Wall clock time and date at job start Tue Mar 31 2020 11:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38120 * 119.93960 * 2 1 4 4 C 1.38076 * 120.24619 * 180.27339 * 3 2 1 5 5 C 1.39424 * 120.12885 * 0.02562 * 4 3 2 6 6 C 1.48406 * 120.06412 * 180.02562 * 5 4 3 7 7 C 1.39331 * 120.12303 * 179.70773 * 6 5 4 8 8 C 1.38022 * 119.87837 * 179.74540 * 7 6 5 9 9 C 1.38322 * 120.12011 * 0.51892 * 8 7 6 10 10 C 1.38318 * 120.24130 * 359.72899 * 9 8 7 11 11 C 1.38018 * 120.12269 * 0.02562 * 10 9 8 12 12 C 1.39119 * 119.87766 * 359.97438 * 5 4 3 13 13 C 1.39169 * 119.75167 * 0.02562 * 12 5 4 14 14 C 1.48375 * 120.06401 * 180.02562 * 13 12 5 15 15 C 1.38890 * 119.61074 * 311.13116 * 14 13 12 16 16 C 1.40852 * 118.76557 * 180.02562 * 15 14 13 17 17 C 1.41525 * 120.99078 * 179.97438 * 16 15 14 18 18 H 1.07995 * 119.99734 * 333.99402 * 17 16 15 19 19 C 1.40048 * 119.99866 * 153.99676 * 17 16 15 20 20 N 1.30725 * 119.99751 * 161.37972 * 19 17 16 21 21 Si 1.86800 * 120.00185 * 341.37325 * 19 17 16 22 22 H 1.48498 * 109.47167 * 95.29317 * 21 19 17 23 23 H 1.48499 * 109.47421 * 215.29641 * 21 19 17 24 24 H 1.48504 * 109.47082 * 335.29551 * 21 19 17 25 25 C 1.41149 * 118.02037 * 359.97438 * 16 15 14 26 26 C 1.37741 * 119.07458 * 0.02562 * 25 16 15 27 27 N 1.31917 * 121.15202 * 359.72254 * 26 25 16 28 28 H 1.09009 * 109.47040 * 267.56868 * 1 2 3 29 29 H 1.09003 * 109.47092 * 27.56020 * 1 2 3 30 30 H 1.08999 * 109.47681 * 147.56492 * 1 2 3 31 31 H 1.07993 * 119.87680 * 0.25713 * 3 2 1 32 32 H 1.08004 * 119.93593 * 179.97438 * 4 3 2 33 33 H 1.08002 * 120.05783 * 359.97438 * 7 6 5 34 34 H 1.08001 * 119.93726 * 180.25185 * 8 7 6 35 35 H 1.08000 * 119.87640 * 179.74714 * 9 8 7 36 36 H 1.07995 * 119.94047 * 179.97438 * 10 9 8 37 37 H 1.08004 * 120.06478 * 179.97438 * 11 10 9 38 38 H 1.08005 * 120.12329 * 180.02562 * 12 5 4 39 39 H 1.08002 * 120.61998 * 359.97209 * 15 14 13 40 40 H 0.97000 * 120.00357 * 180.02562 * 20 19 17 41 41 H 1.08005 * 120.46005 * 179.97438 * 25 16 15 42 42 H 1.07994 * 119.42251 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.1969 0.0000 4 6 3.5771 1.2043 -0.0057 5 6 4.2834 0.0022 -0.0120 6 6 5.7674 0.0118 -0.0176 7 6 6.4744 -1.1888 -0.0177 8 6 7.8545 -1.1740 -0.0282 9 6 8.5358 0.0299 -0.0277 10 6 7.8389 1.2247 -0.0223 11 6 6.4587 1.2215 -0.0169 12 6 3.5944 -1.2064 -0.0120 13 6 2.2027 -1.2080 -0.0063 14 6 1.4608 -2.4930 -0.0057 15 6 1.8018 -3.4827 -0.9186 16 6 1.0855 -4.6954 -0.9026 17 6 1.3931 -5.7353 -1.8119 18 1 1.8502 -5.5038 -2.7626 19 6 1.1045 -7.0647 -1.4789 20 7 1.0392 -7.9738 -2.4160 21 14 0.8132 -7.5388 0.3043 22 1 -0.6446 -7.5302 0.5869 23 1 1.3571 -8.8985 0.5502 24 1 1.4956 -6.5645 1.1933 25 6 0.0518 -4.8425 0.0472 26 6 -0.2144 -3.8048 0.9129 27 7 0.4819 -2.6852 0.8708 28 1 -0.3633 -0.0436 1.0268 29 1 -0.3633 0.9111 -0.4755 30 1 -0.3634 -0.8673 -0.5512 31 1 1.6534 2.1304 0.0042 32 1 4.1111 2.1431 -0.0061 33 1 5.9435 -2.1293 -0.0134 34 1 8.4035 -2.1040 -0.0325 35 1 9.6157 0.0369 -0.0318 36 1 8.3757 2.1617 -0.0215 37 1 5.9156 2.1550 -0.0123 38 1 4.1375 -2.1400 -0.0165 39 1 2.6008 -3.3251 -1.6280 40 1 0.8390 -8.8945 -2.1855 41 1 -0.5229 -5.7558 0.0938 42 1 -1.0038 -3.9115 1.6421 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244060236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:14 Heat of formation + Delta-G solvation = 64.212975 kcal Electronic energy + Delta-G solvation = -24204.491396 eV Core-core repulsion = 20884.976557 eV Total energy + Delta-G solvation = -3319.514838 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.93112 -38.89548 -37.83418 -34.25027 -33.43812 -32.02611 -31.39455 -30.93613 -30.11290 -28.71750 -26.29534 -25.88465 -23.80662 -22.60644 -22.26235 -21.39381 -20.91860 -19.82866 -17.84011 -17.15993 -16.04195 -15.63116 -15.51577 -15.20726 -14.80299 -14.51573 -14.25249 -14.16066 -13.84251 -13.46378 -13.41223 -13.03452 -12.98000 -12.90777 -12.73194 -12.53602 -11.94848 -11.67442 -11.56924 -11.37546 -11.32266 -11.05260 -10.94629 -10.76898 -10.71291 -10.46575 -9.85115 -9.48244 -9.42386 -8.98959 -8.82675 -8.33882 -8.15171 -7.87953 -7.53443 -7.15283 -4.78897 0.78890 1.36846 1.49803 1.99473 2.45587 2.58138 3.00663 3.11678 3.21168 3.70013 3.83265 4.18941 4.44934 4.64799 4.73055 4.90745 4.99263 5.04617 5.14391 5.25833 5.35236 5.37272 5.41010 5.50258 5.65764 5.76243 5.89449 5.94584 5.99289 6.09578 6.14288 6.21145 6.34098 6.36003 6.39509 6.45057 6.47903 6.52113 6.58152 6.66562 6.77494 6.89495 6.94696 6.96614 7.06319 7.18055 7.23079 7.56742 7.84759 8.13342 8.37137 8.57263 9.27223 9.85592 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.013277 B = 0.003754 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.331707 B = 7456.866717 C = 9051.481684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.052 4.052 3 C -0.126 4.126 4 C -0.111 4.111 5 C -0.064 4.064 6 C -0.031 4.031 7 C -0.113 4.113 8 C -0.116 4.116 9 C -0.128 4.128 10 C -0.120 4.120 11 C -0.117 4.117 12 C -0.088 4.088 13 C -0.013 4.013 14 C 0.163 3.837 15 C -0.238 4.238 16 C 0.109 3.891 17 C -0.435 4.435 18 H 0.094 0.906 19 C 0.086 3.914 20 N -0.793 5.793 21 Si 0.917 3.083 22 H -0.268 1.268 23 H -0.289 1.289 24 H -0.245 1.245 25 C -0.291 4.291 26 C 0.119 3.881 27 N -0.560 5.560 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.109 0.891 40 H 0.289 0.711 41 H 0.107 0.893 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.979 13.542 4.432 16.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.053 4.053 3 C -0.144 4.144 4 C -0.129 4.129 5 C -0.064 4.064 6 C -0.031 4.031 7 C -0.131 4.131 8 C -0.134 4.134 9 C -0.146 4.146 10 C -0.138 4.138 11 C -0.135 4.135 12 C -0.106 4.106 13 C -0.014 4.014 14 C 0.031 3.969 15 C -0.261 4.261 16 C 0.101 3.899 17 C -0.464 4.464 18 H 0.112 0.888 19 C -0.136 4.136 20 N -0.416 5.416 21 Si 0.743 3.257 22 H -0.194 1.194 23 H -0.217 1.217 24 H -0.168 1.168 25 C -0.313 4.313 26 C -0.035 4.035 27 N -0.275 5.275 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.127 0.873 40 H 0.100 0.900 41 H 0.124 0.876 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.758 13.956 4.882 16.697 hybrid contribution 0.056 -1.254 -0.028 1.256 sum 7.814 12.701 4.854 15.683 Atomic orbital electron populations 1.20713 0.90773 1.01588 1.02827 1.20052 0.96509 0.91826 0.96903 1.20834 0.93804 0.97295 1.02501 1.21089 0.94000 0.96934 1.00860 1.18569 0.91192 0.93374 1.03304 1.18839 0.91867 0.93355 0.99032 1.21367 0.94222 0.97972 0.99502 1.21112 0.94209 0.98127 0.99971 1.21165 0.99737 0.92640 1.01068 1.21044 0.94081 0.98048 1.00646 1.21213 0.94182 0.97403 1.00665 1.21286 0.93109 0.97389 0.98842 1.18547 0.92045 0.91896 0.98934 1.19129 0.93226 0.91371 0.93162 1.21831 1.04047 0.95992 1.04181 1.17837 0.89141 0.92651 0.90267 1.19549 1.34066 0.89761 1.03066 0.88778 1.26228 0.90631 0.96358 1.00335 1.69639 1.32433 1.04010 1.35542 0.86238 0.79515 0.77495 0.82423 1.19369 1.21682 1.16797 1.21916 1.03753 1.00979 1.04681 1.21891 0.96353 0.89224 0.96055 1.67511 1.10025 1.24408 1.25514 0.90588 0.92925 0.91128 0.86079 0.86192 0.85397 0.85926 0.86302 0.86163 0.85838 0.85505 0.87323 0.90012 0.87554 0.85549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.61 8.83 36.01 0.32 -1.29 16 2 C -0.05 -0.87 5.91 -104.23 -0.62 -1.49 16 3 C -0.13 -1.77 9.66 -39.68 -0.38 -2.15 16 4 C -0.11 -1.50 9.42 -39.20 -0.37 -1.87 16 5 C -0.06 -0.97 5.87 -104.94 -0.62 -1.58 16 6 C -0.03 -0.42 5.88 -104.89 -0.62 -1.04 16 7 C -0.11 -1.48 9.43 -39.25 -0.37 -1.85 16 8 C -0.12 -1.31 10.03 -39.63 -0.40 -1.71 16 9 C -0.13 -1.31 10.04 -39.52 -0.40 -1.70 16 10 C -0.12 -1.22 10.03 -39.63 -0.40 -1.62 16 11 C -0.12 -1.35 9.43 -39.25 -0.37 -1.72 16 12 C -0.09 -1.50 8.83 -38.91 -0.34 -1.85 16 13 C -0.01 -0.25 5.59 -104.95 -0.59 -0.84 16 14 C 0.16 3.53 5.37 -83.04 -0.45 3.08 16 15 C -0.24 -5.50 9.28 -38.35 -0.36 -5.85 16 16 C 0.11 2.70 5.21 -106.55 -0.56 2.15 16 17 C -0.43 -11.34 9.64 -37.65 -0.36 -11.71 16 18 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 19 C 0.09 2.17 5.44 -17.34 -0.09 2.07 16 20 N -0.79 -20.20 13.92 55.55 0.77 -19.43 16 21 Si 0.92 20.07 24.46 -169.99 -4.16 15.91 16 22 H -0.27 -5.64 6.67 56.52 0.38 -5.26 16 23 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.24 -5.57 6.77 56.52 0.38 -5.19 16 25 C -0.29 -6.83 7.26 -38.66 -0.28 -7.11 16 26 C 0.12 2.59 11.15 -17.70 -0.20 2.39 16 27 N -0.56 -12.32 8.74 -9.94 -0.09 -12.40 16 28 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16 29 H 0.05 0.68 8.07 -51.93 -0.42 0.26 16 30 H 0.07 1.27 6.81 -51.93 -0.35 0.92 16 31 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 32 H 0.12 1.27 6.19 -52.48 -0.33 0.95 16 33 H 0.13 1.67 6.20 -52.49 -0.33 1.34 16 34 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 37 H 0.12 1.19 6.20 -52.48 -0.33 0.86 16 38 H 0.13 2.12 6.15 -52.48 -0.32 1.80 16 39 H 0.11 2.39 8.01 -52.49 -0.42 1.97 16 40 H 0.29 6.63 8.29 -40.82 -0.34 6.29 16 41 H 0.11 2.45 4.35 -52.48 -0.23 2.22 16 42 H 0.13 2.35 8.06 -52.49 -0.42 1.92 16 LS Contribution 346.74 15.07 5.23 5.23 Total: -1.00 -27.89 346.74 -10.54 -38.43 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -4.86 Total: 7.95 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: -7.44 Total: -35.68 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: 0.69 Total: -31.83 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.16 Total: 15.91 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.89 -10.54 -38.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244060236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.644 kcal (2) G-P(sol) polarization free energy of solvation -27.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds