Wall clock time and date at job start Tue Mar 31 2020 11:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38382 * 119.88399 * 2 1 4 4 C 1.38188 * 120.30548 * 180.02562 * 3 2 1 5 5 C 1.38574 * 120.06837 * 359.97438 * 4 3 2 6 6 O 1.35846 * 120.12274 * 179.97438 * 5 4 3 7 7 C 1.42902 * 116.99850 * 5.41345 * 6 5 4 8 8 C 1.52997 * 109.47056 * 154.15452 * 7 6 5 9 9 C 1.53003 * 109.46736 * 274.14917 * 7 6 5 10 10 C 1.39811 * 119.75671 * 359.97438 * 5 4 3 11 11 C 1.48325 * 120.14458 * 179.97438 * 10 5 4 12 12 C 1.39031 * 120.41973 * 244.74287 * 11 10 5 13 13 C 1.40950 * 118.12665 * 179.72632 * 12 11 10 14 14 C 1.41369 * 120.57327 * 180.30357 * 13 12 11 15 15 H 1.07997 * 119.99896 * 204.27035 * 14 13 12 16 16 C 1.39895 * 119.99873 * 24.26686 * 14 13 12 17 17 N 1.30864 * 120.00236 * 15.67499 * 16 14 13 18 18 Si 1.86800 * 119.99998 * 195.67521 * 16 14 13 19 19 H 1.48502 * 109.47056 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47127 * 120.00030 * 18 16 14 21 21 H 1.48500 * 109.47521 * 240.00287 * 18 16 14 22 22 C 1.40812 * 118.85346 * 0.57005 * 13 12 11 23 23 N 1.31506 * 120.70374 * 359.68575 * 22 13 12 24 24 C 1.32159 * 122.07569 * 0.02777 * 23 22 13 25 25 F 1.35099 * 119.45563 * 180.02562 * 24 23 22 26 26 C 1.38009 * 119.88070 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.46835 * 269.97957 * 1 2 3 28 28 H 1.09002 * 109.46827 * 29.97748 * 1 2 3 29 29 H 1.08994 * 109.47079 * 149.97972 * 1 2 3 30 30 H 1.08000 * 119.84897 * 359.97438 * 3 2 1 31 31 H 1.08006 * 119.96732 * 179.97438 * 4 3 2 32 32 H 1.08992 * 109.47284 * 34.15333 * 7 6 5 33 33 H 1.09005 * 109.47335 * 59.99524 * 8 7 6 34 34 H 1.09000 * 109.47331 * 179.97438 * 8 7 6 35 35 H 1.08999 * 109.47164 * 299.99515 * 8 7 6 36 36 H 1.08994 * 109.47124 * 179.97438 * 9 7 6 37 37 H 1.08996 * 109.47164 * 300.00499 * 9 7 6 38 38 H 1.09003 * 109.46947 * 59.99893 * 9 7 6 39 39 H 1.08001 * 120.93150 * 359.97438 * 12 11 10 40 40 H 0.96995 * 120.00162 * 179.97438 * 17 16 14 41 41 H 1.07994 * 119.64562 * 179.71197 * 22 13 12 42 42 H 1.08005 * 120.03698 * 0.24957 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1998 0.0000 4 6 3.5783 1.2100 -0.0005 5 6 4.2814 0.0159 -0.0005 6 8 5.6399 0.0246 -0.0016 7 6 6.2805 1.2964 0.1175 8 6 7.6704 1.1119 0.7298 9 6 6.4139 1.9318 -1.2679 10 6 3.5876 -1.1979 0.0005 11 6 4.3315 -2.4811 0.0000 12 6 4.2407 -3.3470 -1.0840 13 6 4.9726 -4.5506 -1.0361 14 6 4.9231 -5.4656 -2.1126 15 1 5.1358 -6.5108 -1.9432 16 6 4.5984 -5.0172 -3.3974 17 7 4.6409 -3.7389 -3.6745 18 14 4.1041 -6.2430 -4.7174 19 1 4.1339 -7.6165 -4.1535 20 1 2.7316 -5.9329 -5.1919 21 1 5.0534 -6.1543 -5.8559 22 6 5.7495 -4.8286 0.1049 23 7 5.7981 -3.9789 1.1074 24 6 5.1298 -2.8388 1.0942 25 9 5.2184 -2.0044 2.1530 26 6 2.1945 -1.1966 -0.0005 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8897 -0.5141 30 1 1.6521 2.1326 -0.0004 31 1 4.1109 2.1496 -0.0009 32 1 5.6841 1.9450 0.7589 33 1 8.2669 0.4631 0.0883 34 1 8.1594 2.0819 0.8202 35 1 7.5755 0.6591 1.7168 36 1 6.9021 2.9021 -1.1772 37 1 7.0103 1.2831 -1.9094 38 1 5.4237 2.0632 -1.7042 39 1 3.6298 -3.1022 -1.9404 40 1 4.4162 -3.4281 -4.5654 41 1 6.3116 -5.7492 0.1572 42 1 1.6532 -2.1312 -0.0050 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243091990.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:58 Heat of formation + Delta-G solvation = -60.334372 kcal Electronic energy + Delta-G solvation = -26457.065473 eV Core-core repulsion = 22701.380632 eV Total energy + Delta-G solvation = -3755.684841 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.36485 -41.35658 -40.02847 -38.80955 -35.99679 -34.76314 -33.66873 -32.45934 -32.17389 -30.13763 -28.27296 -27.41639 -27.12347 -24.87925 -23.72073 -23.59870 -21.82791 -21.45169 -19.47262 -18.90141 -18.44998 -17.77780 -17.09614 -16.88978 -16.38913 -16.32702 -16.16898 -15.51259 -15.24580 -15.01585 -14.71742 -14.54896 -14.20675 -14.08117 -13.99240 -13.76753 -13.63917 -13.55871 -13.33386 -13.11102 -13.07031 -12.86118 -12.77421 -12.58628 -12.44681 -12.35332 -12.14714 -11.86912 -11.50639 -11.48019 -11.25207 -10.40162 -10.30628 -9.78773 -9.42387 -8.81392 -8.75735 -6.49676 0.17029 0.47695 0.66383 0.86208 1.40430 1.47897 1.57066 2.16960 2.33707 2.57222 2.77429 3.30304 3.48342 3.72441 3.81721 3.89478 3.96750 4.04627 4.14324 4.24596 4.32705 4.42641 4.53930 4.63608 4.64633 4.71674 4.77366 4.80754 4.87645 4.90192 4.95082 5.03783 5.11888 5.13744 5.16945 5.21116 5.22927 5.38545 5.45396 5.62768 5.67940 5.75472 5.93345 5.95990 6.37120 6.61439 6.64520 6.66430 7.34006 8.18268 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010919 B = 0.005102 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.635171 B = 5487.012616 C = 6143.303878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.129 4.129 3 C -0.078 4.078 4 C -0.207 4.207 5 C 0.126 3.874 6 O -0.329 6.329 7 C 0.064 3.936 8 C -0.145 4.145 9 C -0.171 4.171 10 C -0.092 4.092 11 C -0.076 4.076 12 C -0.117 4.117 13 C 0.035 3.965 14 C -0.462 4.462 15 H 0.097 0.903 16 C 0.034 3.966 17 N -0.813 5.813 18 Si 0.992 3.008 19 H -0.251 1.251 20 H -0.263 1.263 21 H -0.266 1.266 22 C -0.008 4.008 23 N -0.506 5.506 24 C 0.149 3.851 25 F -0.146 7.146 26 C -0.083 4.083 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.162 0.838 31 H 0.155 0.845 32 H 0.088 0.912 33 H 0.048 0.952 34 H 0.111 0.889 35 H 0.050 0.950 36 H 0.103 0.897 37 H 0.047 0.953 38 H 0.059 0.941 39 H 0.128 0.872 40 H 0.294 0.706 41 H 0.155 0.845 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.048 12.211 0.344 13.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.129 4.129 3 C -0.096 4.096 4 C -0.226 4.226 5 C 0.080 3.920 6 O -0.243 6.243 7 C 0.009 3.991 8 C -0.202 4.202 9 C -0.228 4.228 10 C -0.093 4.093 11 C -0.079 4.079 12 C -0.143 4.143 13 C 0.030 3.970 14 C -0.490 4.490 15 H 0.115 0.885 16 C -0.183 4.183 17 N -0.437 5.437 18 Si 0.811 3.189 19 H -0.174 1.174 20 H -0.188 1.188 21 H -0.191 1.191 22 C -0.169 4.169 23 N -0.219 5.219 24 C -0.004 4.004 25 F -0.126 7.126 26 C -0.101 4.101 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.081 0.919 30 H 0.180 0.820 31 H 0.172 0.828 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.129 0.871 35 H 0.069 0.931 36 H 0.122 0.878 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.146 0.854 40 H 0.105 0.895 41 H 0.172 0.828 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.416 12.093 0.915 12.906 hybrid contribution -0.122 -0.323 -0.947 1.009 sum -4.538 11.770 -0.032 12.614 Atomic orbital electron populations 1.20733 0.88503 1.03567 1.03033 1.20067 0.97896 0.91955 1.02970 1.21219 0.92776 0.98564 0.97008 1.21434 0.95949 0.96404 1.08792 1.19186 0.82841 0.93703 0.96234 1.86244 1.16596 1.34046 1.87457 1.22760 0.94788 0.83218 0.98327 1.21867 0.94035 1.03933 1.00361 1.22326 1.02850 1.01972 0.95651 1.18240 0.93482 0.90072 1.07518 1.19144 0.99191 0.95492 0.94101 1.21676 1.00900 0.95155 0.96570 1.18823 0.90403 0.93590 0.94146 1.19911 1.40610 0.96411 0.92094 0.88514 1.26945 0.91574 0.97731 1.02071 1.69862 1.32854 1.17229 1.23760 0.84997 0.78765 0.78688 0.76402 1.17414 1.18787 1.19065 1.22553 1.03491 0.99483 0.91372 1.66226 1.21144 1.03172 1.31309 1.17727 1.05908 0.90183 0.86588 1.91355 1.95875 1.69525 1.55866 1.21035 0.91154 0.99115 0.98824 0.90360 0.89509 0.91854 0.82023 0.82774 0.89418 0.93258 0.87058 0.93106 0.87843 0.93347 0.92239 0.85408 0.89504 0.82778 0.86165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.09 10.01 71.24 0.71 -1.38 16 2 C -0.13 -3.74 5.88 -19.88 -0.12 -3.85 16 3 C -0.08 -2.02 9.68 22.29 0.22 -1.81 16 4 C -0.21 -6.22 8.28 22.34 0.19 -6.03 16 5 C 0.13 5.01 6.42 22.73 0.15 5.16 16 6 O -0.33 -13.56 9.02 -91.82 -0.83 -14.39 16 7 C 0.06 1.86 2.84 30.59 0.09 1.94 16 8 C -0.14 -3.81 9.56 71.98 0.69 -3.12 16 9 C -0.17 -4.15 9.20 71.98 0.66 -3.49 16 10 C -0.09 -4.08 5.03 -19.96 -0.10 -4.18 16 11 C -0.08 -3.91 4.95 -19.95 -0.10 -4.01 16 12 C -0.12 -6.31 8.49 23.12 0.20 -6.12 16 13 C 0.03 1.89 5.59 -21.21 -0.12 1.77 16 14 C -0.46 -23.35 9.08 23.44 0.21 -23.14 16 15 H 0.10 4.55 7.89 -2.91 -0.02 4.53 16 16 C 0.03 1.60 5.21 85.24 0.44 2.04 16 17 N -0.81 -40.59 10.85 21.82 0.24 -40.35 16 18 Si 0.99 35.31 29.59 68.60 2.03 37.34 16 19 H -0.25 -8.62 7.11 99.48 0.71 -7.91 16 20 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 21 H -0.27 -9.16 7.11 99.48 0.71 -8.45 16 22 C -0.01 -0.41 10.96 85.37 0.94 0.53 16 23 N -0.51 -27.67 10.33 -193.71 -2.00 -29.67 16 24 C 0.15 8.07 8.11 85.09 0.69 8.76 16 25 F -0.15 -7.65 16.69 44.97 0.75 -6.90 16 26 C -0.08 -3.13 9.38 22.47 0.21 -2.92 16 27 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.09 1.35 8.08 -2.39 -0.02 1.33 16 29 H 0.06 1.32 8.08 -2.39 -0.02 1.30 16 30 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 31 H 0.15 3.59 5.46 -2.91 -0.02 3.58 16 32 H 0.09 2.13 6.25 -2.39 -0.01 2.12 16 33 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.06 1.46 7.02 -2.39 -0.02 1.45 16 39 H 0.13 7.00 6.17 -2.91 -0.02 6.99 16 40 H 0.29 13.18 8.30 -92.71 -0.77 12.41 16 41 H 0.16 7.22 8.06 -2.91 -0.02 7.20 16 42 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -67.32 356.74 6.18 -61.14 By element: Atomic # 1 Polarization: 31.63 SS G_CDS: 1.04 Total: 32.67 kcal Atomic # 6 Polarization: -44.80 SS G_CDS: 4.95 Total: -39.85 kcal Atomic # 7 Polarization: -68.25 SS G_CDS: -1.77 Total: -70.02 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.83 Total: -14.39 kcal Atomic # 9 Polarization: -7.65 SS G_CDS: 0.75 Total: -6.90 kcal Atomic # 14 Polarization: 35.31 SS G_CDS: 2.03 Total: 37.34 kcal Total: -67.32 6.18 -61.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243091990.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.806 kcal (2) G-P(sol) polarization free energy of solvation -67.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds