Wall clock time and date at job start Tue Mar 31 2020 11:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38120 * 119.93960 * 2 1 4 4 C 1.38076 * 120.24619 * 180.27339 * 3 2 1 5 5 C 1.39424 * 120.12885 * 0.02562 * 4 3 2 6 6 C 1.48406 * 120.06412 * 180.02562 * 5 4 3 7 7 C 1.39331 * 120.12303 * 179.70773 * 6 5 4 8 8 C 1.38022 * 119.87837 * 179.74540 * 7 6 5 9 9 C 1.38322 * 120.12011 * 0.51892 * 8 7 6 10 10 C 1.38318 * 120.24130 * 359.72899 * 9 8 7 11 11 C 1.38018 * 120.12269 * 0.02562 * 10 9 8 12 12 C 1.39119 * 119.87766 * 359.97438 * 5 4 3 13 13 C 1.39169 * 119.75167 * 0.02562 * 12 5 4 14 14 C 1.48375 * 120.06401 * 180.02562 * 13 12 5 15 15 C 1.38890 * 119.61074 * 311.13116 * 14 13 12 16 16 C 1.40852 * 118.76557 * 180.02562 * 15 14 13 17 17 C 1.41525 * 120.99078 * 179.97438 * 16 15 14 18 18 H 1.07995 * 119.99734 * 333.99402 * 17 16 15 19 19 C 1.40048 * 119.99866 * 153.99676 * 17 16 15 20 20 N 1.30725 * 119.99751 * 161.37972 * 19 17 16 21 21 Si 1.86800 * 120.00185 * 341.37325 * 19 17 16 22 22 H 1.48498 * 109.47167 * 95.29317 * 21 19 17 23 23 H 1.48499 * 109.47421 * 215.29641 * 21 19 17 24 24 H 1.48504 * 109.47082 * 335.29551 * 21 19 17 25 25 C 1.41149 * 118.02037 * 359.97438 * 16 15 14 26 26 C 1.37741 * 119.07458 * 0.02562 * 25 16 15 27 27 N 1.31917 * 121.15202 * 359.72254 * 26 25 16 28 28 H 1.09009 * 109.47040 * 267.56868 * 1 2 3 29 29 H 1.09003 * 109.47092 * 27.56020 * 1 2 3 30 30 H 1.08999 * 109.47681 * 147.56492 * 1 2 3 31 31 H 1.07993 * 119.87680 * 0.25713 * 3 2 1 32 32 H 1.08004 * 119.93593 * 179.97438 * 4 3 2 33 33 H 1.08002 * 120.05783 * 359.97438 * 7 6 5 34 34 H 1.08001 * 119.93726 * 180.25185 * 8 7 6 35 35 H 1.08000 * 119.87640 * 179.74714 * 9 8 7 36 36 H 1.07995 * 119.94047 * 179.97438 * 10 9 8 37 37 H 1.08004 * 120.06478 * 179.97438 * 11 10 9 38 38 H 1.08005 * 120.12329 * 180.02562 * 12 5 4 39 39 H 1.08002 * 120.61998 * 359.97209 * 15 14 13 40 40 H 0.97000 * 120.00357 * 180.02562 * 20 19 17 41 41 H 1.08005 * 120.46005 * 179.97438 * 25 16 15 42 42 H 1.07994 * 119.42251 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.1969 0.0000 4 6 3.5771 1.2043 -0.0057 5 6 4.2834 0.0022 -0.0120 6 6 5.7674 0.0118 -0.0176 7 6 6.4744 -1.1888 -0.0177 8 6 7.8545 -1.1740 -0.0282 9 6 8.5358 0.0299 -0.0277 10 6 7.8389 1.2247 -0.0223 11 6 6.4587 1.2215 -0.0169 12 6 3.5944 -1.2064 -0.0120 13 6 2.2027 -1.2080 -0.0063 14 6 1.4608 -2.4930 -0.0057 15 6 1.8018 -3.4827 -0.9186 16 6 1.0855 -4.6954 -0.9026 17 6 1.3931 -5.7353 -1.8119 18 1 1.8502 -5.5038 -2.7626 19 6 1.1045 -7.0647 -1.4789 20 7 1.0392 -7.9738 -2.4160 21 14 0.8132 -7.5388 0.3043 22 1 -0.6446 -7.5302 0.5869 23 1 1.3571 -8.8985 0.5502 24 1 1.4956 -6.5645 1.1933 25 6 0.0518 -4.8425 0.0472 26 6 -0.2144 -3.8048 0.9129 27 7 0.4819 -2.6852 0.8708 28 1 -0.3633 -0.0436 1.0268 29 1 -0.3633 0.9111 -0.4755 30 1 -0.3634 -0.8673 -0.5512 31 1 1.6534 2.1304 0.0042 32 1 4.1111 2.1431 -0.0061 33 1 5.9435 -2.1293 -0.0134 34 1 8.4035 -2.1040 -0.0325 35 1 9.6157 0.0369 -0.0318 36 1 8.3757 2.1617 -0.0215 37 1 5.9156 2.1550 -0.0123 38 1 4.1375 -2.1400 -0.0165 39 1 2.6008 -3.3251 -1.6280 40 1 0.8390 -8.8945 -2.1855 41 1 -0.5229 -5.7558 0.0938 42 1 -1.0038 -3.9115 1.6421 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244060236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:13 Heat of formation + Delta-G solvation = 52.312542 kcal Electronic energy + Delta-G solvation = -24205.007437 eV Core-core repulsion = 20884.976557 eV Total energy + Delta-G solvation = -3320.030880 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.18069 -40.26137 -39.10353 -36.07549 -34.65463 -33.42711 -33.20185 -31.89264 -31.15393 -30.20822 -27.92525 -27.32039 -25.13139 -23.67195 -23.55145 -23.06100 -22.11811 -21.16907 -19.45451 -18.34232 -17.73532 -16.98529 -16.79779 -16.32546 -16.26052 -16.18817 -15.72174 -15.27052 -15.01013 -14.79628 -14.66286 -14.58507 -14.26109 -14.08315 -13.97554 -13.90755 -13.47614 -13.11397 -12.86546 -12.82041 -12.76758 -12.50565 -12.35653 -12.22560 -11.92662 -11.71265 -11.57130 -11.29201 -10.53170 -10.25471 -10.15395 -9.92639 -9.85384 -9.33128 -9.06189 -8.79207 -6.77948 -0.26149 0.11549 0.50279 0.66595 0.79197 1.04166 1.21402 1.36519 1.43344 2.03672 2.51451 2.70028 3.13088 3.35432 3.50381 3.67967 3.86406 3.98937 4.07812 4.13937 4.16506 4.26476 4.35061 4.43090 4.46275 4.56894 4.61618 4.67615 4.69285 4.79324 4.87680 4.89358 4.93688 5.05138 5.08952 5.18034 5.24165 5.25924 5.34123 5.35619 5.41670 5.59784 5.61582 5.64339 5.76885 5.79757 5.95852 6.06690 6.11575 6.18282 6.46712 6.60499 7.47444 8.00827 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.013277 B = 0.003754 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.331707 B = 7456.866717 C = 9051.481684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.067 4.067 3 C -0.117 4.117 4 C -0.101 4.101 5 C -0.064 4.064 6 C -0.057 4.057 7 C -0.136 4.136 8 C -0.127 4.127 9 C -0.124 4.124 10 C -0.119 4.119 11 C -0.117 4.117 12 C -0.105 4.105 13 C -0.050 4.050 14 C 0.173 3.827 15 C -0.260 4.260 16 C 0.098 3.902 17 C -0.472 4.472 18 H 0.061 0.939 19 C 0.055 3.945 20 N -0.827 5.827 21 Si 0.970 3.030 22 H -0.248 1.248 23 H -0.272 1.272 24 H -0.261 1.261 25 C -0.304 4.304 26 C 0.120 3.880 27 N -0.557 5.557 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.038 0.962 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.111 0.889 34 H 0.135 0.865 35 H 0.148 0.852 36 H 0.154 0.846 37 H 0.147 0.853 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.301 0.699 41 H 0.113 0.887 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.775 16.930 6.291 20.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.068 4.068 3 C -0.134 4.134 4 C -0.119 4.119 5 C -0.064 4.064 6 C -0.057 4.057 7 C -0.154 4.154 8 C -0.145 4.145 9 C -0.142 4.142 10 C -0.137 4.137 11 C -0.134 4.134 12 C -0.124 4.124 13 C -0.050 4.050 14 C 0.041 3.959 15 C -0.283 4.283 16 C 0.090 3.910 17 C -0.502 4.502 18 H 0.079 0.921 19 C -0.164 4.164 20 N -0.452 5.452 21 Si 0.793 3.207 22 H -0.173 1.173 23 H -0.199 1.199 24 H -0.185 1.185 25 C -0.326 4.326 26 C -0.034 4.034 27 N -0.271 5.271 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.057 0.943 31 H 0.177 0.823 32 H 0.176 0.824 33 H 0.129 0.871 34 H 0.153 0.847 35 H 0.166 0.834 36 H 0.172 0.828 37 H 0.165 0.835 38 H 0.130 0.870 39 H 0.121 0.879 40 H 0.112 0.888 41 H 0.131 0.869 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 8.550 17.333 6.724 20.463 hybrid contribution -0.029 -2.080 -0.607 2.168 sum 8.521 15.252 6.117 18.511 Atomic orbital electron populations 1.20659 0.90288 1.01753 1.02580 1.20258 0.97059 0.92007 0.97477 1.21221 0.94168 0.97536 1.00492 1.21543 0.94073 0.97677 0.98568 1.18812 0.92296 0.93107 1.02189 1.18921 0.91166 0.94462 1.01178 1.21434 0.95369 0.97657 1.00985 1.21352 0.93519 0.99671 0.99963 1.21572 1.01303 0.92098 0.99236 1.21472 0.93732 0.99391 0.99075 1.21508 0.95040 0.97201 0.99695 1.21269 0.92717 0.98211 1.00219 1.18568 0.92647 0.91466 1.02363 1.19556 0.92505 0.92230 0.91597 1.21933 1.04551 0.96594 1.05173 1.18008 0.89700 0.92762 0.90550 1.19519 1.36488 0.91391 1.02781 0.92081 1.26867 0.90100 0.95691 1.03707 1.69644 1.33593 1.04812 1.37124 0.85443 0.80323 0.77384 0.77584 1.17295 1.19878 1.18533 1.22060 1.03632 1.02018 1.04919 1.22490 0.96649 0.88336 0.95957 1.67668 1.09896 1.24397 1.25152 0.90670 0.89722 0.94255 0.82281 0.82357 0.87113 0.84674 0.83444 0.82845 0.83511 0.86959 0.87870 0.88844 0.86928 0.81730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.89 8.83 71.24 0.63 -2.27 16 2 C -0.07 -2.18 5.91 -19.61 -0.12 -2.29 16 3 C -0.12 -2.88 9.66 22.20 0.21 -2.67 16 4 C -0.10 -2.40 9.42 22.52 0.21 -2.19 16 5 C -0.06 -1.88 5.87 -20.07 -0.12 -2.00 16 6 C -0.06 -1.51 5.88 -20.04 -0.12 -1.62 16 7 C -0.14 -3.69 9.43 22.48 0.21 -3.48 16 8 C -0.13 -2.78 10.03 22.24 0.22 -2.55 16 9 C -0.12 -2.18 10.04 22.31 0.22 -1.95 16 10 C -0.12 -1.97 10.03 22.24 0.22 -1.74 16 11 C -0.12 -2.32 9.43 22.48 0.21 -2.11 16 12 C -0.11 -3.77 8.83 22.71 0.20 -3.57 16 13 C -0.05 -1.92 5.59 -20.07 -0.11 -2.03 16 14 C 0.17 7.80 5.37 41.86 0.22 8.03 16 15 C -0.26 -12.87 9.28 23.07 0.21 -12.66 16 16 C 0.10 5.11 5.21 -21.11 -0.11 5.00 16 17 C -0.47 -26.43 9.64 23.52 0.23 -26.20 16 18 H 0.06 3.68 8.06 -2.91 -0.02 3.65 16 19 C 0.05 2.87 5.44 85.30 0.46 3.34 16 20 N -0.83 -43.83 13.92 21.84 0.30 -43.52 16 21 Si 0.97 41.83 24.46 68.60 1.68 43.51 16 22 H -0.25 -9.87 6.67 99.48 0.66 -9.20 16 23 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 24 H -0.26 -11.87 6.77 99.48 0.67 -11.20 16 25 C -0.30 -14.49 7.26 22.87 0.17 -14.32 16 26 C 0.12 5.16 11.15 84.56 0.94 6.11 16 27 N -0.56 -24.62 8.74 -185.37 -1.62 -26.24 16 28 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 29 H 0.08 1.94 8.07 -2.39 -0.02 1.92 16 30 H 0.04 1.41 6.81 -2.39 -0.02 1.39 16 31 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 32 H 0.16 2.52 6.19 -2.91 -0.02 2.51 16 33 H 0.11 3.23 6.20 -2.91 -0.02 3.22 16 34 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 35 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 36 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.15 2.11 6.20 -2.91 -0.02 2.10 16 38 H 0.11 4.18 6.15 -2.91 -0.02 4.16 16 39 H 0.10 5.04 8.01 -2.91 -0.02 5.02 16 40 H 0.30 14.11 8.29 -92.71 -0.77 13.34 16 41 H 0.11 5.16 4.35 -2.91 -0.01 5.14 16 42 H 0.17 5.72 8.06 -2.91 -0.02 5.70 16 Total: -1.00 -64.69 346.74 5.35 -59.35 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.97 Total: 28.08 kcal Atomic # 6 Polarization: -65.20 SS G_CDS: 4.02 Total: -61.18 kcal Atomic # 7 Polarization: -68.44 SS G_CDS: -1.32 Total: -69.76 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.68 Total: 43.51 kcal Total: -64.69 5.35 -59.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244060236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.659 kcal (2) G-P(sol) polarization free energy of solvation -64.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds