Wall clock time and date at job start Tue Mar 31 2020 11:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38350 * 119.86665 * 2 1 4 4 C 1.37981 * 120.12989 * 180.02562 * 3 2 1 5 5 C 1.39452 * 119.86751 * 359.97438 * 4 3 2 6 6 C 1.48223 * 120.12870 * 180.02562 * 5 4 3 7 7 C 1.39595 * 119.96755 * 179.97438 * 6 5 4 8 8 C 1.37104 * 120.03132 * 180.02562 * 7 6 5 9 9 C 1.39853 * 119.96784 * 359.97438 * 8 7 6 10 10 C 1.47653 * 120.03167 * 180.02562 * 9 8 7 11 11 C 1.39776 * 120.65786 * 309.98059 * 10 9 8 12 12 C 1.38328 * 118.47356 * 180.02562 * 11 10 9 13 13 C 1.39090 * 119.73805 * 359.97438 * 12 11 10 14 14 N 1.31261 * 121.35780 * 359.74574 * 13 12 11 15 15 C 1.33717 * 121.64112 * 0.52483 * 14 13 12 16 16 C 1.40745 * 119.94847 * 179.75712 * 15 14 13 17 17 H 1.08002 * 120.00336 * 179.72913 * 16 15 14 18 18 C 1.40145 * 119.99749 * 359.44464 * 16 15 14 19 19 N 1.30694 * 120.00245 * 0.28145 * 18 16 15 20 20 Si 1.86803 * 119.99830 * 180.27948 * 18 16 15 21 21 H 1.48496 * 109.47187 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47428 * 120.00302 * 20 18 16 23 23 H 1.48506 * 109.46902 * 240.00378 * 20 18 16 24 24 C 1.39855 * 119.93786 * 0.27218 * 9 8 7 25 25 C 1.37102 * 119.96967 * 359.49121 * 24 9 8 26 26 C 1.39446 * 119.74149 * 0.27570 * 5 4 3 27 27 C 1.37991 * 119.86189 * 359.47618 * 26 5 4 28 28 H 1.08996 * 109.47447 * 89.99891 * 1 2 3 29 29 H 1.09003 * 109.46718 * 209.99379 * 1 2 3 30 30 H 1.08997 * 109.46864 * 329.99524 * 1 2 3 31 31 H 1.07996 * 119.93589 * 359.97438 * 3 2 1 32 32 H 1.08001 * 120.06707 * 179.97438 * 4 3 2 33 33 H 1.08003 * 119.98136 * 0.02562 * 7 6 5 34 34 H 1.07996 * 120.01493 * 180.02562 * 8 7 6 35 35 H 1.08005 * 120.76364 * 0.03761 * 11 10 9 36 36 H 1.07998 * 120.13262 * 179.97438 * 12 11 10 37 37 H 1.08004 * 119.32162 * 179.97438 * 13 12 11 38 38 H 0.97005 * 120.00041 * 179.97438 * 19 18 16 39 39 H 1.08004 * 120.01187 * 179.70070 * 24 9 8 40 40 H 1.08001 * 119.98804 * 180.25085 * 25 24 9 41 41 H 1.08000 * 120.07263 * 179.70044 * 26 5 4 42 42 H 1.08004 * 119.93193 * 180.25221 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1998 0.0000 4 6 3.5758 1.2061 -0.0005 5 6 4.2758 0.0000 -0.0005 6 6 5.7580 0.0001 -0.0005 7 6 6.4554 -1.2092 0.0000 8 6 7.8264 -1.2107 0.0005 9 6 8.5263 0.0001 0.0000 10 6 10.0028 0.0001 0.0000 11 6 10.7156 -0.7720 0.9217 12 6 12.0979 -0.7377 0.8816 13 6 12.7412 0.0542 -0.0636 14 7 12.0634 0.7719 -0.9288 15 6 10.7263 0.7837 -0.9358 16 6 10.0355 1.5704 -1.8764 17 1 8.9556 1.5771 -1.8857 18 6 10.7490 2.3495 -2.7972 19 7 12.0559 2.3414 -2.7860 20 14 9.8321 3.3997 -4.0405 21 1 8.3694 3.2331 -3.8463 22 1 10.1981 4.8262 -3.8494 23 1 10.2000 2.9742 -5.4149 24 6 7.8263 1.2109 0.0047 25 6 6.4553 1.2094 -0.0008 26 6 3.5759 -1.2061 -0.0058 27 6 2.1960 -1.1997 -0.0001 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6528 2.1332 -0.0004 32 1 4.1126 2.1433 -0.0010 33 1 5.9146 -2.1441 0.0000 34 1 8.3656 -2.1464 0.0005 35 1 10.1990 -1.3816 1.6483 36 1 12.6752 -1.3234 1.5815 37 1 13.8208 0.0763 -0.0886 38 1 12.5498 2.8805 -3.4236 39 1 8.3656 2.1466 0.0091 40 1 5.9145 2.1442 -0.0013 41 1 4.1126 -2.1432 -0.0107 42 1 1.6528 -2.1332 0.0000 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244296249.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:33 Heat of formation + Delta-G solvation = 70.527807 kcal Electronic energy + Delta-G solvation = -24028.543913 eV Core-core repulsion = 20709.302907 eV Total energy + Delta-G solvation = -3319.241007 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.71499 -38.68144 -37.49700 -33.79733 -33.66124 -31.45340 -31.32934 -30.52226 -30.04158 -28.73180 -26.38248 -25.50397 -23.30782 -22.82865 -21.69901 -21.02751 -20.80185 -19.87238 -17.61883 -17.05392 -15.89406 -15.51988 -15.28708 -15.16656 -14.42449 -14.32552 -13.98922 -13.89097 -13.73510 -13.64609 -13.33630 -12.78252 -12.70579 -12.67589 -12.34675 -12.14310 -12.13009 -11.67304 -11.52693 -11.29544 -11.17589 -11.12370 -10.97461 -10.80697 -10.38510 -10.21922 -9.94363 -9.50414 -9.17500 -8.92429 -8.39392 -8.31830 -7.88246 -7.67883 -7.13167 -6.53292 -4.61404 0.91292 1.44526 2.04264 2.09591 2.69396 2.97049 3.03403 3.08463 3.14984 3.83358 3.85873 4.53084 4.64669 4.76540 4.77783 4.93281 5.02653 5.16743 5.37145 5.42856 5.46739 5.50216 5.63000 5.66591 5.74527 5.79744 5.98198 6.02742 6.04980 6.11095 6.14924 6.17664 6.34616 6.45373 6.56544 6.58231 6.63333 6.65402 6.78704 6.89567 7.01552 7.08287 7.12897 7.22722 7.29296 7.46775 7.62602 7.70627 7.94801 8.15061 8.52256 8.81495 9.98187 10.16721 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.015161 B = 0.003443 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.456330 B = 8131.401834 C = 9644.955454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.103 4.103 3 C -0.117 4.117 4 C -0.116 4.116 5 C -0.025 4.025 6 C -0.089 4.089 7 C -0.104 4.104 8 C -0.132 4.132 9 C 0.039 3.961 10 C -0.243 4.243 11 C -0.031 4.031 12 C -0.322 4.322 13 C 0.134 3.866 14 N -0.482 5.482 15 C 0.268 3.732 16 C -0.418 4.418 17 H 0.095 0.905 18 C 0.068 3.932 19 N -0.706 5.706 20 Si 0.903 3.097 21 H -0.257 1.257 22 H -0.271 1.271 23 H -0.271 1.271 24 C -0.111 4.111 25 C -0.105 4.105 26 C -0.117 4.117 27 C -0.118 4.118 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.119 0.881 32 H 0.125 0.875 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.119 0.881 38 H 0.275 0.725 39 H 0.129 0.871 40 H 0.116 0.884 41 H 0.124 0.876 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.505 -2.690 3.573 16.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.103 4.103 3 C -0.135 4.135 4 C -0.134 4.134 5 C -0.025 4.025 6 C -0.089 4.089 7 C -0.122 4.122 8 C -0.151 4.151 9 C 0.038 3.962 10 C -0.248 4.248 11 C -0.055 4.055 12 C -0.345 4.345 13 C -0.035 4.035 14 N -0.193 5.193 15 C 0.145 3.855 16 C -0.448 4.448 17 H 0.113 0.887 18 C -0.159 4.159 19 N -0.326 5.326 20 Si 0.726 3.274 21 H -0.180 1.180 22 H -0.196 1.196 23 H -0.196 1.196 24 C -0.129 4.129 25 C -0.123 4.123 26 C -0.135 4.135 27 C -0.136 4.136 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.137 0.863 32 H 0.143 0.857 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.137 0.863 38 H 0.086 0.914 39 H 0.147 0.853 40 H 0.134 0.866 41 H 0.142 0.858 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.911 -2.053 2.805 15.311 hybrid contribution -0.593 -0.159 0.070 0.618 sum -15.505 -2.212 2.875 15.923 Atomic orbital electron populations 1.20756 0.91544 1.02446 1.02040 1.19905 0.95822 0.93285 1.01291 1.20923 0.94046 0.97351 1.01180 1.21273 0.93934 0.97794 1.00382 1.18907 0.92313 0.93072 0.98175 1.18613 0.90726 0.93718 1.05872 1.20835 0.94095 0.96602 1.00679 1.21072 0.93435 0.97759 1.02798 1.18851 0.92801 0.91994 0.92522 1.19373 0.90831 1.09473 1.05104 1.20899 0.93813 0.95075 0.95715 1.21224 0.94562 1.11293 1.07389 1.22629 0.98848 0.91509 0.90554 1.68772 1.07439 1.20882 1.22183 1.18534 0.87885 0.89118 0.90009 1.19882 0.95106 1.19246 1.10528 0.88664 1.26164 0.94860 0.96854 0.98025 1.70123 1.06992 1.27641 1.27867 0.86322 0.81180 0.79679 0.80195 1.17993 1.19593 1.19614 1.21233 0.93135 0.98705 0.99789 1.20930 0.94278 0.96651 1.00478 1.21243 0.93916 0.97690 1.00635 1.20913 0.94032 0.97323 1.01295 0.91459 0.91808 0.91790 0.86284 0.85701 0.86769 0.86580 0.88508 0.88644 0.86329 0.91399 0.85268 0.86607 0.85824 0.86327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.01 36.01 0.36 -0.52 16 2 C -0.10 -1.13 5.89 -104.54 -0.62 -1.74 16 3 C -0.12 -1.35 9.68 -39.63 -0.38 -1.73 16 4 C -0.12 -1.53 9.43 -39.22 -0.37 -1.90 16 5 C -0.02 -0.36 5.88 -104.89 -0.62 -0.98 16 6 C -0.09 -1.47 5.88 -104.78 -0.62 -2.08 16 7 C -0.10 -1.71 9.39 -39.49 -0.37 -2.08 16 8 C -0.13 -2.44 9.51 -39.39 -0.37 -2.82 16 9 C 0.04 0.82 5.03 -104.84 -0.53 0.29 16 10 C -0.24 -5.74 5.53 -104.08 -0.58 -6.31 16 11 C -0.03 -0.68 9.66 -38.97 -0.38 -1.05 16 12 C -0.32 -7.03 10.10 -39.23 -0.40 -7.43 16 13 C 0.13 3.16 11.17 -17.48 -0.20 2.96 16 14 N -0.48 -12.92 7.85 -10.90 -0.09 -13.01 16 15 C 0.27 7.05 6.56 -84.70 -0.56 6.50 16 16 C -0.42 -10.73 7.96 -37.92 -0.30 -11.03 16 17 H 0.10 2.33 5.25 -52.49 -0.28 2.06 16 18 C 0.07 1.67 5.50 -17.32 -0.10 1.58 16 19 N -0.71 -18.22 11.46 55.56 0.64 -17.58 16 20 Si 0.90 18.19 29.56 -169.99 -5.02 13.16 16 21 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 22 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 23 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 24 C -0.11 -2.18 7.52 -39.39 -0.30 -2.47 16 25 C -0.11 -1.81 9.39 -39.49 -0.37 -2.18 16 26 C -0.12 -1.51 9.43 -39.22 -0.37 -1.88 16 27 C -0.12 -1.33 9.68 -39.63 -0.38 -1.71 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 30 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.13 1.51 6.19 -52.49 -0.33 1.19 16 33 H 0.11 1.55 6.19 -52.48 -0.32 1.23 16 34 H 0.12 2.02 8.05 -52.49 -0.42 1.59 16 35 H 0.10 1.87 8.06 -52.48 -0.42 1.45 16 36 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 37 H 0.12 2.48 8.06 -52.48 -0.42 2.05 16 38 H 0.27 6.39 8.29 -40.82 -0.34 6.05 16 39 H 0.13 2.62 7.26 -52.48 -0.38 2.24 16 40 H 0.12 1.70 6.19 -52.49 -0.32 1.38 16 41 H 0.12 1.42 6.19 -52.49 -0.33 1.10 16 42 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 351.58 15.07 5.30 5.30 Total: -1.00 -28.71 351.58 -11.50 -40.21 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -4.89 Total: 8.50 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: -7.43 Total: -36.58 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: 0.55 Total: -30.59 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.02 Total: 13.16 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.71 -11.50 -40.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244296249.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.733 kcal (2) G-P(sol) polarization free energy of solvation -28.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds