Wall clock time and date at job start Tue Mar 31 2020 11:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38345 * 119.86840 * 2 1 4 4 C 1.37982 * 120.12934 * 180.02562 * 3 2 1 5 5 C 1.39442 * 119.87010 * 359.97438 * 4 3 2 6 6 C 1.48229 * 120.12991 * 179.97438 * 5 4 3 7 7 C 1.39581 * 119.96589 * 180.02562 * 6 5 4 8 8 C 1.37602 * 120.02755 * 180.02562 * 7 6 5 9 9 C 1.39828 * 119.96963 * 359.97438 * 8 7 6 10 10 C 1.47661 * 120.02994 * 179.97438 * 9 8 7 11 11 N 1.32651 * 119.99604 * 316.19293 * 10 9 8 12 12 C 1.31705 * 121.71002 * 179.97438 * 11 10 9 13 13 C 1.38911 * 121.51981 * 359.97411 * 12 11 10 14 14 C 1.36858 * 119.81296 * 0.02758 * 13 12 11 15 15 C 1.41148 * 118.39666 * 0.24740 * 14 13 12 16 16 C 1.40825 * 120.71931 * 179.72928 * 15 14 13 17 17 H 1.08004 * 119.99994 * 150.49907 * 16 15 14 18 18 C 1.40072 * 120.00234 * 330.49617 * 16 15 14 19 19 N 1.30771 * 120.00250 * 163.08018 * 18 16 15 20 20 Si 1.86799 * 119.99692 * 343.08418 * 18 16 15 21 21 H 1.48495 * 109.47373 * 90.34689 * 20 18 16 22 22 H 1.48509 * 109.46699 * 210.34412 * 20 18 16 23 23 H 1.48494 * 109.47544 * 330.34140 * 20 18 16 24 24 C 1.39825 * 119.94021 * 0.25109 * 9 8 7 25 25 C 1.37604 * 119.97058 * 359.49268 * 24 9 8 26 26 C 1.39438 * 119.73683 * 0.27638 * 5 4 3 27 27 C 1.37986 * 119.86945 * 359.44335 * 26 5 4 28 28 H 1.08999 * 109.47001 * 89.99704 * 1 2 3 29 29 H 1.08994 * 109.47096 * 210.00062 * 1 2 3 30 30 H 1.09007 * 109.46927 * 329.99814 * 1 2 3 31 31 H 1.07998 * 119.93779 * 0.02562 * 3 2 1 32 32 H 1.08004 * 120.06709 * 179.97438 * 4 3 2 33 33 H 1.07998 * 119.98792 * 0.03280 * 7 6 5 34 34 H 1.07999 * 120.01145 * 180.02562 * 8 7 6 35 35 H 1.07999 * 119.23894 * 180.02562 * 12 11 10 36 36 H 1.07998 * 120.09036 * 179.97438 * 13 12 11 37 37 H 1.07995 * 120.79841 * 179.97438 * 14 13 12 38 38 H 0.96995 * 120.00476 * 180.02562 * 19 18 16 39 39 H 1.07999 * 120.01487 * 179.74657 * 24 9 8 40 40 H 1.07998 * 119.98316 * 180.25082 * 25 24 9 41 41 H 1.08005 * 120.06070 * 179.69876 * 26 5 4 42 42 H 1.07993 * 119.93660 * 180.27404 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1997 0.0000 4 6 3.5758 1.2060 -0.0005 5 6 4.2758 0.0000 -0.0005 6 6 5.7581 0.0000 -0.0017 7 6 6.4553 -1.2092 -0.0022 8 6 7.8313 -1.2107 -0.0027 9 6 8.5311 -0.0001 -0.0033 10 6 10.0077 -0.0001 -0.0033 11 7 10.6709 -0.8288 0.7924 12 6 11.9873 -0.8576 0.8193 13 6 12.7486 -0.0202 0.0138 14 6 12.1283 0.8598 -0.8311 15 6 10.7173 0.8899 -0.8510 16 6 10.0287 1.7802 -1.6974 17 1 9.0524 1.5178 -2.0776 18 6 10.6098 3.0061 -2.0461 19 7 10.1500 3.6806 -3.0678 20 14 12.0416 3.6774 -1.0518 21 1 13.3190 3.1966 -1.6367 22 1 12.0115 5.1618 -1.0809 23 1 11.9324 3.2076 0.3527 24 6 7.8313 1.2105 0.0020 25 6 6.4553 1.2091 -0.0028 26 6 3.5758 -1.2060 -0.0058 27 6 2.1960 -1.1997 0.0006 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6528 2.1331 0.0004 32 1 4.1127 2.1431 -0.0010 33 1 5.9146 -2.1441 -0.0023 34 1 8.3705 -2.1464 -0.0036 35 1 12.4864 -1.5488 1.4823 36 1 13.8270 -0.0629 0.0548 37 1 12.7046 1.5184 -1.4639 38 1 10.5526 4.5293 -3.3095 39 1 8.3706 2.1462 0.0057 40 1 5.9147 2.1440 -0.0028 41 1 4.1127 -2.1431 -0.0108 42 1 1.6528 -2.1331 0.0010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244298002.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:06 Heat of formation + Delta-G solvation = 63.675050 kcal Electronic energy + Delta-G solvation = -24089.431479 eV Core-core repulsion = 20769.893314 eV Total energy + Delta-G solvation = -3319.538164 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.68839 -38.92647 -37.59942 -34.19837 -33.57107 -31.54885 -31.34987 -31.18430 -30.07783 -28.98265 -26.47575 -25.41193 -23.31950 -22.92736 -21.91804 -21.06293 -20.82739 -19.95736 -17.65348 -17.15883 -16.33329 -15.57968 -15.37094 -15.24029 -14.73618 -14.20254 -13.91094 -13.84087 -13.78243 -13.62131 -13.56013 -13.04398 -12.79132 -12.62864 -12.46092 -12.34460 -12.25587 -12.14615 -11.62073 -11.52220 -11.25006 -11.10873 -10.93245 -10.78880 -10.36132 -10.20501 -9.99893 -9.61882 -9.21561 -8.88225 -8.57133 -8.32664 -8.25637 -8.01428 -7.23939 -7.20049 -4.69575 0.92243 1.48732 1.96661 2.10238 2.43919 2.67687 2.92752 3.04328 3.13565 3.75294 3.85791 4.35474 4.55926 4.80414 4.81268 4.96716 5.05576 5.20182 5.25774 5.36818 5.45183 5.46318 5.55010 5.56803 5.67478 5.70711 5.90550 5.99366 6.05027 6.11576 6.14879 6.18911 6.22562 6.37802 6.45365 6.58406 6.61932 6.62587 6.70684 6.74714 6.86362 7.06248 7.15149 7.18586 7.22725 7.39100 7.48417 7.64333 7.69709 8.07696 8.30923 8.47943 9.29794 9.78477 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018630 B = 0.003289 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.564630 B = 8512.375055 C = 9714.842722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.102 4.102 3 C -0.118 4.118 4 C -0.114 4.114 5 C -0.027 4.027 6 C -0.076 4.076 7 C -0.114 4.114 8 C -0.108 4.108 9 C 0.026 3.974 10 C 0.028 3.972 11 N -0.440 5.440 12 C -0.041 4.041 13 C -0.119 4.119 14 C -0.211 4.211 15 C 0.062 3.938 16 C -0.420 4.420 17 H 0.104 0.896 18 C 0.083 3.917 19 N -0.786 5.786 20 Si 0.911 3.089 21 H -0.266 1.266 22 H -0.286 1.286 23 H -0.246 1.246 24 C -0.089 4.089 25 C -0.111 4.111 26 C -0.115 4.115 27 C -0.118 4.118 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.119 0.881 32 H 0.126 0.874 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.127 0.873 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.290 0.710 39 H 0.135 0.865 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.368 -3.089 4.055 12.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.102 4.102 3 C -0.136 4.136 4 C -0.131 4.131 5 C -0.027 4.027 6 C -0.076 4.076 7 C -0.132 4.132 8 C -0.127 4.127 9 C 0.026 3.974 10 C -0.112 4.112 11 N -0.148 5.148 12 C -0.200 4.200 13 C -0.139 4.139 14 C -0.236 4.236 15 C 0.057 3.943 16 C -0.447 4.447 17 H 0.122 0.878 18 C -0.139 4.139 19 N -0.408 5.408 20 Si 0.737 3.263 21 H -0.192 1.192 22 H -0.213 1.213 23 H -0.169 1.169 24 C -0.108 4.108 25 C -0.129 4.129 26 C -0.133 4.133 27 C -0.136 4.136 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.137 0.863 32 H 0.144 0.856 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.122 0.878 37 H 0.130 0.870 38 H 0.101 0.899 39 H 0.153 0.847 40 H 0.136 0.864 41 H 0.142 0.858 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.854 -3.427 4.391 13.098 hybrid contribution 1.377 0.978 -0.425 1.742 sum -10.478 -2.448 3.966 11.467 Atomic orbital electron populations 1.20759 0.91551 1.02441 1.02044 1.19910 0.95819 0.93296 1.01156 1.20925 0.94048 0.97359 1.01227 1.21291 0.93944 0.97838 1.00065 1.18908 0.92281 0.93111 0.98421 1.18666 0.90766 0.93751 1.04456 1.20952 0.94000 0.96635 1.01579 1.21141 0.93211 0.97813 1.00486 1.18491 0.91003 0.92505 0.95450 1.19486 0.91389 1.00992 0.99344 1.67091 1.09734 1.19051 1.18889 1.21696 0.89304 1.04188 1.04819 1.21374 0.99151 0.96654 0.96741 1.21217 0.94790 1.03501 1.04111 1.18434 0.91716 0.93069 0.91127 1.19559 1.05076 0.99377 1.20727 0.87785 1.26259 0.97199 0.96922 0.93567 1.69643 1.37678 1.13381 1.20073 0.86354 0.80455 0.76863 0.82646 1.19198 1.21315 1.16915 1.21367 0.93121 0.98675 0.97660 1.21022 0.94118 0.96683 1.01114 1.21249 0.93922 0.97704 1.00428 1.20906 0.94026 0.97318 1.01397 0.91446 0.91814 0.91787 0.86256 0.85608 0.86616 0.86231 0.85576 0.87761 0.86984 0.89884 0.84678 0.86394 0.85773 0.86320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 2 C -0.10 -1.14 5.89 -104.54 -0.62 -1.76 16 3 C -0.12 -1.40 9.68 -39.64 -0.38 -1.78 16 4 C -0.11 -1.55 9.43 -39.23 -0.37 -1.92 16 5 C -0.03 -0.41 5.88 -104.90 -0.62 -1.02 16 6 C -0.08 -1.29 5.88 -104.79 -0.62 -1.91 16 7 C -0.11 -1.93 9.41 -39.31 -0.37 -2.30 16 8 C -0.11 -2.08 9.64 -39.22 -0.38 -2.46 16 9 C 0.03 0.57 5.26 -104.86 -0.55 0.02 16 10 C 0.03 0.67 6.42 -82.25 -0.53 0.14 16 11 N -0.44 -10.22 10.15 -9.18 -0.09 -10.31 16 12 C -0.04 -0.88 11.16 -17.36 -0.19 -1.07 16 13 C -0.12 -2.49 10.03 -39.83 -0.40 -2.89 16 14 C -0.21 -4.87 7.31 -38.98 -0.29 -5.15 16 15 C 0.06 1.51 5.12 -106.40 -0.54 0.97 16 16 C -0.42 -10.48 7.21 -37.92 -0.27 -10.76 16 17 H 0.10 2.75 6.71 -52.48 -0.35 2.40 16 18 C 0.08 1.99 5.44 -17.32 -0.09 1.89 16 19 N -0.79 -19.25 13.92 55.55 0.77 -18.48 16 20 Si 0.91 19.34 24.53 -169.99 -4.17 15.16 16 21 H -0.27 -5.47 6.46 56.52 0.37 -5.10 16 22 H -0.29 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.25 -5.44 7.00 56.52 0.40 -5.04 16 24 C -0.09 -1.83 7.85 -39.22 -0.31 -2.14 16 25 C -0.11 -1.99 9.41 -39.32 -0.37 -2.36 16 26 C -0.12 -1.52 9.43 -39.23 -0.37 -1.89 16 27 C -0.12 -1.37 9.68 -39.63 -0.38 -1.76 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 30 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 31 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.13 1.59 6.19 -52.48 -0.33 1.27 16 33 H 0.12 1.63 6.19 -52.49 -0.32 1.31 16 34 H 0.12 2.25 8.06 -52.49 -0.42 1.82 16 35 H 0.13 2.29 8.06 -52.49 -0.42 1.86 16 36 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.11 2.52 4.54 -52.49 -0.24 2.28 16 38 H 0.29 6.42 8.29 -40.82 -0.34 6.09 16 39 H 0.14 2.88 6.75 -52.49 -0.35 2.52 16 40 H 0.12 1.83 6.19 -52.49 -0.32 1.50 16 41 H 0.12 1.47 6.19 -52.48 -0.33 1.14 16 42 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 344.94 15.07 5.20 5.20 Total: -1.00 -27.18 344.94 -10.38 -37.55 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -4.80 Total: 9.57 kcal Atomic # 6 Polarization: -31.41 SS G_CDS: -7.29 Total: -38.70 kcal Atomic # 7 Polarization: -29.47 SS G_CDS: 0.68 Total: -28.79 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.17 Total: 15.16 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.18 -10.38 -37.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244298002.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.229 kcal (2) G-P(sol) polarization free energy of solvation -27.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds