Wall clock time and date at job start Tue Mar 31 2020 11:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38322 * 119.87272 * 2 1 4 4 C 1.38009 * 120.12610 * 179.72176 * 3 2 1 5 5 C 1.39380 * 119.87025 * 0.26187 * 4 3 2 6 6 C 1.48318 * 120.12307 * 180.02562 * 5 4 3 7 7 C 1.39446 * 120.00359 * 359.72610 * 6 5 4 8 8 C 1.37751 * 119.99719 * 179.76635 * 7 6 5 9 9 C 1.39439 * 120.00489 * 0.50316 * 8 7 6 10 10 C 1.48334 * 120.00046 * 179.72436 * 9 8 7 11 11 C 1.39748 * 120.41480 * 180.02562 * 10 9 8 12 12 N 1.31907 * 121.14550 * 180.02562 * 11 10 9 13 13 C 1.31528 * 122.12457 * 359.97438 * 12 11 10 14 14 C 1.40779 * 120.67588 * 0.02562 * 13 12 11 15 15 C 1.41432 * 120.60329 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99835 * 23.39583 * 15 14 13 17 17 C 1.39928 * 120.00178 * 203.39053 * 15 14 13 18 18 N 1.30828 * 120.00150 * 17.36499 * 17 15 14 19 19 Si 1.86804 * 120.00120 * 197.36101 * 17 15 14 20 20 H 1.48497 * 109.47249 * 94.69208 * 19 17 15 21 21 H 1.48504 * 109.46961 * 214.68858 * 19 17 15 22 22 H 1.48499 * 109.47180 * 334.68787 * 19 17 15 23 23 C 1.39181 * 120.41442 * 359.74314 * 10 9 8 24 24 C 1.39439 * 119.99858 * 359.74898 * 9 8 7 25 25 C 1.37752 * 120.00043 * 359.97438 * 24 9 8 26 26 C 1.39379 * 119.75111 * 359.97438 * 5 4 3 27 27 C 1.38008 * 119.87381 * 0.02562 * 26 5 4 28 28 H 1.08997 * 109.47663 * 89.99707 * 1 2 3 29 29 H 1.08998 * 109.47153 * 209.99748 * 1 2 3 30 30 H 1.09004 * 109.47415 * 329.99537 * 1 2 3 31 31 H 1.08002 * 119.94060 * 0.02562 * 3 2 1 32 32 H 1.07994 * 120.06746 * 180.23075 * 4 3 2 33 33 H 1.08004 * 119.99877 * 359.97438 * 7 6 5 34 34 H 1.08003 * 119.99797 * 180.27017 * 8 7 6 35 35 H 1.08002 * 119.42531 * 0.02562 * 11 10 9 36 36 H 1.07996 * 119.66230 * 179.97438 * 13 12 11 37 37 H 0.97004 * 120.00270 * 179.97438 * 18 17 15 38 38 H 1.08001 * 120.95636 * 0.02562 * 23 10 9 39 39 H 1.07994 * 119.99525 * 180.02562 * 24 9 8 40 40 H 1.08007 * 119.99745 * 179.97438 * 25 24 9 41 41 H 1.07999 * 120.06101 * 180.02562 * 26 5 4 42 42 H 1.07994 * 119.93578 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1994 0.0000 4 6 3.5760 1.2055 0.0058 5 6 4.2755 0.0000 0.0061 6 6 5.7587 0.0000 0.0129 7 6 6.4560 1.2076 0.0132 8 6 7.8334 1.2075 0.0244 9 6 8.5306 -0.0001 0.0248 10 6 10.0140 -0.0001 0.0306 11 6 10.7215 -1.2052 0.0306 12 7 12.0404 -1.2220 0.0362 13 6 12.7540 -0.1171 0.0417 14 6 12.1265 1.1431 0.0423 15 6 12.8952 2.3302 0.0487 16 1 13.9109 2.3178 -0.3183 17 6 12.3399 3.5208 0.5305 18 7 11.2651 3.4868 1.2756 19 14 13.1333 5.1588 0.1097 20 1 12.4678 5.7390 -1.0843 21 1 12.9877 6.0888 1.2583 22 1 14.5750 4.9509 -0.1792 23 6 10.7186 1.2002 0.0304 24 6 7.8334 -1.2076 0.0192 25 6 6.4559 -1.2076 0.0138 26 6 3.5760 -1.2055 0.0011 27 6 2.1959 -1.1995 -0.0046 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6529 2.1330 0.0004 32 1 4.1129 2.1425 0.0096 33 1 5.9160 2.1430 0.0081 34 1 8.3735 2.1428 0.0290 35 1 10.1789 -2.1390 0.0258 36 1 13.8322 -0.1773 0.0467 37 1 10.8804 4.3121 1.6099 38 1 10.2011 2.1482 0.0263 39 1 8.3735 -2.1429 0.0199 40 1 5.9160 -2.1430 0.0090 41 1 4.1130 -2.1426 0.0018 42 1 1.6529 -2.1330 -0.0081 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244297509.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:37 Heat of formation + Delta-G solvation = 48.106824 kcal Electronic energy + Delta-G solvation = -23589.806760 eV Core-core repulsion = 20269.593507 eV Total energy + Delta-G solvation = -3320.213253 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.02477 -40.25500 -39.08202 -36.01696 -34.99702 -32.91204 -32.57874 -32.19838 -31.43162 -29.99212 -27.60364 -27.11985 -24.82589 -24.28071 -23.51515 -22.42537 -22.01221 -21.26246 -19.30835 -18.37848 -17.46179 -17.22570 -16.82960 -16.46805 -16.12901 -15.93591 -15.15859 -15.02467 -14.89240 -14.72873 -14.66089 -14.49019 -14.19490 -14.01640 -13.84893 -13.58224 -13.32103 -13.15405 -12.99693 -12.83997 -12.79949 -12.59343 -12.30754 -12.09941 -11.95965 -11.69197 -11.46714 -11.22853 -10.98867 -10.08155 -9.91408 -9.88915 -9.84946 -9.55371 -8.76024 -8.47890 -6.48939 -0.46165 0.48972 0.51167 0.51713 0.92587 1.33937 1.37692 1.51634 1.52046 2.16181 2.59203 2.80260 3.16041 3.64154 3.71847 3.74583 3.85992 3.96006 4.08041 4.09389 4.19988 4.20717 4.35662 4.44934 4.54354 4.57464 4.62872 4.77742 4.81709 4.86046 4.89839 4.98049 5.00838 5.12784 5.14063 5.18945 5.24201 5.30568 5.36122 5.41224 5.55461 5.57959 5.70738 5.81409 5.85744 5.87917 5.99690 6.05256 6.12142 6.45401 6.71604 6.73502 7.64780 8.20683 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018201 B = 0.002781 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.973280 B =10066.339337 C =11521.467021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.095 4.095 3 C -0.127 4.127 4 C -0.122 4.122 5 C -0.064 4.064 6 C -0.058 4.058 7 C -0.111 4.111 8 C -0.122 4.122 9 C -0.040 4.040 10 C -0.091 4.091 11 C -0.034 4.034 12 N -0.479 5.479 13 C -0.041 4.041 14 C 0.035 3.965 15 C -0.479 4.479 16 H 0.087 0.913 17 C 0.036 3.964 18 N -0.816 5.816 19 Si 0.987 3.013 20 H -0.262 1.262 21 H -0.267 1.267 22 H -0.255 1.255 23 C -0.142 4.142 24 C -0.115 4.115 25 C -0.107 4.107 26 C -0.116 4.116 27 C -0.124 4.124 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.141 0.859 32 H 0.129 0.871 33 H 0.140 0.860 34 H 0.112 0.888 35 H 0.152 0.848 36 H 0.136 0.864 37 H 0.293 0.707 38 H 0.126 0.874 39 H 0.139 0.861 40 H 0.154 0.846 41 H 0.138 0.862 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.833 -2.373 -1.976 21.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.095 4.095 3 C -0.144 4.144 4 C -0.139 4.139 5 C -0.064 4.064 6 C -0.058 4.058 7 C -0.129 4.129 8 C -0.140 4.140 9 C -0.041 4.041 10 C -0.093 4.093 11 C -0.192 4.192 12 N -0.186 5.186 13 C -0.201 4.201 14 C 0.031 3.969 15 C -0.508 4.508 16 H 0.105 0.895 17 C -0.181 4.181 18 N -0.441 5.441 19 Si 0.807 3.193 20 H -0.186 1.186 21 H -0.191 1.191 22 H -0.179 1.179 23 C -0.167 4.167 24 C -0.133 4.133 25 C -0.124 4.124 26 C -0.134 4.134 27 C -0.142 4.142 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.158 0.842 32 H 0.147 0.853 33 H 0.158 0.842 34 H 0.130 0.870 35 H 0.169 0.831 36 H 0.153 0.847 37 H 0.104 0.896 38 H 0.143 0.857 39 H 0.157 0.843 40 H 0.171 0.829 41 H 0.156 0.844 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -20.566 -3.036 -1.823 20.869 hybrid contribution 0.572 1.670 0.050 1.766 sum -19.994 -1.367 -1.773 20.119 Atomic orbital electron populations 1.20846 0.89225 1.03721 1.03116 1.20380 0.97651 0.92956 0.98484 1.21236 0.93533 0.98818 1.00857 1.21450 0.94957 0.97616 0.99919 1.18878 0.90903 0.94571 1.02040 1.18985 0.92399 0.93324 1.01138 1.21258 0.92949 0.98528 1.00159 1.21250 0.94672 0.97552 1.00508 1.19036 0.91332 0.94398 0.99338 1.19785 0.92849 0.94818 1.01811 1.22304 0.89617 0.96485 1.10774 1.66955 1.08538 1.32492 1.10602 1.22720 0.98782 0.87926 1.10683 1.18834 0.93331 0.94490 0.90242 1.19850 1.00737 0.93045 1.37132 0.89498 1.26847 0.94934 1.04801 0.91474 1.69836 1.19580 1.31889 1.22813 0.85105 0.79737 0.75463 0.78976 1.18616 1.19125 1.17889 1.21913 0.94138 0.96993 1.03676 1.21326 0.94507 0.97303 1.00171 1.21364 0.93188 0.98333 0.99552 1.21477 0.94849 0.97543 0.99518 1.21270 0.93624 0.98729 1.00594 0.90299 0.90490 0.90760 0.84153 0.85345 0.84214 0.86973 0.83087 0.84664 0.89637 0.85671 0.84317 0.82870 0.84391 0.83694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.00 71.24 0.71 -0.44 16 2 C -0.09 -1.56 5.88 -19.82 -0.12 -1.68 16 3 C -0.13 -2.31 9.68 22.24 0.22 -2.09 16 4 C -0.12 -2.69 9.43 22.49 0.21 -2.48 16 5 C -0.06 -1.56 5.88 -20.04 -0.12 -1.68 16 6 C -0.06 -1.67 5.88 -20.01 -0.12 -1.79 16 7 C -0.11 -3.49 9.41 22.45 0.21 -3.28 16 8 C -0.12 -4.64 9.42 22.44 0.21 -4.43 16 9 C -0.04 -1.62 5.88 -20.01 -0.12 -1.74 16 10 C -0.09 -4.31 5.88 -20.00 -0.12 -4.43 16 11 C -0.03 -1.58 10.60 85.05 0.90 -0.68 16 12 N -0.48 -24.18 10.32 -192.74 -1.99 -26.17 16 13 C -0.04 -2.13 10.96 85.36 0.94 -1.20 16 14 C 0.04 1.92 5.59 -21.22 -0.12 1.80 16 15 C -0.48 -25.06 9.08 23.47 0.21 -24.84 16 16 H 0.09 4.33 7.90 -2.91 -0.02 4.31 16 17 C 0.04 1.74 5.18 85.25 0.44 2.18 16 18 N -0.82 -41.00 10.92 21.82 0.24 -40.76 16 19 Si 0.99 36.56 29.59 68.60 2.03 38.59 16 20 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 21 H -0.27 -9.41 7.11 99.48 0.71 -8.70 16 22 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 23 C -0.14 -7.45 8.16 23.15 0.19 -7.26 16 24 C -0.12 -3.80 9.42 22.44 0.21 -3.59 16 25 C -0.11 -2.97 9.41 22.45 0.21 -2.75 16 26 C -0.12 -2.37 9.43 22.49 0.21 -2.16 16 27 C -0.12 -2.11 9.68 22.24 0.22 -1.90 16 28 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.08 0.63 8.08 -2.39 -0.02 0.61 16 30 H 0.07 0.65 8.08 -2.39 -0.02 0.63 16 31 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 32 H 0.13 2.63 6.20 -2.91 -0.02 2.61 16 33 H 0.14 3.67 6.19 -2.91 -0.02 3.66 16 34 H 0.11 4.60 6.25 -2.91 -0.02 4.58 16 35 H 0.15 5.98 6.19 -2.91 -0.02 5.96 16 36 H 0.14 6.54 8.06 -2.91 -0.02 6.52 16 37 H 0.29 13.19 8.30 -92.70 -0.77 12.42 16 38 H 0.13 6.65 4.43 -2.91 -0.01 6.64 16 39 H 0.14 4.10 6.20 -2.91 -0.02 4.08 16 40 H 0.15 3.16 6.19 -2.91 -0.02 3.14 16 41 H 0.14 2.33 6.20 -2.91 -0.02 2.31 16 42 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -62.73 349.53 5.73 -57.00 By element: Atomic # 1 Polarization: 34.72 SS G_CDS: 1.06 Total: 35.78 kcal Atomic # 6 Polarization: -68.83 SS G_CDS: 4.39 Total: -64.44 kcal Atomic # 7 Polarization: -65.18 SS G_CDS: -1.75 Total: -66.93 kcal Atomic # 14 Polarization: 36.56 SS G_CDS: 2.03 Total: 38.59 kcal Total: -62.73 5.73 -57.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244297509.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.108 kcal (2) G-P(sol) polarization free energy of solvation -62.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds