 1.48502 * 109.47056 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47127 * 120.00030 * 18 16 14 21 21 H 1.48500 * 109.47521 * 240.00287 * 18 16 14 22 22 C 1.40812 * 118.85346 * 0.57005 * 13 12 11 23 23 N 1.31506 * 120.70374 * 359.68575 * 22 13 12 24 24 C 1.32159 * 122.07569 * 0.02777 * 23 22 13 25 25 F 1.35099 * 119.45563 * 180.02562 * 24 23 22 26 26 C 1.38009 * 119.88070 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.46835 * 269.97957 * 1 2 3 28 28 H 1.09002 * 109.46827 * 29.97748 * 1 2 3 29 29 H 1.08994 * 109.47079 * 149.97972 * 1 2 3 30 30 H 1.08000 * 119.84897 * 359.97438 * 3 2 1 31 31 H 1.08006 * 119.96732 * 179.97438 * 4 3 2 32 32 H 1.08992 * 109.47284 * 34.15333 * 7 6 5 33 33 H 1.09005 * 109.47335 * 59.99524 * 8 7 6 34 34 H 1.09000 * 109.47331 * 179.97438 * 8 7 6 35 35 H 1.08999 * 109.47164 * 299.99515 * 8 7 6 36 36 H 1.08994 * 109.47124 * 179.97438 * 9 7 6 37 37 H 1.08996 * 109.47164 * 300.00499 * 9 7 6 38 38 H 1.09003 * 109.46947 * 59.99893 * 9 7 6 39 39 H 1.08001 * 120.93150 * 359.97438 * 12 11 10 40 40 H 0.96995 * 120.00162 * 179.97438 * 17 16 14 41 41 H 1.07994 * 119.64562 * 179.71197 * 22 13 12 42 42 H 1.08005 * 120.03698 * 0.24957 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1998 0.0000 4 6 3.5783 1.2100 -0.0005 5 6 4.2814 0.0159 -0.0005 6 8 5.6399 0.0246 -0.0016 7 6 6.2805 1.2964 0.1175 8 6 7.6704 1.1119 0.7298 9 6 6.4139 1.9318 -1.2679 10 6 3.5876 -1.1979 0.0005 11 6 4.3315 -2.4811 0.0000 12 6 4.2407 -3.3470 -1.0840 13 6 4.9726 -4.5506 -1.0361 14 6 4.9231 -5.4656 -2.1126 15 1 5.1358 -6.5108 -1.9432 16 6 4.5984 -5.0172 -3.3974 17 7 4.6409 -3.7389 -3.6745 18 14 4.1041 -6.2430 -4.7174 19 1 4.1339 -7.6165 -4.1535 20 1 2.7316 -5.9329 -5.1919 21 1 5.0534 -6.1543 -5.8559 22 6 5.7495 -4.8286 0.1049 23 7 5.7981 -3.9789 1.1074 24 6 5.1298 -2.8388 1.0942 25 9 5.2184 -2.0044 2.1530 26 6 2.1945 -1.1966 -0.0005 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8897 -0.5141 30 1 1.6521 2.1326 -0.0004 31 1 4.1109 2.1496 -0.0009 32 1 5.6841 1.9450 0.7589 33 1 8.2669 0.4631 0.0883 34 1 8.1594 2.0819 0.8202 35 1 7.5755 0.6591 1.7168 36 1 6.9021 2.9021 -1.1772 37 1 7.0103 1.2831 -1.9094 38 1 5.4237 2.0632 -1.7042 39 1 3.6298 -3.1022 -1.9404 40 1 4.4162 -3.4281 -4.5654 41 1 6.3116 -5.7492 0.1572 42 1 1.6532 -2.1312 -0.0050 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243091990.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:59 Heat of formation + Delta-G solvation = -45.995274 kcal Electronic energy + Delta-G solvation = -26456.443683 eV Core-core repulsion = 22701.380632 eV Total energy + Delta-G solvation = -3755.063051 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -47.41095 -40.00576 -38.20699 -37.48394 -34.11459 -33.45344 -32.21376 -31.26126 -30.27448 -28.52857 -27.23026 -26.02673 -25.42923 -23.36365 -22.33783 -21.69608 -20.36418 -20.12767 -17.99045 -17.24452 -16.49982 -15.99082 -15.64114 -15.21792 -15.12217 -14.71202 -14.46408 -14.24598 -13.87514 -13.60715 -13.46544 -13.12794 -12.90728 -12.50976 -12.34780 -12.27119 -12.18781 -12.05354 -11.90474 -11.80938 -11.67970 -11.49480 -11.28925 -11.22181 -11.09648 -10.99409 -10.67619 -10.45632 -10.33612 -9.97714 -9.45005 -8.74200 -8.35719 -8.14004 -7.67295 -7.33664 -6.92953 -4.55160 1.61884 1.79664 2.44651 2.75421 2.98882 3.03548 3.06800 3.55686 3.79393 4.09031 4.43777 4.88263 5.00110 5.07837 5.10593 5.16623 5.22760 5.28283 5.46045 5.47653 5.58888 5.63687 5.68019 5.77348 5.81190 5.87669 5.90411 6.00116 6.13594 6.18384 6.24339 6.29078 6.42034 6.58979 6.63748 6.68889 6.85990 6.93538 7.00565 7.06220 7.19650 7.55945 7.72298 7.83861 7.91388 8.30157 8.56531 8.56717 9.31318 9.98088 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010919 B = 0.005102 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.635171 B = 5487.012616 C = 6143.303878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.131 4.131 3 C -0.090 4.090 4 C -0.213 4.213 5 C 0.146 3.854 6 O -0.290 6.290 7 C 0.076 3.924 8 C -0.148 4.148 9 C -0.178 4.178 10 C -0.044 4.044 11 C -0.090 4.090 12 C -0.095 4.095 13 C 0.054 3.946 14 C -0.443 4.443 15 H 0.087 0.913 16 C 0.072 3.928 17 N -0.786 5.786 18 Si 0.914 3.086 19 H -0.258 1.258 20 H -0.270 1.270 21 H -0.273 1.273 22 C 0.009 3.991 23 N -0.493 5.493 24 C 0.179 3.821 25 F -0.145 7.145 26 C -0.068 4.068 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.117 0.883 31 H 0.125 0.875 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.139 0.861 40 H 0.284 0.716 41 H 0.137 0.863 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.528 10.229 1.501 10.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.132 4.132 3 C -0.108 4.108 4 C -0.232 4.232 5 C 0.100 3.900 6 O -0.203 6.203 7 C 0.020 3.980 8 C -0.205 4.205 9 C -0.236 4.236 10 C -0.045 4.045 11 C -0.094 4.094 12 C -0.121 4.121 13 C 0.049 3.951 14 C -0.472 4.472 15 H 0.105 0.895 16 C -0.147 4.147 17 N -0.410 5.410 18 Si 0.738 3.262 19 H -0.181 1.181 20 H -0.196 1.196 21 H -0.198 1.198 22 C -0.152 4.152 23 N -0.205 5.205 24 C 0.025 3.975 25 F -0.125 7.125 26 C -0.086 4.086 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.135 0.865 31 H 0.143 0.857 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.156 0.844 40 H 0.096 0.904 41 H 0.154 0.846 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.901 10.090 2.049 10.697 hybrid contribution -0.591 0.198 -1.287 1.430 sum -3.492 10.288 0.761 10.891 Atomic orbital electron populations 1.20660 0.91438 1.02263 1.01718 1.19637 0.95826 0.92871 1.04836 1.20675 0.93161 0.97178 0.99771 1.21085 0.95151 0.96694 1.10234 1.18987 0.82613 0.93092 0.95311 1.86289 1.16011 1.30855 1.87130 1.22372 0.94453 0.84444 0.96750 1.21824 0.94492 1.02259 1.01899 1.22369 1.02999 1.00855 0.97335 1.18094 0.92228 0.90641 1.03555 1.18918 1.00501 0.94503 0.95472 1.21728 0.99856 0.94253 0.96235 1.18472 0.90183 0.93002 0.93406 1.19553 1.40134 0.96062 0.91475 0.89529 1.25996 0.92589 0.95903 1.00187 1.69798 1.33372 1.15257 1.22612 0.86158 0.79021 0.81317 0.79745 1.18136 1.19552 1.19798 1.22268 1.02746 0.98763 0.91416 1.66270 1.20752 1.02714 1.30797 1.17500 1.04373 0.89810 0.85792 1.91388 1.95741 1.69492 1.55871 1.20935 0.92023 0.97730 0.97952 0.91816 0.92120 0.91783 0.86467 0.85695 0.91350 0.91415 0.91034 0.91523 0.91498 0.91274 0.91951 0.84392 0.90447 0.84605 0.85519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 10.01 36.01 0.36 -0.87 16 2 C -0.13 -2.04 5.88 -104.65 -0.61 -2.65 16 3 C -0.09 -1.32 9.68 -39.55 -0.38 -1.70 16 4 C -0.21 -3.41 8.28 -39.48 -0.33 -3.74 16 5 C 0.15 2.86 6.42 -38.87 -0.25 2.61 16 6 O -0.29 -5.78 9.02 -19.26 -0.17 -5.96 16 7 C 0.08 1.12 2.84 -26.73 -0.08 1.05 16 8 C -0.15 -1.96 9.56 37.16 0.36 -1.60 16 9 C -0.18 -2.29 9.20 37.16 0.34 -1.95 16 10 C -0.04 -0.93 5.03 -104.76 -0.53 -1.46 16 11 C -0.09 -2.20 4.95 -104.76 -0.52 -2.72 16 12 C -0.10 -2.42 8.49 -38.26 -0.33 -2.74 16 13 C 0.05 1.39 5.59 -106.71 -0.60 0.79 16 14 C -0.44 -10.95 9.08 -37.77 -0.34 -11.29 16 15 H 0.09 2.02 7.89 -52.49 -0.41 1.60 16 16 C 0.07 1.70 5.21 -17.34 -0.09 1.61 16 17 N -0.79 -19.27 10.85 55.54 0.60 -18.66 16 18 Si 0.91 17.51 29.59 -169.99 -5.03 12.48 16 19 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 20 H -0.27 -5.12 7.11 56.52 0.40 -4.71 16 21 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 22 C 0.01 0.22 10.96 -16.72 -0.18 0.04 16 23 N -0.49 -12.80 10.33 -12.58 -0.13 -12.93 16 24 C 0.18 4.58 8.11 -16.72 -0.14 4.44 16 25 F -0.15 -3.59 16.69 2.25 0.04 -3.56 16 26 C -0.07 -1.26 9.38 -39.27 -0.37 -1.63 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 29 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 30 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.13 1.67 5.46 -52.48 -0.29 1.38 16 32 H 0.07 0.90 6.25 -51.93 -0.32 0.58 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.82 7.02 -51.93 -0.36 0.46 16 39 H 0.14 3.56 6.17 -52.49 -0.32 3.24 16 40 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 41 H 0.14 3.06 8.06 -52.49 -0.42 2.64 16 42 H 0.13 2.23 8.06 -52.48 -0.42 1.81 16 LS Contribution 356.74 15.07 5.38 5.38 Total: -1.00 -29.01 356.74 -8.49 -37.50 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -5.49 Total: 7.56 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -3.68 Total: -21.81 kcal Atomic # 7 Polarization: -32.07 SS G_CDS: 0.47 Total: -31.59 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.17 Total: -5.96 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.04 Total: -3.56 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.48 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.01 -8.49 -37.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243091990.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.494 kcal (2) G-P(sol) polarization free energy of solvation -29.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds