Wall clock time and date at job start Tue Mar 31 2020 11:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38322 * 119.87272 * 2 1 4 4 C 1.38009 * 120.12610 * 179.72176 * 3 2 1 5 5 C 1.39380 * 119.87025 * 0.26187 * 4 3 2 6 6 C 1.48318 * 120.12307 * 180.02562 * 5 4 3 7 7 C 1.39446 * 120.00359 * 359.72610 * 6 5 4 8 8 C 1.37751 * 119.99719 * 179.76635 * 7 6 5 9 9 C 1.39439 * 120.00489 * 0.50316 * 8 7 6 10 10 C 1.48334 * 120.00046 * 179.72436 * 9 8 7 11 11 C 1.39748 * 120.41480 * 180.02562 * 10 9 8 12 12 N 1.31907 * 121.14550 * 180.02562 * 11 10 9 13 13 C 1.31528 * 122.12457 * 359.97438 * 12 11 10 14 14 C 1.40779 * 120.67588 * 0.02562 * 13 12 11 15 15 C 1.41432 * 120.60329 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99835 * 23.39583 * 15 14 13 17 17 C 1.39928 * 120.00178 * 203.39053 * 15 14 13 18 18 N 1.30828 * 120.00150 * 17.36499 * 17 15 14 19 19 Si 1.86804 * 120.00120 * 197.36101 * 17 15 14 20 20 H 1.48497 * 109.47249 * 94.69208 * 19 17 15 21 21 H 1.48504 * 109.46961 * 214.68858 * 19 17 15 22 22 H 1.48499 * 109.47180 * 334.68787 * 19 17 15 23 23 C 1.39181 * 120.41442 * 359.74314 * 10 9 8 24 24 C 1.39439 * 119.99858 * 359.74898 * 9 8 7 25 25 C 1.37752 * 120.00043 * 359.97438 * 24 9 8 26 26 C 1.39379 * 119.75111 * 359.97438 * 5 4 3 27 27 C 1.38008 * 119.87381 * 0.02562 * 26 5 4 28 28 H 1.08997 * 109.47663 * 89.99707 * 1 2 3 29 29 H 1.08998 * 109.47153 * 209.99748 * 1 2 3 30 30 H 1.09004 * 109.47415 * 329.99537 * 1 2 3 31 31 H 1.08002 * 119.94060 * 0.02562 * 3 2 1 32 32 H 1.07994 * 120.06746 * 180.23075 * 4 3 2 33 33 H 1.08004 * 119.99877 * 359.97438 * 7 6 5 34 34 H 1.08003 * 119.99797 * 180.27017 * 8 7 6 35 35 H 1.08002 * 119.42531 * 0.02562 * 11 10 9 36 36 H 1.07996 * 119.66230 * 179.97438 * 13 12 11 37 37 H 0.97004 * 120.00270 * 179.97438 * 18 17 15 38 38 H 1.08001 * 120.95636 * 0.02562 * 23 10 9 39 39 H 1.07994 * 119.99525 * 180.02562 * 24 9 8 40 40 H 1.08007 * 119.99745 * 179.97438 * 25 24 9 41 41 H 1.07999 * 120.06101 * 180.02562 * 26 5 4 42 42 H 1.07994 * 119.93578 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1994 0.0000 4 6 3.5760 1.2055 0.0058 5 6 4.2755 0.0000 0.0061 6 6 5.7587 0.0000 0.0129 7 6 6.4560 1.2076 0.0132 8 6 7.8334 1.2075 0.0244 9 6 8.5306 -0.0001 0.0248 10 6 10.0140 -0.0001 0.0306 11 6 10.7215 -1.2052 0.0306 12 7 12.0404 -1.2220 0.0362 13 6 12.7540 -0.1171 0.0417 14 6 12.1265 1.1431 0.0423 15 6 12.8952 2.3302 0.0487 16 1 13.9109 2.3178 -0.3183 17 6 12.3399 3.5208 0.5305 18 7 11.2651 3.4868 1.2756 19 14 13.1333 5.1588 0.1097 20 1 12.4678 5.7390 -1.0843 21 1 12.9877 6.0888 1.2583 22 1 14.5750 4.9509 -0.1792 23 6 10.7186 1.2002 0.0304 24 6 7.8334 -1.2076 0.0192 25 6 6.4559 -1.2076 0.0138 26 6 3.5760 -1.2055 0.0011 27 6 2.1959 -1.1995 -0.0046 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6529 2.1330 0.0004 32 1 4.1129 2.1425 0.0096 33 1 5.9160 2.1430 0.0081 34 1 8.3735 2.1428 0.0290 35 1 10.1789 -2.1390 0.0258 36 1 13.8322 -0.1773 0.0467 37 1 10.8804 4.3121 1.6099 38 1 10.2011 2.1482 0.0263 39 1 8.3735 -2.1429 0.0199 40 1 5.9160 -2.1430 0.0090 41 1 4.1130 -2.1426 0.0018 42 1 1.6529 -2.1330 -0.0081 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244297509.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:38 Heat of formation + Delta-G solvation = 58.606996 kcal Electronic energy + Delta-G solvation = -23589.351439 eV Core-core repulsion = 20269.593507 eV Total energy + Delta-G solvation = -3319.757932 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.87405 -38.83767 -37.70314 -34.21757 -33.83661 -31.62247 -31.45584 -30.63013 -30.16852 -28.72422 -26.12368 -25.74719 -23.57429 -22.99037 -22.11598 -21.15976 -20.66018 -19.97987 -17.65247 -17.07292 -15.88594 -15.76595 -15.50670 -15.16457 -14.94778 -14.52099 -14.05474 -13.98247 -13.83013 -13.58197 -13.37345 -13.04281 -12.95762 -12.77427 -12.47113 -12.39802 -11.94732 -11.81833 -11.64951 -11.46801 -11.38614 -11.27577 -11.04306 -10.85289 -10.67400 -10.34409 -9.89477 -9.67681 -9.45364 -9.02985 -8.61995 -8.44867 -8.17064 -7.89815 -7.13050 -6.90602 -4.57952 0.71091 1.33664 1.77808 1.80538 2.64046 2.93766 2.98179 3.01477 3.12401 3.72973 3.78885 4.30396 4.58489 4.64979 4.65702 4.80382 4.89135 5.05642 5.21993 5.27715 5.35454 5.36150 5.43803 5.50556 5.57867 5.59086 5.74714 5.84953 5.94505 5.95672 6.02176 6.15876 6.30722 6.32993 6.40120 6.48467 6.50955 6.65257 6.71629 6.75022 6.92226 6.94625 6.97721 7.08129 7.17735 7.34654 7.60698 7.75846 7.83727 8.32449 8.58015 8.60997 9.53423 9.97164 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018201 B = 0.002781 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.973280 B =10066.339337 C =11521.467021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.098 4.098 3 C -0.117 4.117 4 C -0.113 4.113 5 C -0.032 4.032 6 C -0.074 4.074 7 C -0.105 4.105 8 C -0.113 4.113 9 C 0.000 4.000 10 C -0.097 4.097 11 C -0.023 4.023 12 N -0.470 5.470 13 C -0.016 4.016 14 C 0.060 3.940 15 C -0.448 4.448 16 H 0.085 0.915 17 C 0.074 3.926 18 N -0.790 5.790 19 Si 0.913 3.087 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.260 1.260 23 C -0.115 4.115 24 C -0.120 4.120 25 C -0.107 4.107 26 C -0.113 4.113 27 C -0.118 4.118 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.284 0.716 38 H 0.134 0.866 39 H 0.126 0.874 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.570 -2.141 -1.819 17.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.098 4.098 3 C -0.135 4.135 4 C -0.131 4.131 5 C -0.032 4.032 6 C -0.074 4.074 7 C -0.123 4.123 8 C -0.130 4.130 9 C -0.001 4.001 10 C -0.099 4.099 11 C -0.181 4.181 12 N -0.177 5.177 13 C -0.177 4.177 14 C 0.055 3.945 15 C -0.478 4.478 16 H 0.103 0.897 17 C -0.145 4.145 18 N -0.414 5.414 19 Si 0.737 3.263 20 H -0.192 1.192 21 H -0.201 1.201 22 H -0.183 1.183 23 C -0.140 4.140 24 C -0.138 4.138 25 C -0.125 4.125 26 C -0.131 4.131 27 C -0.136 4.136 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.149 0.851 35 H 0.140 0.860 36 H 0.145 0.855 37 H 0.095 0.905 38 H 0.151 0.849 39 H 0.144 0.856 40 H 0.138 0.862 41 H 0.143 0.857 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.301 -2.786 -1.668 17.603 hybrid contribution -0.094 1.669 -0.017 1.672 sum -17.395 -1.118 -1.686 17.512 Atomic orbital electron populations 1.20772 0.91423 1.02586 1.02128 1.19932 0.95934 0.93272 1.00703 1.20940 0.94009 0.97448 1.01142 1.21266 0.94006 0.97735 1.00068 1.18865 0.92083 0.93236 0.99024 1.18664 0.90989 0.93699 1.04086 1.21072 0.94046 0.96913 1.00247 1.21315 0.93493 0.98550 0.99689 1.19082 0.92972 0.92679 0.95330 1.19480 0.90742 0.95572 1.04156 1.21802 0.89872 0.95201 1.11193 1.66946 1.07682 1.32630 1.10408 1.22562 0.98177 0.87827 1.09119 1.18488 0.92516 0.93711 0.89741 1.19581 1.00296 0.92091 1.35813 0.89723 1.25980 0.94541 1.01637 0.92303 1.69785 1.18604 1.30466 1.22581 0.86212 0.80731 0.80325 0.79063 1.19171 1.20104 1.18330 1.21878 0.94161 0.96348 1.01594 1.21169 0.93513 0.97995 1.01143 1.21027 0.93982 0.96876 1.00590 1.21243 0.93987 0.97653 1.00249 1.20929 0.94001 0.97420 1.01226 0.91363 0.91703 0.91696 0.86152 0.85664 0.86213 0.85096 0.86004 0.85519 0.90478 0.84871 0.85597 0.86227 0.85707 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.00 36.00 0.36 -0.44 16 2 C -0.10 -0.98 5.88 -104.56 -0.62 -1.60 16 3 C -0.12 -1.23 9.68 -39.63 -0.38 -1.62 16 4 C -0.11 -1.36 9.43 -39.24 -0.37 -1.73 16 5 C -0.03 -0.43 5.88 -104.90 -0.62 -1.04 16 6 C -0.07 -1.12 5.88 -104.85 -0.62 -1.73 16 7 C -0.10 -1.65 9.41 -39.31 -0.37 -2.02 16 8 C -0.11 -2.07 9.42 -39.31 -0.37 -2.44 16 9 C 0.00 0.00 5.88 -104.85 -0.62 -0.61 16 10 C -0.10 -2.23 5.88 -104.83 -0.62 -2.84 16 11 C -0.02 -0.52 10.60 -16.96 -0.18 -0.70 16 12 N -0.47 -11.52 10.32 -12.27 -0.13 -11.65 16 13 C -0.02 -0.40 10.96 -16.72 -0.18 -0.58 16 14 C 0.06 1.54 5.59 -106.71 -0.60 0.94 16 15 C -0.45 -11.23 9.08 -37.73 -0.34 -11.57 16 16 H 0.08 2.02 7.90 -52.49 -0.41 1.60 16 17 C 0.07 1.75 5.18 -17.35 -0.09 1.66 16 18 N -0.79 -19.14 10.92 55.55 0.61 -18.54 16 19 Si 0.91 17.63 29.59 -169.99 -5.03 12.60 16 20 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 21 H -0.28 -5.25 7.11 56.52 0.40 -4.84 16 22 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 23 C -0.11 -2.84 8.16 -38.22 -0.31 -3.16 16 24 C -0.12 -2.03 9.42 -39.31 -0.37 -2.40 16 25 C -0.11 -1.59 9.41 -39.31 -0.37 -1.96 16 26 C -0.11 -1.33 9.43 -39.24 -0.37 -1.70 16 27 C -0.12 -1.21 9.68 -39.63 -0.38 -1.60 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 30 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 31 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.13 1.37 6.20 -52.49 -0.33 1.04 16 33 H 0.12 1.59 6.19 -52.48 -0.32 1.27 16 34 H 0.13 2.49 6.25 -52.48 -0.33 2.16 16 35 H 0.12 2.44 6.19 -52.49 -0.32 2.11 16 36 H 0.13 2.90 8.06 -52.49 -0.42 2.48 16 37 H 0.28 6.24 8.30 -40.82 -0.34 5.90 16 38 H 0.13 3.30 4.43 -52.49 -0.23 3.07 16 39 H 0.13 1.95 6.20 -52.49 -0.33 1.63 16 40 H 0.12 1.44 6.19 -52.48 -0.32 1.12 16 41 H 0.13 1.28 6.20 -52.49 -0.33 0.95 16 42 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 349.53 15.07 5.27 5.27 Total: -1.00 -27.84 349.53 -11.29 -39.12 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -4.59 Total: 10.33 kcal Atomic # 6 Polarization: -29.72 SS G_CDS: -7.41 Total: -37.13 kcal Atomic # 7 Polarization: -30.66 SS G_CDS: 0.48 Total: -30.18 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.84 -11.29 -39.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244297509.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.731 kcal (2) G-P(sol) polarization free energy of solvation -27.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds