Wall clock time and date at job start Tue Mar 31 2020 11:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38351 * 119.87012 * 2 1 4 4 C 1.37982 * 120.13088 * 179.97438 * 3 2 1 5 5 C 1.39446 * 119.87007 * 359.97438 * 4 3 2 6 6 C 1.48222 * 120.13499 * 180.02562 * 5 4 3 7 7 C 1.39577 * 119.98054 * 180.02562 * 6 5 4 8 8 C 1.37605 * 120.02831 * 180.02562 * 7 6 5 9 9 C 1.39786 * 119.97121 * 0.02562 * 8 7 6 10 10 C 1.47814 * 120.02280 * 179.97438 * 9 8 7 11 11 C 1.40350 * 120.35423 * 180.02562 * 10 9 8 12 12 C 1.36621 * 118.60624 * 179.97438 * 11 10 9 13 13 C 1.40910 * 119.26010 * 0.02562 * 12 11 10 14 14 C 1.40925 * 119.67844 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99550 * 0.02562 * 14 13 12 16 16 C 1.40089 * 120.00528 * 179.97438 * 14 13 12 17 17 N 1.30725 * 119.99908 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00337 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46839 * 60.00265 * 18 16 14 20 20 H 1.48503 * 109.47278 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47514 * 300.00410 * 18 16 14 22 22 N 1.33816 * 120.64891 * 359.75204 * 13 12 11 23 23 C 1.31157 * 121.51035 * 0.51449 * 22 13 12 24 24 C 1.39784 * 119.95338 * 0.24328 * 9 8 7 25 25 C 1.37607 * 119.97502 * 359.49740 * 24 9 8 26 26 C 1.39448 * 119.73909 * 0.27612 * 5 4 3 27 27 C 1.37994 * 119.86464 * 359.46682 * 26 5 4 28 28 H 1.09002 * 109.46669 * 89.99609 * 1 2 3 29 29 H 1.08995 * 109.47286 * 209.99658 * 1 2 3 30 30 H 1.08998 * 109.47085 * 329.99936 * 1 2 3 31 31 H 1.07993 * 119.93080 * 359.97438 * 3 2 1 32 32 H 1.07998 * 120.06691 * 179.97438 * 4 3 2 33 33 H 1.08003 * 119.98459 * 0.04092 * 7 6 5 34 34 H 1.07989 * 120.01516 * 179.97438 * 8 7 6 35 35 H 1.08005 * 120.69559 * 0.02562 * 11 10 9 36 36 H 1.08001 * 120.37178 * 179.97438 * 12 11 10 37 37 H 0.96996 * 119.99918 * 180.02562 * 17 16 14 38 38 H 1.08002 * 119.66387 * 179.76548 * 23 22 13 39 39 H 1.08000 * 120.00915 * 179.75143 * 24 9 8 40 40 H 1.08002 * 119.98834 * 180.22995 * 25 24 9 41 41 H 1.07994 * 120.07149 * 179.72654 * 26 5 4 42 42 H 1.07998 * 119.93457 * 180.25219 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1997 0.0000 4 6 3.5759 1.2060 0.0005 5 6 4.2759 0.0000 0.0016 6 6 5.7581 -0.0002 0.0028 7 6 6.4555 -1.2092 0.0033 8 6 7.8315 -1.2105 0.0049 9 6 8.5309 -0.0002 0.0065 10 6 10.0091 -0.0002 0.0088 11 6 10.7183 1.2109 0.0110 12 6 12.0839 1.1693 0.0136 13 6 12.7348 -0.0805 0.0135 14 6 14.1431 -0.1338 0.0167 15 1 14.7180 0.7805 0.0197 16 6 14.7972 -1.3725 0.0172 17 7 14.1014 -2.4792 0.0141 18 14 16.6639 -1.4431 0.0207 19 1 17.1825 -0.7631 1.2348 20 1 17.1057 -2.8609 0.0200 21 1 17.1874 -0.7614 -1.1902 22 7 12.0289 -1.2173 0.0158 23 6 10.7174 -1.2098 0.0083 24 6 7.8315 1.2101 0.0117 25 6 6.4555 1.2090 0.0047 26 6 3.5759 -1.2061 -0.0037 27 6 2.1960 -1.1998 0.0012 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5138 31 1 1.6529 2.1331 -0.0004 32 1 4.1127 2.1431 0.0001 33 1 5.9148 -2.1442 0.0022 34 1 8.3709 -2.1460 0.0057 35 1 10.1955 2.1560 0.0115 36 1 12.6581 2.0839 0.0149 37 1 14.5543 -3.3369 0.0148 38 1 10.1775 -2.1452 0.0066 39 1 8.3710 2.1457 0.0170 40 1 5.9149 2.1440 0.0049 41 1 4.1126 -2.1433 -0.0073 42 1 1.6528 -2.1332 0.0012 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244296958.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:35 Heat of formation + Delta-G solvation = 56.825325 kcal Electronic energy + Delta-G solvation = -23219.666065 eV Core-core repulsion = 19899.830874 eV Total energy + Delta-G solvation = -3319.835191 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.89937 -40.17461 -38.99229 -35.81333 -34.60359 -32.90783 -32.54507 -32.20779 -31.32657 -30.37066 -28.07389 -26.41631 -24.85429 -24.01491 -23.54737 -22.42755 -21.91116 -21.21912 -19.47962 -18.41823 -17.51082 -17.01307 -16.53750 -16.44483 -15.92306 -15.83511 -15.09124 -14.94779 -14.77859 -14.67976 -14.57871 -14.39766 -14.28040 -14.04573 -13.77145 -13.61078 -13.14353 -12.96282 -12.95840 -12.76352 -12.69848 -12.56965 -12.23903 -12.04660 -11.84944 -11.78076 -11.40297 -11.36953 -10.68651 -10.17348 -9.84763 -9.81789 -9.55600 -9.52921 -8.49774 -8.39237 -6.51783 -0.33547 0.53479 0.58617 0.59585 1.09505 1.33457 1.39219 1.52460 1.61506 2.18246 2.65609 2.90089 3.25737 3.74933 3.79387 3.91815 3.99347 4.02150 4.10056 4.13960 4.24796 4.25772 4.37331 4.41213 4.56158 4.60055 4.66036 4.78983 4.85259 4.87482 4.93844 4.98172 5.08638 5.11345 5.13906 5.25052 5.28954 5.39620 5.42027 5.46142 5.52012 5.61798 5.72835 5.77505 5.89046 6.00971 6.05387 6.12695 6.18114 6.23149 6.61611 6.86291 8.09264 8.33283 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.046354 B = 0.002101 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.901293 B =13321.739183 C =13910.492577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.124 4.124 4 C -0.123 4.123 5 C -0.057 4.057 6 C -0.087 4.087 7 C -0.099 4.099 8 C -0.150 4.150 9 C 0.004 3.996 10 C -0.269 4.269 11 C -0.040 4.040 12 C -0.287 4.287 13 C 0.216 3.784 14 C -0.445 4.445 15 H 0.096 0.904 16 C 0.018 3.982 17 N -0.743 5.743 18 Si 0.993 3.007 19 H -0.256 1.256 20 H -0.267 1.267 21 H -0.256 1.256 22 N -0.521 5.521 23 C 0.132 3.868 24 C -0.147 4.147 25 C -0.099 4.099 26 C -0.125 4.125 27 C -0.125 4.125 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.142 0.858 32 H 0.134 0.866 33 H 0.140 0.860 34 H 0.122 0.878 35 H 0.131 0.869 36 H 0.115 0.885 37 H 0.283 0.717 38 H 0.136 0.864 39 H 0.128 0.872 40 H 0.143 0.857 41 H 0.131 0.869 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.663 3.611 -0.046 20.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.142 4.142 4 C -0.141 4.141 5 C -0.057 4.057 6 C -0.088 4.088 7 C -0.117 4.117 8 C -0.168 4.168 9 C 0.003 3.997 10 C -0.274 4.274 11 C -0.063 4.063 12 C -0.309 4.309 13 C 0.092 3.908 14 C -0.475 4.475 15 H 0.114 0.886 16 C -0.205 4.205 17 N -0.364 5.364 18 Si 0.812 3.188 19 H -0.180 1.180 20 H -0.191 1.191 21 H -0.180 1.180 22 N -0.234 5.234 23 C -0.036 4.036 24 C -0.165 4.165 25 C -0.116 4.116 26 C -0.143 4.143 27 C -0.143 4.143 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.160 0.840 32 H 0.151 0.849 33 H 0.158 0.842 34 H 0.140 0.860 35 H 0.149 0.851 36 H 0.133 0.867 37 H 0.094 0.906 38 H 0.153 0.847 39 H 0.146 0.854 40 H 0.161 0.839 41 H 0.149 0.851 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -20.128 2.605 -0.038 20.296 hybrid contribution 0.727 0.552 -0.011 0.913 sum -19.401 3.157 -0.049 19.656 Atomic orbital electron populations 1.20832 0.89292 1.03655 1.03033 1.20365 0.97596 0.92968 0.99058 1.21243 0.93636 0.98678 1.00634 1.21452 0.94825 0.97569 1.00229 1.18921 0.91227 0.94398 1.01145 1.18908 0.92144 0.93461 1.04242 1.21247 0.93290 0.98150 0.99015 1.21228 0.94453 0.97493 1.03648 1.18965 0.91386 0.93915 0.95409 1.19367 0.92456 0.94418 1.21139 1.21028 0.93549 0.97253 0.94451 1.21625 0.95224 0.98022 1.15998 1.19161 0.94800 0.87738 0.89060 1.20111 0.90856 0.94866 1.41639 0.88558 1.27159 1.06306 0.94479 0.92564 1.70212 1.39667 0.99203 1.27323 0.85103 0.74700 0.78715 0.80295 1.18039 1.19143 1.18046 1.68741 1.06056 1.29525 1.19038 1.23130 0.91265 0.96514 0.92642 1.21242 0.94350 0.97411 1.03517 1.21273 0.93368 0.98058 0.98925 1.21455 0.94866 0.97616 1.00322 1.21238 0.93612 0.98710 1.00699 0.90408 0.90723 0.90631 0.83977 0.84855 0.84231 0.86031 0.85090 0.86688 0.90575 0.84709 0.85377 0.83894 0.85130 0.84131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 71.24 0.71 -0.46 16 2 C -0.10 -1.68 5.89 -19.81 -0.12 -1.79 16 3 C -0.12 -2.20 9.68 22.24 0.22 -1.98 16 4 C -0.12 -2.61 9.43 22.50 0.21 -2.40 16 5 C -0.06 -1.40 5.88 -20.04 -0.12 -1.52 16 6 C -0.09 -2.49 5.88 -19.97 -0.12 -2.60 16 7 C -0.10 -2.93 9.41 22.44 0.21 -2.72 16 8 C -0.15 -5.19 9.42 22.49 0.21 -4.98 16 9 C 0.00 0.16 5.88 -20.00 -0.12 0.04 16 10 C -0.27 -12.09 5.92 -19.76 -0.12 -12.21 16 11 C -0.04 -1.76 9.46 22.41 0.21 -1.55 16 12 C -0.29 -14.00 9.76 22.55 0.22 -13.78 16 13 C 0.22 11.96 6.55 40.15 0.26 12.22 16 14 C -0.44 -23.70 9.12 23.38 0.21 -23.49 16 15 H 0.10 4.70 7.85 -2.91 -0.02 4.68 16 16 C 0.02 0.91 5.50 85.31 0.47 1.38 16 17 N -0.74 -39.60 11.44 21.85 0.25 -39.35 16 18 Si 0.99 36.88 29.56 68.60 2.03 38.91 16 19 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 20 H -0.27 -9.44 7.11 99.48 0.71 -8.74 16 21 H -0.26 -9.16 7.11 99.48 0.71 -8.46 16 22 N -0.52 -29.39 7.83 -188.18 -1.47 -30.86 16 23 C 0.13 6.54 10.60 85.26 0.90 7.45 16 24 C -0.15 -4.84 9.42 22.49 0.21 -4.62 16 25 C -0.10 -2.79 9.41 22.45 0.21 -2.58 16 26 C -0.12 -2.72 9.43 22.50 0.21 -2.51 16 27 C -0.12 -2.26 9.68 22.24 0.22 -2.05 16 28 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.65 8.08 -2.39 -0.02 0.63 16 30 H 0.07 0.65 8.08 -2.39 -0.02 0.63 16 31 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 32 H 0.13 2.44 6.19 -2.91 -0.02 2.42 16 33 H 0.14 3.35 6.19 -2.91 -0.02 3.33 16 34 H 0.12 4.10 6.20 -2.92 -0.02 4.08 16 35 H 0.13 4.81 6.28 -2.91 -0.02 4.79 16 36 H 0.12 5.09 8.06 -2.91 -0.02 5.07 16 37 H 0.28 13.57 8.29 -92.71 -0.77 12.80 16 38 H 0.14 6.06 6.20 -2.91 -0.02 6.05 16 39 H 0.13 3.86 6.23 -2.91 -0.02 3.84 16 40 H 0.14 3.17 6.19 -2.91 -0.02 3.15 16 41 H 0.13 2.55 6.19 -2.91 -0.02 2.53 16 42 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -64.77 350.77 5.97 -58.81 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: 1.06 Total: 32.66 kcal Atomic # 6 Polarization: -64.26 SS G_CDS: 4.11 Total: -60.15 kcal Atomic # 7 Polarization: -68.99 SS G_CDS: -1.22 Total: -70.22 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 2.03 Total: 38.91 kcal Total: -64.77 5.97 -58.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244296958.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.631 kcal (2) G-P(sol) polarization free energy of solvation -64.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds