Wall clock time and date at job start Tue Mar 31 2020 11:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38350 * 119.86665 * 2 1 4 4 C 1.37981 * 120.12989 * 180.02562 * 3 2 1 5 5 C 1.39452 * 119.86751 * 359.97438 * 4 3 2 6 6 C 1.48223 * 120.12870 * 180.02562 * 5 4 3 7 7 C 1.39595 * 119.96755 * 179.97438 * 6 5 4 8 8 C 1.37104 * 120.03132 * 180.02562 * 7 6 5 9 9 C 1.39853 * 119.96784 * 359.97438 * 8 7 6 10 10 C 1.47653 * 120.03167 * 180.02562 * 9 8 7 11 11 C 1.39776 * 120.65786 * 309.98059 * 10 9 8 12 12 C 1.38328 * 118.47356 * 180.02562 * 11 10 9 13 13 C 1.39090 * 119.73805 * 359.97438 * 12 11 10 14 14 N 1.31261 * 121.35780 * 359.74574 * 13 12 11 15 15 C 1.33717 * 121.64112 * 0.52483 * 14 13 12 16 16 C 1.40745 * 119.94847 * 179.75712 * 15 14 13 17 17 H 1.08002 * 120.00336 * 179.72913 * 16 15 14 18 18 C 1.40145 * 119.99749 * 359.44464 * 16 15 14 19 19 N 1.30694 * 120.00245 * 0.28145 * 18 16 15 20 20 Si 1.86803 * 119.99830 * 180.27948 * 18 16 15 21 21 H 1.48496 * 109.47187 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47428 * 120.00302 * 20 18 16 23 23 H 1.48506 * 109.46902 * 240.00378 * 20 18 16 24 24 C 1.39855 * 119.93786 * 0.27218 * 9 8 7 25 25 C 1.37102 * 119.96967 * 359.49121 * 24 9 8 26 26 C 1.39446 * 119.74149 * 0.27570 * 5 4 3 27 27 C 1.37991 * 119.86189 * 359.47618 * 26 5 4 28 28 H 1.08996 * 109.47447 * 89.99891 * 1 2 3 29 29 H 1.09003 * 109.46718 * 209.99379 * 1 2 3 30 30 H 1.08997 * 109.46864 * 329.99524 * 1 2 3 31 31 H 1.07996 * 119.93589 * 359.97438 * 3 2 1 32 32 H 1.08001 * 120.06707 * 179.97438 * 4 3 2 33 33 H 1.08003 * 119.98136 * 0.02562 * 7 6 5 34 34 H 1.07996 * 120.01493 * 180.02562 * 8 7 6 35 35 H 1.08005 * 120.76364 * 0.03761 * 11 10 9 36 36 H 1.07998 * 120.13262 * 179.97438 * 12 11 10 37 37 H 1.08004 * 119.32162 * 179.97438 * 13 12 11 38 38 H 0.97005 * 120.00041 * 179.97438 * 19 18 16 39 39 H 1.08004 * 120.01187 * 179.70070 * 24 9 8 40 40 H 1.08001 * 119.98804 * 180.25085 * 25 24 9 41 41 H 1.08000 * 120.07263 * 179.70044 * 26 5 4 42 42 H 1.08004 * 119.93193 * 180.25221 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1998 0.0000 4 6 3.5758 1.2061 -0.0005 5 6 4.2758 0.0000 -0.0005 6 6 5.7580 0.0001 -0.0005 7 6 6.4554 -1.2092 0.0000 8 6 7.8264 -1.2107 0.0005 9 6 8.5263 0.0001 0.0000 10 6 10.0028 0.0001 0.0000 11 6 10.7156 -0.7720 0.9217 12 6 12.0979 -0.7377 0.8816 13 6 12.7412 0.0542 -0.0636 14 7 12.0634 0.7719 -0.9288 15 6 10.7263 0.7837 -0.9358 16 6 10.0355 1.5704 -1.8764 17 1 8.9556 1.5771 -1.8857 18 6 10.7490 2.3495 -2.7972 19 7 12.0559 2.3414 -2.7860 20 14 9.8321 3.3997 -4.0405 21 1 8.3694 3.2331 -3.8463 22 1 10.1981 4.8262 -3.8494 23 1 10.2000 2.9742 -5.4149 24 6 7.8263 1.2109 0.0047 25 6 6.4553 1.2094 -0.0008 26 6 3.5759 -1.2061 -0.0058 27 6 2.1960 -1.1997 -0.0001 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6528 2.1332 -0.0004 32 1 4.1126 2.1433 -0.0010 33 1 5.9146 -2.1441 0.0000 34 1 8.3656 -2.1464 0.0005 35 1 10.1990 -1.3816 1.6483 36 1 12.6752 -1.3234 1.5815 37 1 13.8208 0.0763 -0.0886 38 1 12.5498 2.8805 -3.4236 39 1 8.3656 2.1466 0.0091 40 1 5.9145 2.1442 -0.0013 41 1 4.1126 -2.1432 -0.0107 42 1 1.6528 -2.1332 0.0000 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244296249.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:32 Heat of formation + Delta-G solvation = 59.469912 kcal Electronic energy + Delta-G solvation = -24029.023419 eV Core-core repulsion = 20709.302907 eV Total energy + Delta-G solvation = -3319.720513 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.92223 -40.13253 -38.93769 -35.59729 -34.85186 -32.82939 -32.52161 -32.09682 -31.35834 -30.07832 -27.87096 -26.88348 -24.49748 -24.16830 -23.31553 -22.34275 -22.13444 -21.19719 -19.42841 -18.25481 -17.55574 -16.87574 -16.45670 -16.33505 -16.04934 -15.98578 -15.11677 -15.07513 -14.77736 -14.69922 -14.64466 -14.28808 -14.09287 -13.87947 -13.76689 -13.67169 -13.02625 -12.98150 -12.93325 -12.82696 -12.74932 -12.52209 -12.15905 -12.09833 -11.90476 -11.58265 -11.45618 -11.27665 -10.51889 -9.99106 -9.83589 -9.78686 -9.52395 -9.50102 -8.55744 -8.32661 -6.48909 -0.25030 0.53652 0.63818 0.69724 1.01394 1.33660 1.36539 1.49560 1.51250 2.18227 2.75259 2.82123 3.22344 3.75767 3.81487 3.93009 4.00842 4.10203 4.13780 4.21238 4.25388 4.32968 4.45768 4.47919 4.56347 4.61449 4.70959 4.78086 4.87762 4.91695 4.94281 5.00049 5.11225 5.15171 5.17431 5.28066 5.30243 5.37768 5.44476 5.52583 5.62260 5.67846 5.72642 5.80676 5.89493 5.99501 6.13134 6.16137 6.20797 6.30301 6.69293 6.96059 8.15164 8.38798 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.015161 B = 0.003443 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.456330 B = 8131.401834 C = 9644.955454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.098 4.098 3 C -0.126 4.126 4 C -0.124 4.124 5 C -0.058 4.058 6 C -0.075 4.075 7 C -0.105 4.105 8 C -0.132 4.132 9 C 0.002 3.998 10 C -0.245 4.245 11 C -0.042 4.042 12 C -0.313 4.313 13 C 0.108 3.892 14 N -0.520 5.520 15 C 0.235 3.765 16 C -0.448 4.448 17 H 0.096 0.904 18 C 0.026 3.974 19 N -0.749 5.749 20 Si 0.975 3.025 21 H -0.255 1.255 22 H -0.262 1.262 23 H -0.266 1.266 24 C -0.120 4.120 25 C -0.112 4.112 26 C -0.120 4.120 27 C -0.124 4.124 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.141 0.859 32 H 0.128 0.872 33 H 0.146 0.854 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.138 0.862 38 H 0.280 0.720 39 H 0.110 0.890 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.175 -3.613 3.932 19.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.098 4.098 3 C -0.143 4.143 4 C -0.142 4.142 5 C -0.058 4.058 6 C -0.075 4.075 7 C -0.123 4.123 8 C -0.150 4.150 9 C 0.002 3.998 10 C -0.250 4.250 11 C -0.067 4.067 12 C -0.335 4.335 13 C -0.058 4.058 14 N -0.232 5.232 15 C 0.111 3.889 16 C -0.479 4.479 17 H 0.114 0.886 18 C -0.197 4.197 19 N -0.370 5.370 20 Si 0.795 3.205 21 H -0.178 1.178 22 H -0.187 1.187 23 H -0.190 1.190 24 C -0.138 4.138 25 C -0.129 4.129 26 C -0.138 4.138 27 C -0.142 4.142 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.159 0.841 32 H 0.146 0.854 33 H 0.164 0.836 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.156 0.844 38 H 0.091 0.909 39 H 0.128 0.872 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -18.567 -2.995 3.190 19.076 hybrid contribution 0.308 0.013 0.102 0.325 sum -18.259 -2.982 3.293 18.792 Atomic orbital electron populations 1.20833 0.89189 1.03712 1.03044 1.20367 0.97634 0.92897 0.98894 1.21232 0.93501 0.98801 1.00801 1.21451 0.94947 0.97586 1.00243 1.18913 0.91065 0.94481 1.01315 1.18931 0.92237 0.93285 1.03068 1.21139 0.93323 0.98044 0.99775 1.21172 0.94427 0.97039 1.02368 1.18856 0.91685 0.93458 0.95846 1.19712 0.92600 1.08412 1.04254 1.21270 0.94131 0.95336 0.95923 1.21573 0.94926 1.10247 1.06802 1.23062 0.99928 0.91883 0.90936 1.68698 1.08166 1.22442 1.23906 1.18980 0.88300 0.90331 0.91248 1.20093 0.95304 1.20705 1.11764 0.88580 1.27003 0.95547 0.97651 0.99506 1.70212 1.08493 1.29098 1.29222 0.85260 0.79670 0.78060 0.77529 1.17811 1.18658 1.19025 1.21129 0.94229 0.97680 1.00806 1.21129 0.93288 0.98240 1.00275 1.21458 0.94851 0.97482 1.00009 1.21258 0.93569 0.98723 1.00633 0.90426 0.90496 0.90705 0.84127 0.85420 0.83645 0.85821 0.85750 0.85392 0.84435 0.90918 0.87203 0.84570 0.84736 0.83778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.01 71.24 0.71 -0.57 16 2 C -0.10 -1.78 5.89 -19.81 -0.12 -1.90 16 3 C -0.13 -2.52 9.68 22.24 0.22 -2.30 16 4 C -0.12 -3.03 9.43 22.50 0.21 -2.82 16 5 C -0.06 -1.56 5.88 -20.04 -0.12 -1.68 16 6 C -0.08 -2.38 5.88 -19.97 -0.12 -2.50 16 7 C -0.11 -3.29 9.39 22.33 0.21 -3.08 16 8 C -0.13 -4.82 9.51 22.39 0.21 -4.61 16 9 C 0.00 0.10 5.03 -20.01 -0.10 0.00 16 10 C -0.25 -11.98 5.53 -19.52 -0.11 -12.09 16 11 C -0.04 -1.87 9.66 22.66 0.22 -1.65 16 12 C -0.31 -13.61 10.10 22.50 0.23 -13.38 16 13 C 0.11 5.27 11.17 84.98 0.95 6.22 16 14 N -0.52 -29.24 7.85 -188.40 -1.48 -30.72 16 15 C 0.24 13.03 6.56 40.37 0.26 13.29 16 16 C -0.45 -24.24 7.96 23.35 0.19 -24.06 16 17 H 0.10 4.97 5.25 -2.91 -0.02 4.96 16 18 C 0.03 1.31 5.50 85.33 0.47 1.78 16 19 N -0.75 -40.50 11.46 21.86 0.25 -40.25 16 20 Si 0.97 38.56 29.56 68.60 2.03 40.58 16 21 H -0.25 -9.83 7.11 99.48 0.71 -9.13 16 22 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 23 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 24 C -0.12 -4.91 7.52 22.39 0.17 -4.74 16 25 C -0.11 -3.82 9.39 22.33 0.21 -3.61 16 26 C -0.12 -2.75 9.43 22.50 0.21 -2.54 16 27 C -0.12 -2.36 9.68 22.24 0.22 -2.14 16 28 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.08 0.72 8.08 -2.39 -0.02 0.70 16 30 H 0.07 0.73 8.08 -2.39 -0.02 0.71 16 31 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 32 H 0.13 2.91 6.19 -2.91 -0.02 2.89 16 33 H 0.15 3.55 6.19 -2.91 -0.02 3.53 16 34 H 0.12 4.21 8.05 -2.91 -0.02 4.19 16 35 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 36 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 37 H 0.14 5.88 8.06 -2.91 -0.02 5.86 16 38 H 0.28 13.63 8.29 -92.70 -0.77 12.87 16 39 H 0.11 4.79 7.26 -2.91 -0.02 4.77 16 40 H 0.14 3.96 6.19 -2.91 -0.02 3.94 16 41 H 0.13 2.66 6.19 -2.91 -0.02 2.64 16 42 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -65.34 351.58 5.97 -59.37 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 1.04 Total: 33.40 kcal Atomic # 6 Polarization: -66.51 SS G_CDS: 4.12 Total: -62.39 kcal Atomic # 7 Polarization: -69.74 SS G_CDS: -1.23 Total: -70.97 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.58 kcal Total: -65.34 5.97 -59.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244296249.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.841 kcal (2) G-P(sol) polarization free energy of solvation -65.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds