Wall clock time and date at job start Tue Mar 31 2020 11:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38046 * 119.94655 * 2 1 4 4 C 1.38146 * 120.27305 * 180.28062 * 3 2 1 5 5 C 1.39493 * 120.16923 * 359.72055 * 4 3 2 6 6 C 1.48410 * 120.04987 * 180.02562 * 5 4 3 7 7 C 1.39332 * 120.11978 * 179.70499 * 6 5 4 8 8 C 1.38022 * 119.87475 * 179.74025 * 7 6 5 9 9 C 1.38325 * 120.11960 * 0.52726 * 8 7 6 10 10 C 1.38318 * 120.24396 * 359.72508 * 9 8 7 11 11 C 1.38022 * 120.11918 * 0.02562 * 10 9 8 12 12 C 1.39038 * 119.89974 * 359.97438 * 5 4 3 13 13 C 1.39425 * 119.73092 * 0.02562 * 12 5 4 14 14 C 1.47982 * 120.08474 * 180.02562 * 13 12 5 15 15 C 1.39884 * 119.45162 * 311.81424 * 14 13 12 16 16 C 1.36613 * 119.46957 * 179.97438 * 15 14 13 17 17 C 1.41296 * 118.41167 * 0.27549 * 16 15 14 18 18 C 1.41053 * 120.55283 * 179.70626 * 17 16 15 19 19 H 1.08005 * 120.00000 * 207.44480 * 18 17 16 20 20 C 1.40022 * 120.00191 * 27.44138 * 18 17 16 21 21 N 1.30785 * 119.99949 * 13.61325 * 20 18 17 22 22 Si 1.86805 * 119.99982 * 193.61052 * 20 18 17 23 23 H 1.48493 * 109.47153 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46936 * 120.00127 * 22 20 18 25 25 H 1.48499 * 109.47257 * 239.99890 * 22 20 18 26 26 C 1.40949 * 118.89145 * 359.45717 * 17 16 15 27 27 N 1.31263 * 120.39869 * 0.55732 * 26 17 16 28 28 H 1.09007 * 109.47085 * 265.09738 * 1 2 3 29 29 H 1.08997 * 109.47907 * 25.10381 * 1 2 3 30 30 H 1.09007 * 109.46963 * 145.10826 * 1 2 3 31 31 H 1.07996 * 119.86703 * 359.97438 * 3 2 1 32 32 H 1.07993 * 119.91803 * 179.69937 * 4 3 2 33 33 H 1.08002 * 120.06059 * 359.97438 * 7 6 5 34 34 H 1.07998 * 119.93561 * 180.27441 * 8 7 6 35 35 H 1.08003 * 119.87314 * 179.74095 * 9 8 7 36 36 H 1.07994 * 119.93977 * 179.97438 * 10 9 8 37 37 H 1.08000 * 120.05846 * 180.02562 * 11 10 9 38 38 H 1.08001 * 120.12912 * 179.97438 * 12 5 4 39 39 H 1.08004 * 120.26691 * 359.95934 * 15 14 13 40 40 H 1.07995 * 120.79349 * 180.02562 * 16 15 14 41 41 H 0.97003 * 119.99948 * 179.97438 * 21 20 18 42 42 H 1.08006 * 119.80124 * 180.26941 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1962 0.0000 4 6 3.5775 1.2040 -0.0058 5 6 4.2854 0.0021 -0.0059 6 6 5.7695 0.0136 -0.0116 7 6 6.4780 -1.1860 -0.0055 8 6 7.8581 -1.1694 -0.0163 9 6 8.5378 0.0353 -0.0221 10 6 7.8394 1.2292 -0.0229 11 6 6.4592 1.2242 -0.0174 12 6 3.5986 -1.2068 0.0005 13 6 2.2044 -1.2099 0.0064 14 6 1.4654 -2.4920 0.0137 15 6 1.8217 -3.4964 -0.8923 16 6 1.1402 -4.6804 -0.8854 17 6 0.0869 -4.8444 0.0420 18 6 -0.6508 -6.0459 0.0841 19 1 -1.6737 -6.0397 0.4308 20 6 -0.0571 -7.2467 -0.3237 21 7 1.2387 -7.3127 -0.4879 22 14 -1.1159 -8.7543 -0.6330 23 1 -2.5401 -8.4196 -0.3787 24 1 -0.9548 -9.1913 -2.0431 25 1 -0.6944 -9.8502 0.2761 26 6 -0.2108 -3.7894 0.9280 27 7 0.4737 -2.6703 0.8821 28 1 -0.3633 -0.0878 1.0240 29 1 -0.3635 0.9305 -0.4360 30 1 -0.3633 -0.8430 -0.5879 31 1 1.6531 2.1297 -0.0004 32 1 4.1108 2.1431 -0.0107 33 1 5.9483 -2.1272 0.0039 34 1 8.4083 -2.0988 -0.0160 35 1 9.6178 0.0437 -0.0263 36 1 8.3750 2.1670 -0.0271 37 1 5.9148 2.1570 -0.0185 38 1 4.1429 -2.1396 0.0000 39 1 2.6291 -3.3372 -1.5918 40 1 1.3976 -5.4705 -1.5752 41 1 1.6500 -8.1447 -0.7700 42 1 -1.0101 -3.9006 1.6459 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244046226.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:05 Heat of formation + Delta-G solvation = 60.595439 kcal Electronic energy + Delta-G solvation = -24002.584824 eV Core-core repulsion = 20682.913118 eV Total energy + Delta-G solvation = -3319.671706 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.78150 -38.73404 -37.66059 -34.33197 -33.28403 -31.74800 -30.87082 -30.75469 -29.95325 -29.11407 -26.34744 -25.40975 -23.28464 -22.53695 -21.89429 -21.74260 -20.64107 -19.68521 -17.49997 -17.38551 -16.01856 -15.57904 -15.30976 -15.11802 -14.73269 -14.44094 -14.05645 -13.95214 -13.71918 -13.36180 -13.28154 -12.90683 -12.84411 -12.70781 -12.30528 -12.03059 -11.73917 -11.56291 -11.53989 -11.41914 -11.30318 -11.21053 -11.10789 -10.71879 -10.64836 -10.36315 -9.89814 -9.56888 -9.30979 -8.94902 -8.62362 -8.34130 -8.06082 -7.72629 -7.38786 -6.97239 -4.59514 0.87844 1.40887 1.68860 2.11458 2.58184 2.91045 2.95646 3.00568 3.09235 3.75320 3.78325 4.29740 4.51685 4.75149 4.80975 4.94682 5.06208 5.25696 5.30803 5.38366 5.46249 5.49771 5.55695 5.64822 5.77632 5.96832 5.98542 6.05672 6.10693 6.24232 6.27834 6.34762 6.44029 6.48779 6.53572 6.56039 6.64683 6.72598 6.77848 6.83610 6.93488 6.98749 7.03043 7.16471 7.23649 7.34868 7.66244 7.76598 7.85348 8.31737 8.53518 8.60325 9.51658 9.93002 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.016164 B = 0.003134 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.821251 B = 8931.325098 C =10486.278104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.066 4.066 3 C -0.124 4.124 4 C -0.123 4.123 5 C -0.063 4.063 6 C -0.028 4.028 7 C -0.114 4.114 8 C -0.117 4.117 9 C -0.130 4.130 10 C -0.120 4.120 11 C -0.118 4.118 12 C -0.101 4.101 13 C 0.017 3.983 14 C 0.000 4.000 15 C -0.124 4.124 16 C -0.137 4.137 17 C 0.070 3.930 18 C -0.441 4.441 19 H 0.085 0.915 20 C 0.072 3.928 21 N -0.785 5.785 22 Si 0.915 3.085 23 H -0.258 1.258 24 H -0.270 1.270 25 H -0.272 1.272 26 C -0.018 4.018 27 N -0.444 5.444 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.098 0.902 40 H 0.126 0.874 41 H 0.285 0.715 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.252 10.742 -1.250 13.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.066 4.066 3 C -0.142 4.142 4 C -0.141 4.141 5 C -0.064 4.064 6 C -0.028 4.028 7 C -0.132 4.132 8 C -0.135 4.135 9 C -0.148 4.148 10 C -0.138 4.138 11 C -0.136 4.136 12 C -0.120 4.120 13 C 0.016 3.984 14 C -0.135 4.135 15 C -0.144 4.144 16 C -0.162 4.162 17 C 0.065 3.935 18 C -0.471 4.471 19 H 0.103 0.897 20 C -0.148 4.148 21 N -0.409 5.409 22 Si 0.739 3.261 23 H -0.181 1.181 24 H -0.195 1.195 25 H -0.197 1.197 26 C -0.182 4.182 27 N -0.152 5.152 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.116 0.884 40 H 0.143 0.857 41 H 0.096 0.904 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.246 11.233 -0.749 13.955 hybrid contribution -0.009 -1.592 -0.715 1.746 sum 8.237 9.641 -1.463 12.765 Atomic orbital electron populations 1.20660 0.91026 1.01082 1.02804 1.20111 0.96369 0.91983 0.98178 1.20806 0.93774 0.97225 1.02362 1.21022 0.93962 0.96737 1.02399 1.18553 0.90949 0.93520 1.03331 1.18886 0.92099 0.93260 0.98591 1.21361 0.94154 0.98016 0.99664 1.21100 0.94228 0.98057 1.00098 1.21148 0.99671 0.92656 1.01342 1.21040 0.94091 0.98011 1.00678 1.21222 0.94151 0.97466 1.00712 1.21304 0.93392 0.96950 1.00364 1.18461 0.91600 0.91882 0.96424 1.18704 0.99927 0.93649 1.01269 1.21263 0.99668 0.94347 0.99130 1.21310 0.98929 0.96025 0.99983 1.18602 0.91851 0.93452 0.89567 1.19645 0.99784 0.91216 1.36410 0.89652 1.26038 0.95102 1.01221 0.92400 1.69767 1.10575 1.28636 1.31934 0.86137 0.81073 0.79965 0.78940 1.18135 1.19531 1.19717 1.22492 1.02971 0.91357 1.01425 1.67074 1.04320 1.23749 1.20026 0.90762 0.93272 0.91299 0.86441 0.86531 0.85469 0.86025 0.86369 0.86220 0.85848 0.85985 0.88426 0.85656 0.90418 0.85378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.67 8.72 36.00 0.31 -1.36 16 2 C -0.07 -1.17 5.91 -104.17 -0.62 -1.79 16 3 C -0.12 -1.87 9.65 -39.69 -0.38 -2.25 16 4 C -0.12 -1.79 9.43 -39.15 -0.37 -2.16 16 5 C -0.06 -1.01 5.87 -104.94 -0.62 -1.63 16 6 C -0.03 -0.40 5.88 -104.89 -0.62 -1.02 16 7 C -0.11 -1.56 9.43 -39.25 -0.37 -1.93 16 8 C -0.12 -1.36 10.03 -39.63 -0.40 -1.76 16 9 C -0.13 -1.38 10.04 -39.52 -0.40 -1.77 16 10 C -0.12 -1.28 10.03 -39.63 -0.40 -1.68 16 11 C -0.12 -1.43 9.43 -39.25 -0.37 -1.80 16 12 C -0.10 -1.83 8.81 -38.84 -0.34 -2.17 16 13 C 0.02 0.34 5.60 -104.94 -0.59 -0.25 16 14 C 0.00 -0.01 5.44 -82.74 -0.45 -0.46 16 15 C -0.12 -2.84 9.40 -39.55 -0.37 -3.21 16 16 C -0.14 -3.40 8.71 -39.01 -0.34 -3.74 16 17 C 0.07 1.77 5.56 -106.64 -0.59 1.17 16 18 C -0.44 -10.89 9.07 -37.85 -0.34 -11.23 16 19 H 0.09 2.00 7.88 -52.48 -0.41 1.58 16 20 C 0.07 1.68 5.22 -17.33 -0.09 1.59 16 21 N -0.78 -19.03 10.94 55.55 0.61 -18.42 16 22 Si 0.92 17.42 29.58 -169.99 -5.03 12.39 16 23 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 24 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 25 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 26 C -0.02 -0.44 10.97 -16.77 -0.18 -0.63 16 27 N -0.44 -10.51 8.74 -9.10 -0.08 -10.58 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.05 0.68 8.05 -51.93 -0.42 0.26 16 30 H 0.07 1.31 6.99 -51.93 -0.36 0.95 16 31 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.12 1.36 6.19 -52.49 -0.32 1.04 16 33 H 0.13 1.73 6.20 -52.49 -0.33 1.40 16 34 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 36 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.12 1.28 6.20 -52.49 -0.33 0.95 16 38 H 0.12 2.15 6.13 -52.49 -0.32 1.83 16 39 H 0.10 2.03 7.98 -52.48 -0.42 1.61 16 40 H 0.13 3.16 6.32 -52.49 -0.33 2.83 16 41 H 0.28 6.24 8.30 -40.82 -0.34 5.90 16 42 H 0.13 2.86 8.06 -52.48 -0.42 2.44 16 LS Contribution 352.44 15.07 5.31 5.31 Total: -1.00 -27.12 352.44 -11.62 -38.74 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -4.91 Total: 10.62 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: -7.52 Total: -38.07 kcal Atomic # 7 Polarization: -29.53 SS G_CDS: 0.53 Total: -29.00 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.03 Total: 12.39 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.12 -11.62 -38.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244046226.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.336 kcal (2) G-P(sol) polarization free energy of solvation -27.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds