Wall clock time and date at job start Tue Mar 31 2020 11:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38345 * 119.86840 * 2 1 4 4 C 1.37982 * 120.12934 * 180.02562 * 3 2 1 5 5 C 1.39442 * 119.87010 * 359.97438 * 4 3 2 6 6 C 1.48229 * 120.12991 * 179.97438 * 5 4 3 7 7 C 1.39581 * 119.96589 * 180.02562 * 6 5 4 8 8 C 1.37602 * 120.02755 * 180.02562 * 7 6 5 9 9 C 1.39828 * 119.96963 * 359.97438 * 8 7 6 10 10 C 1.47661 * 120.02994 * 179.97438 * 9 8 7 11 11 N 1.32651 * 119.99604 * 316.19293 * 10 9 8 12 12 C 1.31705 * 121.71002 * 179.97438 * 11 10 9 13 13 C 1.38911 * 121.51981 * 359.97411 * 12 11 10 14 14 C 1.36858 * 119.81296 * 0.02758 * 13 12 11 15 15 C 1.41148 * 118.39666 * 0.24740 * 14 13 12 16 16 C 1.40825 * 120.71931 * 179.72928 * 15 14 13 17 17 H 1.08004 * 119.99994 * 150.49907 * 16 15 14 18 18 C 1.40072 * 120.00234 * 330.49617 * 16 15 14 19 19 N 1.30771 * 120.00250 * 163.08018 * 18 16 15 20 20 Si 1.86799 * 119.99692 * 343.08418 * 18 16 15 21 21 H 1.48495 * 109.47373 * 90.34689 * 20 18 16 22 22 H 1.48509 * 109.46699 * 210.34412 * 20 18 16 23 23 H 1.48494 * 109.47544 * 330.34140 * 20 18 16 24 24 C 1.39825 * 119.94021 * 0.25109 * 9 8 7 25 25 C 1.37604 * 119.97058 * 359.49268 * 24 9 8 26 26 C 1.39438 * 119.73683 * 0.27638 * 5 4 3 27 27 C 1.37986 * 119.86945 * 359.44335 * 26 5 4 28 28 H 1.08999 * 109.47001 * 89.99704 * 1 2 3 29 29 H 1.08994 * 109.47096 * 210.00062 * 1 2 3 30 30 H 1.09007 * 109.46927 * 329.99814 * 1 2 3 31 31 H 1.07998 * 119.93779 * 0.02562 * 3 2 1 32 32 H 1.08004 * 120.06709 * 179.97438 * 4 3 2 33 33 H 1.07998 * 119.98792 * 0.03280 * 7 6 5 34 34 H 1.07999 * 120.01145 * 180.02562 * 8 7 6 35 35 H 1.07999 * 119.23894 * 180.02562 * 12 11 10 36 36 H 1.07998 * 120.09036 * 179.97438 * 13 12 11 37 37 H 1.07995 * 120.79841 * 179.97438 * 14 13 12 38 38 H 0.96995 * 120.00476 * 180.02562 * 19 18 16 39 39 H 1.07999 * 120.01487 * 179.74657 * 24 9 8 40 40 H 1.07998 * 119.98316 * 180.25082 * 25 24 9 41 41 H 1.08005 * 120.06070 * 179.69876 * 26 5 4 42 42 H 1.07993 * 119.93660 * 180.27404 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1997 0.0000 4 6 3.5758 1.2060 -0.0005 5 6 4.2758 0.0000 -0.0005 6 6 5.7581 0.0000 -0.0017 7 6 6.4553 -1.2092 -0.0022 8 6 7.8313 -1.2107 -0.0027 9 6 8.5311 -0.0001 -0.0033 10 6 10.0077 -0.0001 -0.0033 11 7 10.6709 -0.8288 0.7924 12 6 11.9873 -0.8576 0.8193 13 6 12.7486 -0.0202 0.0138 14 6 12.1283 0.8598 -0.8311 15 6 10.7173 0.8899 -0.8510 16 6 10.0287 1.7802 -1.6974 17 1 9.0524 1.5178 -2.0776 18 6 10.6098 3.0061 -2.0461 19 7 10.1500 3.6806 -3.0678 20 14 12.0416 3.6774 -1.0518 21 1 13.3190 3.1966 -1.6367 22 1 12.0115 5.1618 -1.0809 23 1 11.9324 3.2076 0.3527 24 6 7.8313 1.2105 0.0020 25 6 6.4553 1.2091 -0.0028 26 6 3.5758 -1.2060 -0.0058 27 6 2.1960 -1.1997 0.0006 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6528 2.1331 0.0004 32 1 4.1127 2.1431 -0.0010 33 1 5.9146 -2.1441 -0.0023 34 1 8.3705 -2.1464 -0.0036 35 1 12.4864 -1.5488 1.4823 36 1 13.8270 -0.0629 0.0548 37 1 12.7046 1.5184 -1.4639 38 1 10.5526 4.5293 -3.3095 39 1 8.3706 2.1462 0.0057 40 1 5.9147 2.1440 -0.0028 41 1 4.1127 -2.1431 -0.0108 42 1 1.6528 -2.1331 0.0010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244298002.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:05 Heat of formation + Delta-G solvation = 52.323828 kcal Electronic energy + Delta-G solvation = -24089.923705 eV Core-core repulsion = 20769.893314 eV Total energy + Delta-G solvation = -3320.030390 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.02126 -40.35681 -38.97936 -35.98387 -34.76040 -33.30588 -32.72605 -32.35675 -31.36475 -30.34758 -27.84301 -26.87862 -24.65169 -24.24279 -23.48140 -22.43250 -22.17420 -21.28215 -19.47327 -18.53652 -17.80430 -17.15904 -16.70184 -16.41326 -16.17989 -15.67530 -15.29203 -15.15673 -15.10302 -14.73176 -14.64744 -14.54800 -14.31507 -13.96757 -13.87402 -13.80055 -13.67887 -13.25946 -12.97007 -12.79338 -12.64699 -12.59014 -12.19069 -12.07406 -11.94642 -11.71720 -11.47795 -11.38206 -10.58501 -10.23977 -10.00806 -9.84164 -9.78164 -9.59938 -9.00319 -8.62010 -6.54610 -0.32600 0.47282 0.52960 0.61456 0.72660 1.15876 1.20212 1.35434 1.42353 2.02597 2.56142 2.73292 3.17470 3.49561 3.68565 3.79283 3.83045 4.03241 4.09860 4.17543 4.22987 4.26096 4.36287 4.47748 4.53273 4.55832 4.60187 4.70233 4.74397 4.87871 4.92389 4.94073 4.99919 5.04017 5.14603 5.17375 5.26287 5.32965 5.42558 5.46286 5.52587 5.61090 5.69899 5.71821 5.87239 5.90527 5.92378 6.10518 6.15191 6.22370 6.53394 6.62940 7.54224 8.04416 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.018630 B = 0.003289 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.564630 B = 8512.375055 C = 9714.842722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.096 4.096 3 C -0.126 4.126 4 C -0.124 4.124 5 C -0.060 4.060 6 C -0.063 4.063 7 C -0.113 4.113 8 C -0.112 4.112 9 C -0.011 4.011 10 C 0.017 3.983 11 N -0.460 5.460 12 C -0.036 4.036 13 C -0.119 4.119 14 C -0.224 4.224 15 C 0.041 3.959 16 C -0.442 4.442 17 H 0.072 0.928 18 C 0.054 3.946 19 N -0.823 5.823 20 Si 0.959 3.041 21 H -0.250 1.250 22 H -0.272 1.272 23 H -0.262 1.262 24 C -0.101 4.101 25 C -0.120 4.120 26 C -0.118 4.118 27 C -0.123 4.123 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.141 0.859 32 H 0.126 0.874 33 H 0.149 0.851 34 H 0.121 0.879 35 H 0.164 0.836 36 H 0.147 0.853 37 H 0.117 0.883 38 H 0.299 0.701 39 H 0.114 0.886 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.612 -4.325 5.128 14.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.096 4.096 3 C -0.144 4.144 4 C -0.142 4.142 5 C -0.060 4.060 6 C -0.064 4.064 7 C -0.130 4.130 8 C -0.130 4.130 9 C -0.012 4.012 10 C -0.122 4.122 11 N -0.167 5.167 12 C -0.195 4.195 13 C -0.138 4.138 14 C -0.250 4.250 15 C 0.037 3.963 16 C -0.471 4.471 17 H 0.090 0.910 18 C -0.165 4.165 19 N -0.447 5.447 20 Si 0.782 3.218 21 H -0.175 1.175 22 H -0.198 1.198 23 H -0.187 1.187 24 C -0.120 4.120 25 C -0.137 4.137 26 C -0.136 4.136 27 C -0.141 4.141 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.159 0.841 32 H 0.144 0.856 33 H 0.166 0.834 34 H 0.139 0.861 35 H 0.181 0.819 36 H 0.164 0.836 37 H 0.134 0.866 38 H 0.110 0.890 39 H 0.132 0.868 40 H 0.153 0.847 41 H 0.154 0.846 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.108 -4.661 5.454 14.943 hybrid contribution 1.555 1.195 -0.656 2.068 sum -11.553 -3.467 4.797 12.981 Atomic orbital electron populations 1.20837 0.89063 1.03767 1.03087 1.20381 0.97701 0.92840 0.98670 1.21230 0.93394 0.98888 1.00844 1.21449 0.95040 0.97534 1.00127 1.18904 0.90911 0.94595 1.01635 1.18966 0.92379 0.93182 1.01834 1.21258 0.93140 0.98108 1.00543 1.21217 0.94302 0.96965 1.00564 1.18610 0.90547 0.93729 0.98327 1.19850 0.92630 1.00730 0.98980 1.67193 1.10863 1.19516 1.19136 1.22455 0.88928 1.03807 1.04280 1.21789 1.01370 0.95258 0.95407 1.21432 0.94274 1.04349 1.04918 1.18648 0.92798 0.93476 0.91417 1.19353 1.04341 1.00813 1.22548 0.91001 1.26793 0.98997 0.96610 0.94055 1.69657 1.39366 1.14335 1.21363 0.85629 0.78750 0.77056 0.80353 1.17508 1.19823 1.18675 1.21252 0.94215 0.97655 0.98895 1.21218 0.93202 0.98254 1.01058 1.21465 0.94915 0.97411 0.99801 1.21263 0.93481 0.98777 1.00593 0.90376 0.90387 0.90691 0.84096 0.85632 0.83374 0.86057 0.81930 0.83575 0.86570 0.89011 0.86835 0.84693 0.84641 0.83581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 10.01 71.24 0.71 -0.67 16 2 C -0.10 -1.86 5.89 -19.81 -0.12 -1.97 16 3 C -0.13 -2.72 9.68 22.23 0.22 -2.50 16 4 C -0.12 -3.27 9.43 22.50 0.21 -3.06 16 5 C -0.06 -1.76 5.88 -20.04 -0.12 -1.88 16 6 C -0.06 -2.17 5.88 -19.97 -0.12 -2.29 16 7 C -0.11 -3.82 9.41 22.44 0.21 -3.61 16 8 C -0.11 -4.44 9.64 22.50 0.22 -4.23 16 9 C -0.01 -0.52 5.26 -20.02 -0.11 -0.62 16 10 C 0.02 0.85 6.42 42.42 0.27 1.12 16 11 N -0.46 -21.34 10.15 -182.97 -1.86 -23.20 16 12 C -0.04 -1.45 11.16 84.87 0.95 -0.50 16 13 C -0.12 -4.73 10.03 22.11 0.22 -4.50 16 14 C -0.22 -10.33 7.31 22.66 0.17 -10.16 16 15 C 0.04 2.11 5.12 -21.02 -0.11 2.00 16 16 C -0.44 -23.55 7.21 23.35 0.17 -23.38 16 17 H 0.07 4.17 6.71 -2.91 -0.02 4.15 16 18 C 0.05 2.70 5.44 85.30 0.46 3.16 16 19 N -0.82 -42.21 13.92 21.85 0.30 -41.90 16 20 Si 0.96 40.39 24.53 68.60 1.68 42.07 16 21 H -0.25 -9.79 6.46 99.48 0.64 -9.15 16 22 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 23 H -0.26 -11.65 7.00 99.48 0.70 -10.95 16 24 C -0.10 -4.45 7.85 22.50 0.18 -4.27 16 25 C -0.12 -4.48 9.41 22.44 0.21 -4.27 16 26 C -0.12 -2.88 9.43 22.50 0.21 -2.67 16 27 C -0.12 -2.48 9.68 22.24 0.22 -2.26 16 28 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 30 H 0.07 0.80 8.08 -2.38 -0.02 0.78 16 31 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 32 H 0.13 3.19 6.19 -2.91 -0.02 3.17 16 33 H 0.15 3.93 6.19 -2.91 -0.02 3.91 16 34 H 0.12 4.66 8.06 -2.91 -0.02 4.63 16 35 H 0.16 5.32 8.06 -2.91 -0.02 5.30 16 36 H 0.15 4.54 8.06 -2.91 -0.02 4.51 16 37 H 0.12 5.16 4.54 -2.91 -0.01 5.15 16 38 H 0.30 13.69 8.29 -92.71 -0.77 12.92 16 39 H 0.11 5.35 6.75 -2.91 -0.02 5.33 16 40 H 0.14 4.41 6.19 -2.91 -0.02 4.39 16 41 H 0.14 2.87 6.19 -2.91 -0.02 2.85 16 42 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -61.74 344.94 5.17 -56.57 By element: Atomic # 1 Polarization: 32.04 SS G_CDS: 0.98 Total: 33.01 kcal Atomic # 6 Polarization: -70.61 SS G_CDS: 4.06 Total: -66.56 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: -1.55 Total: -65.10 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 1.68 Total: 42.07 kcal Total: -61.74 5.17 -56.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244298002.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.899 kcal (2) G-P(sol) polarization free energy of solvation -61.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds