Wall clock time and date at job start Tue Mar 31 2020 11:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38351 * 119.87012 * 2 1 4 4 C 1.37982 * 120.13088 * 179.97438 * 3 2 1 5 5 C 1.39446 * 119.87007 * 359.97438 * 4 3 2 6 6 C 1.48222 * 120.13499 * 180.02562 * 5 4 3 7 7 C 1.39577 * 119.98054 * 180.02562 * 6 5 4 8 8 C 1.37605 * 120.02831 * 180.02562 * 7 6 5 9 9 C 1.39786 * 119.97121 * 0.02562 * 8 7 6 10 10 C 1.47814 * 120.02280 * 179.97438 * 9 8 7 11 11 C 1.40350 * 120.35423 * 180.02562 * 10 9 8 12 12 C 1.36621 * 118.60624 * 179.97438 * 11 10 9 13 13 C 1.40910 * 119.26010 * 0.02562 * 12 11 10 14 14 C 1.40925 * 119.67844 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99550 * 0.02562 * 14 13 12 16 16 C 1.40089 * 120.00528 * 179.97438 * 14 13 12 17 17 N 1.30725 * 119.99908 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00337 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46839 * 60.00265 * 18 16 14 20 20 H 1.48503 * 109.47278 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47514 * 300.00410 * 18 16 14 22 22 N 1.33816 * 120.64891 * 359.75204 * 13 12 11 23 23 C 1.31157 * 121.51035 * 0.51449 * 22 13 12 24 24 C 1.39784 * 119.95338 * 0.24328 * 9 8 7 25 25 C 1.37607 * 119.97502 * 359.49740 * 24 9 8 26 26 C 1.39448 * 119.73909 * 0.27612 * 5 4 3 27 27 C 1.37994 * 119.86464 * 359.46682 * 26 5 4 28 28 H 1.09002 * 109.46669 * 89.99609 * 1 2 3 29 29 H 1.08995 * 109.47286 * 209.99658 * 1 2 3 30 30 H 1.08998 * 109.47085 * 329.99936 * 1 2 3 31 31 H 1.07993 * 119.93080 * 359.97438 * 3 2 1 32 32 H 1.07998 * 120.06691 * 179.97438 * 4 3 2 33 33 H 1.08003 * 119.98459 * 0.04092 * 7 6 5 34 34 H 1.07989 * 120.01516 * 179.97438 * 8 7 6 35 35 H 1.08005 * 120.69559 * 0.02562 * 11 10 9 36 36 H 1.08001 * 120.37178 * 179.97438 * 12 11 10 37 37 H 0.96996 * 119.99918 * 180.02562 * 17 16 14 38 38 H 1.08002 * 119.66387 * 179.76548 * 23 22 13 39 39 H 1.08000 * 120.00915 * 179.75143 * 24 9 8 40 40 H 1.08002 * 119.98834 * 180.22995 * 25 24 9 41 41 H 1.07994 * 120.07149 * 179.72654 * 26 5 4 42 42 H 1.07998 * 119.93457 * 180.25219 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1997 0.0000 4 6 3.5759 1.2060 0.0005 5 6 4.2759 0.0000 0.0016 6 6 5.7581 -0.0002 0.0028 7 6 6.4555 -1.2092 0.0033 8 6 7.8315 -1.2105 0.0049 9 6 8.5309 -0.0002 0.0065 10 6 10.0091 -0.0002 0.0088 11 6 10.7183 1.2109 0.0110 12 6 12.0839 1.1693 0.0136 13 6 12.7348 -0.0805 0.0135 14 6 14.1431 -0.1338 0.0167 15 1 14.7180 0.7805 0.0197 16 6 14.7972 -1.3725 0.0172 17 7 14.1014 -2.4792 0.0141 18 14 16.6639 -1.4431 0.0207 19 1 17.1825 -0.7631 1.2348 20 1 17.1057 -2.8609 0.0200 21 1 17.1874 -0.7614 -1.1902 22 7 12.0289 -1.2173 0.0158 23 6 10.7174 -1.2098 0.0083 24 6 7.8315 1.2101 0.0117 25 6 6.4555 1.2090 0.0047 26 6 3.5759 -1.2061 -0.0037 27 6 2.1960 -1.1998 0.0012 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5138 31 1 1.6529 2.1331 -0.0004 32 1 4.1127 2.1431 0.0001 33 1 5.9148 -2.1442 0.0022 34 1 8.3709 -2.1460 0.0057 35 1 10.1955 2.1560 0.0115 36 1 12.6581 2.0839 0.0149 37 1 14.5543 -3.3369 0.0148 38 1 10.1775 -2.1452 0.0066 39 1 8.3710 2.1457 0.0170 40 1 5.9149 2.1440 0.0049 41 1 4.1126 -2.1433 -0.0073 42 1 1.6528 -2.1332 0.0012 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244296958.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:35 Heat of formation + Delta-G solvation = 67.565564 kcal Electronic energy + Delta-G solvation = -23219.200333 eV Core-core repulsion = 19899.830874 eV Total energy + Delta-G solvation = -3319.369459 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.75937 -38.73104 -37.61817 -34.22557 -33.37143 -31.47665 -31.29936 -30.81817 -30.08457 -28.98642 -26.79463 -25.06476 -23.59072 -22.65035 -22.19444 -21.13732 -20.56968 -19.96212 -17.72842 -17.23308 -15.87213 -15.75537 -15.40049 -15.24608 -14.53462 -14.38142 -13.96876 -13.89534 -13.76134 -13.47693 -13.35618 -12.93739 -12.86559 -12.74662 -12.39995 -12.35581 -12.14927 -11.76209 -11.73881 -11.30123 -11.27862 -11.09781 -11.06059 -10.81374 -10.52176 -10.27728 -10.05557 -9.80959 -9.26312 -8.97921 -8.55057 -8.45473 -8.11306 -7.73667 -7.06506 -6.64042 -4.68098 0.81643 1.39058 1.88669 1.89775 2.73914 2.95825 2.97577 2.98403 3.11640 3.76045 3.79729 4.36714 4.69504 4.70811 4.72841 4.87670 4.96052 5.10675 5.28680 5.33767 5.38816 5.42060 5.56149 5.61103 5.63422 5.76659 5.79188 5.91635 5.95344 6.02356 6.03680 6.09888 6.28259 6.41308 6.46279 6.53784 6.54737 6.62286 6.67739 6.83184 6.88850 7.01824 7.02350 7.03607 7.22180 7.38092 7.54738 7.69445 7.84315 7.99768 8.39491 8.69353 9.89876 10.05506 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.046354 B = 0.002101 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.901293 B =13321.739183 C =13910.492577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.104 4.104 3 C -0.116 4.116 4 C -0.119 4.119 5 C -0.023 4.023 6 C -0.106 4.106 7 C -0.090 4.090 8 C -0.149 4.149 9 C 0.045 3.955 10 C -0.283 4.283 11 C -0.034 4.034 12 C -0.271 4.271 13 C 0.250 3.750 14 C -0.402 4.402 15 H 0.088 0.912 16 C 0.061 3.939 17 N -0.696 5.696 18 Si 0.914 3.086 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.262 1.262 22 N -0.488 5.488 23 C 0.160 3.840 24 C -0.152 4.152 25 C -0.091 4.091 26 C -0.119 4.119 27 C -0.116 4.116 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.279 0.721 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.124 0.876 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.337 2.600 -0.046 17.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.104 4.104 3 C -0.134 4.134 4 C -0.137 4.137 5 C -0.023 4.023 6 C -0.106 4.106 7 C -0.108 4.108 8 C -0.168 4.168 9 C 0.044 3.956 10 C -0.288 4.288 11 C -0.057 4.057 12 C -0.294 4.294 13 C 0.127 3.873 14 C -0.431 4.431 15 H 0.107 0.893 16 C -0.167 4.167 17 N -0.316 5.316 18 Si 0.737 3.263 19 H -0.187 1.187 20 H -0.199 1.199 21 H -0.187 1.187 22 N -0.200 5.200 23 C -0.010 4.010 24 C -0.170 4.170 25 C -0.109 4.109 26 C -0.137 4.137 27 C -0.134 4.134 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.134 0.866 34 H 0.140 0.860 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.090 0.910 38 H 0.141 0.859 39 H 0.136 0.864 40 H 0.132 0.868 41 H 0.142 0.858 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.749 1.591 -0.038 16.824 hybrid contribution 0.333 0.801 -0.008 0.868 sum -16.416 2.393 -0.047 16.589 Atomic orbital electron populations 1.20755 0.91524 1.02478 1.02032 1.19906 0.95843 0.93281 1.01406 1.20912 0.94026 0.97337 1.01132 1.21231 0.93932 0.97673 1.00877 1.18885 0.92274 0.93062 0.98030 1.18535 0.90754 0.93647 1.07673 1.20989 0.94049 0.96661 0.99112 1.21105 0.93440 0.97935 1.04282 1.18980 0.92850 0.92229 0.91568 1.19062 0.90623 0.95014 1.24089 1.20676 0.93974 0.95884 0.95163 1.21429 0.94183 0.98281 1.15487 1.18688 0.93800 0.86800 0.87985 1.19790 0.90627 0.93695 1.38999 0.89341 1.26225 1.01256 0.95408 0.93774 1.70111 1.37504 0.98533 1.25424 0.86274 0.81372 0.78501 0.80168 1.18651 1.19913 1.18656 1.68808 1.04782 1.28589 1.17810 1.22812 0.91582 0.95027 0.91561 1.21071 0.93412 0.97852 1.04674 1.20971 0.94024 0.96636 0.99299 1.21248 0.93938 0.97709 1.00770 1.20923 0.94036 0.97346 1.01070 0.91468 0.91779 0.91798 0.86328 0.85874 0.86627 0.85985 0.88252 0.88079 0.90981 0.85901 0.86367 0.86753 0.85796 0.86295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 36.01 0.36 -0.45 16 2 C -0.10 -1.07 5.89 -104.54 -0.62 -1.69 16 3 C -0.12 -1.24 9.68 -39.63 -0.38 -1.62 16 4 C -0.12 -1.45 9.43 -39.23 -0.37 -1.82 16 5 C -0.02 -0.31 5.88 -104.89 -0.62 -0.92 16 6 C -0.11 -1.62 5.88 -104.79 -0.62 -2.23 16 7 C -0.09 -1.39 9.41 -39.31 -0.37 -1.76 16 8 C -0.15 -2.60 9.42 -39.23 -0.37 -2.97 16 9 C 0.04 0.86 5.88 -104.82 -0.62 0.24 16 10 C -0.28 -6.21 5.92 -104.46 -0.62 -6.83 16 11 C -0.03 -0.74 9.46 -39.37 -0.37 -1.12 16 12 C -0.27 -6.40 9.76 -39.15 -0.38 -6.79 16 13 C 0.25 6.56 6.55 -84.97 -0.56 6.01 16 14 C -0.40 -10.17 9.12 -37.87 -0.35 -10.52 16 15 H 0.09 2.06 7.85 -52.48 -0.41 1.64 16 16 C 0.06 1.47 5.50 -17.33 -0.10 1.37 16 17 N -0.70 -17.59 11.44 55.55 0.64 -16.95 16 18 Si 0.91 17.43 29.56 -169.99 -5.02 12.41 16 19 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 20 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 21 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 22 N -0.49 -12.99 7.83 -10.83 -0.08 -13.08 16 23 C 0.16 3.78 10.60 -17.11 -0.18 3.60 16 24 C -0.15 -2.60 9.42 -39.23 -0.37 -2.97 16 25 C -0.09 -1.40 9.41 -39.31 -0.37 -1.77 16 26 C -0.12 -1.45 9.43 -39.22 -0.37 -1.82 16 27 C -0.12 -1.24 9.68 -39.63 -0.38 -1.62 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 30 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 31 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.12 1.33 6.19 -52.49 -0.33 1.01 16 33 H 0.12 1.49 6.19 -52.48 -0.32 1.17 16 34 H 0.12 2.01 6.20 -52.49 -0.33 1.69 16 35 H 0.10 1.87 6.28 -52.48 -0.33 1.54 16 36 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 37 H 0.28 6.33 8.29 -40.82 -0.34 6.00 16 38 H 0.12 2.60 6.20 -52.49 -0.33 2.28 16 39 H 0.12 1.89 6.23 -52.49 -0.33 1.57 16 40 H 0.11 1.46 6.19 -52.49 -0.32 1.13 16 41 H 0.12 1.36 6.19 -52.49 -0.33 1.03 16 42 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 350.77 15.07 5.29 5.29 Total: -1.00 -28.30 350.77 -11.51 -39.82 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -4.68 Total: 8.19 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: -7.64 Total: -35.67 kcal Atomic # 7 Polarization: -30.58 SS G_CDS: 0.55 Total: -30.03 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.02 Total: 12.41 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.30 -11.51 -39.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244296958.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.382 kcal (2) G-P(sol) polarization free energy of solvation -28.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds