Wall clock time and date at job start Tue Mar 31 2020 11:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38335 * 119.87021 * 2 1 4 4 C 1.37985 * 120.13215 * 179.97438 * 3 2 1 5 5 C 1.39428 * 119.87015 * 359.97438 * 4 3 2 6 6 C 1.48239 * 120.13516 * 180.02562 * 5 4 3 7 7 C 1.39556 * 119.97832 * 179.97438 * 6 5 4 8 8 C 1.37624 * 120.02426 * 180.02562 * 7 6 5 9 9 C 1.39765 * 119.97213 * 359.97438 * 8 7 6 10 10 C 1.47820 * 120.02249 * 180.02562 * 9 8 7 11 11 C 1.39971 * 119.45719 * 179.97438 * 10 9 8 12 12 C 1.36560 * 119.46488 * 179.97438 * 11 10 9 13 13 C 1.41334 * 118.42015 * 0.26064 * 12 11 10 14 14 C 1.40998 * 120.55015 * 179.74715 * 13 12 11 15 15 H 1.07997 * 119.99742 * 203.70368 * 14 13 12 16 16 C 1.40023 * 120.00074 * 23.70387 * 14 13 12 17 17 N 1.30793 * 120.00038 * 17.63835 * 16 14 13 18 18 Si 1.86800 * 120.00107 * 197.64171 * 16 14 13 19 19 H 1.48503 * 109.46900 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47471 * 119.99833 * 18 16 14 21 21 H 1.48497 * 109.47103 * 240.00242 * 18 16 14 22 22 C 1.40984 * 118.89798 * 359.51828 * 13 12 11 23 23 N 1.31229 * 120.40628 * 0.48851 * 22 13 12 24 24 C 1.39759 * 119.95351 * 0.27417 * 9 8 7 25 25 C 1.37613 * 119.97751 * 359.46892 * 24 9 8 26 26 C 1.39437 * 119.73972 * 0.27309 * 5 4 3 27 27 C 1.37989 * 119.86629 * 359.47362 * 26 5 4 28 28 H 1.09002 * 109.46854 * 90.00552 * 1 2 3 29 29 H 1.09000 * 109.46904 * 209.99872 * 1 2 3 30 30 H 1.08992 * 109.47193 * 330.00767 * 1 2 3 31 31 H 1.08006 * 119.93152 * 359.97355 * 3 2 1 32 32 H 1.08003 * 120.06912 * 179.97438 * 4 3 2 33 33 H 1.07994 * 119.99206 * 0.02685 * 7 6 5 34 34 H 1.07995 * 120.01629 * 180.02562 * 8 7 6 35 35 H 1.07995 * 120.26761 * 0.02575 * 11 10 9 36 36 H 1.07996 * 120.79088 * 179.97438 * 12 11 10 37 37 H 0.97001 * 119.99998 * 179.97438 * 17 16 14 38 38 H 1.08002 * 119.79548 * 180.22889 * 22 13 12 39 39 H 1.08007 * 120.00914 * 179.70145 * 24 9 8 40 40 H 1.07997 * 119.99136 * 180.22803 * 25 24 9 41 41 H 1.08000 * 120.06749 * 179.72647 * 26 5 4 42 42 H 1.08000 * 119.93782 * 180.23270 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1960 1.1996 0.0000 4 6 3.5758 1.2059 0.0005 5 6 4.2758 0.0000 0.0016 6 6 5.7582 -0.0001 0.0028 7 6 6.4554 -1.2090 0.0044 8 6 7.8316 -1.2101 0.0060 9 6 8.5309 0.0000 0.0055 10 6 10.0091 0.0000 0.0066 11 6 10.6974 1.2188 0.0055 12 6 12.0630 1.2190 0.0071 13 6 12.7359 -0.0239 0.0042 14 6 14.1449 -0.0760 0.0003 15 1 14.6518 -0.9515 -0.3779 16 6 14.8870 1.0072 0.4867 17 7 14.3140 1.9032 1.2480 18 14 16.6952 1.1727 0.0483 19 1 17.1003 0.0371 -0.8187 20 1 16.9143 2.4510 -0.6749 21 1 17.5088 1.1610 1.2906 22 6 11.9748 -1.2106 0.0101 23 7 10.6636 -1.1588 0.0086 24 6 7.8316 1.2100 0.0091 25 6 6.4555 1.2089 0.0021 26 6 3.5759 -1.2060 -0.0036 27 6 2.1960 -1.1997 0.0012 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.6527 2.1331 -0.0004 32 1 4.1127 2.1430 0.0001 33 1 5.9149 -2.1439 0.0044 34 1 8.3711 -2.1457 0.0068 35 1 10.1529 2.1515 0.0042 36 1 12.6157 2.1469 0.0059 37 1 14.8281 2.6534 1.5853 38 1 12.4741 -2.1683 0.0117 39 1 8.3711 2.1457 0.0135 40 1 5.9149 2.1439 0.0012 41 1 4.1127 -2.1431 -0.0073 42 1 1.6528 -2.1331 0.0009 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244299829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:10 Heat of formation + Delta-G solvation = 48.425617 kcal Electronic energy + Delta-G solvation = -23201.667351 eV Core-core repulsion = 19881.467922 eV Total energy + Delta-G solvation = -3320.199430 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.93730 -40.25043 -39.00147 -36.16325 -34.60063 -32.84265 -32.56700 -32.24292 -31.32475 -30.56941 -28.04020 -26.48535 -24.72929 -24.15163 -23.48127 -22.52903 -21.94455 -21.28273 -19.38747 -18.50696 -17.45348 -17.21596 -16.71985 -16.38167 -16.03383 -15.68193 -15.17381 -14.98545 -14.87794 -14.73766 -14.64731 -14.54265 -14.27173 -13.90699 -13.76579 -13.57957 -13.48871 -13.21492 -12.96851 -12.89211 -12.70015 -12.42861 -12.21562 -12.17909 -11.87685 -11.72654 -11.45561 -11.30691 -10.59599 -10.28856 -9.99759 -9.85329 -9.82084 -9.54881 -8.84514 -8.54582 -6.45566 -0.37381 0.53546 0.53915 0.58192 1.00351 1.20409 1.38113 1.53767 1.57108 2.13921 2.54678 2.84489 3.20939 3.68974 3.73538 3.74798 3.85245 4.00864 4.10354 4.14672 4.23254 4.31536 4.38280 4.50754 4.58328 4.62913 4.72302 4.76179 4.87562 4.92248 4.93865 4.97235 5.04418 5.10934 5.15216 5.24260 5.27268 5.31318 5.39401 5.42564 5.59751 5.71285 5.73538 5.77680 5.86768 5.90920 6.02002 6.11317 6.17093 6.41316 6.62950 6.70453 7.64059 8.11629 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.047735 B = 0.002088 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.427598 B =13404.044230 C =13910.958561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.098 4.098 3 C -0.125 4.125 4 C -0.120 4.120 5 C -0.060 4.060 6 C -0.073 4.073 7 C -0.108 4.108 8 C -0.121 4.121 9 C -0.011 4.011 10 C -0.017 4.017 11 C -0.126 4.126 12 C -0.163 4.163 13 C 0.040 3.960 14 C -0.460 4.460 15 H 0.092 0.908 16 C 0.033 3.967 17 N -0.805 5.805 18 Si 0.992 3.008 19 H -0.254 1.254 20 H -0.262 1.262 21 H -0.263 1.263 22 C -0.037 4.037 23 N -0.460 5.460 24 C -0.133 4.133 25 C -0.103 4.103 26 C -0.123 4.123 27 C -0.125 4.125 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.143 0.857 32 H 0.135 0.865 33 H 0.142 0.858 34 H 0.118 0.882 35 H 0.127 0.873 36 H 0.120 0.880 37 H 0.297 0.703 38 H 0.140 0.860 39 H 0.131 0.869 40 H 0.148 0.852 41 H 0.131 0.869 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.676 0.891 -1.840 19.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.098 4.098 3 C -0.142 4.142 4 C -0.138 4.138 5 C -0.060 4.060 6 C -0.074 4.074 7 C -0.125 4.125 8 C -0.140 4.140 9 C -0.012 4.012 10 C -0.151 4.151 11 C -0.146 4.146 12 C -0.188 4.188 13 C 0.036 3.964 14 C -0.488 4.488 15 H 0.110 0.890 16 C -0.185 4.185 17 N -0.429 5.429 18 Si 0.812 3.188 19 H -0.177 1.177 20 H -0.186 1.186 21 H -0.188 1.188 22 C -0.201 4.201 23 N -0.167 5.167 24 C -0.152 4.152 25 C -0.121 4.121 26 C -0.140 4.140 27 C -0.143 4.143 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.161 0.839 32 H 0.153 0.847 33 H 0.159 0.841 34 H 0.136 0.864 35 H 0.145 0.855 36 H 0.138 0.862 37 H 0.108 0.892 38 H 0.157 0.843 39 H 0.149 0.851 40 H 0.166 0.834 41 H 0.149 0.851 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -20.120 0.348 -1.685 20.193 hybrid contribution 1.862 0.807 0.043 2.029 sum -18.258 1.155 -1.641 18.368 Atomic orbital electron populations 1.20837 0.89257 1.03678 1.03065 1.20373 0.97617 0.92961 0.98815 1.21247 0.93606 0.98716 1.00659 1.21462 0.94851 0.97561 0.99943 1.18900 0.91019 0.94505 1.01543 1.18960 0.92285 0.93355 1.02758 1.21278 0.93099 0.98305 0.99837 1.21188 0.94162 0.97658 1.01029 1.18842 0.90292 0.94295 0.97779 1.19357 0.92646 0.88847 1.14260 1.21590 0.94891 0.98065 1.00061 1.21376 0.93396 0.98539 1.05481 1.18951 0.95360 0.92679 0.89431 1.19982 0.91190 1.02944 1.34729 0.88972 1.26997 1.06511 0.93451 0.91518 1.69821 1.41207 1.10491 1.21384 0.84994 0.74639 0.79809 0.79395 1.17673 1.18627 1.18791 1.22681 0.88845 0.97507 1.11115 1.66970 1.10712 1.29506 1.09520 1.21257 0.94531 0.97111 1.02301 1.21268 0.93067 0.98255 0.99502 1.21458 0.94897 0.97595 1.00083 1.21238 0.93558 0.98748 1.00740 0.90361 0.90697 0.90617 0.83909 0.84744 0.84074 0.86390 0.85502 0.86248 0.89187 0.84275 0.85143 0.83411 0.85124 0.84058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 71.24 0.71 -0.46 16 2 C -0.10 -1.64 5.89 -19.81 -0.12 -1.75 16 3 C -0.12 -2.20 9.68 22.23 0.22 -1.99 16 4 C -0.12 -2.57 9.43 22.50 0.21 -2.35 16 5 C -0.06 -1.49 5.88 -20.04 -0.12 -1.61 16 6 C -0.07 -2.14 5.88 -19.98 -0.12 -2.26 16 7 C -0.11 -3.34 9.41 22.44 0.21 -3.13 16 8 C -0.12 -4.60 9.56 22.49 0.21 -4.38 16 9 C -0.01 -0.46 5.88 -20.00 -0.12 -0.58 16 10 C -0.02 -0.80 6.74 41.91 0.28 -0.52 16 11 C -0.13 -6.01 9.38 22.30 0.21 -5.81 16 12 C -0.16 -8.45 8.74 22.64 0.20 -8.25 16 13 C 0.04 2.16 5.59 -21.17 -0.12 2.04 16 14 C -0.46 -23.35 9.06 23.38 0.21 -23.14 16 15 H 0.09 4.41 7.91 -2.91 -0.02 4.39 16 16 C 0.03 1.56 5.17 85.28 0.44 2.00 16 17 N -0.81 -39.32 10.92 21.84 0.24 -39.08 16 18 Si 0.99 34.99 29.60 68.60 2.03 37.02 16 19 H -0.25 -8.73 7.11 99.48 0.71 -8.03 16 20 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 21 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 22 C -0.04 -1.91 10.97 85.46 0.94 -0.98 16 23 N -0.46 -23.34 9.37 -182.74 -1.71 -25.06 16 24 C -0.13 -4.62 9.40 22.49 0.21 -4.40 16 25 C -0.10 -3.02 9.41 22.44 0.21 -2.81 16 26 C -0.12 -2.70 9.43 22.50 0.21 -2.48 16 27 C -0.13 -2.27 9.68 22.24 0.22 -2.05 16 28 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.65 8.08 -2.39 -0.02 0.63 16 30 H 0.07 0.65 8.08 -2.39 -0.02 0.63 16 31 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 32 H 0.13 2.46 6.19 -2.91 -0.02 2.45 16 33 H 0.14 3.57 6.19 -2.91 -0.02 3.55 16 34 H 0.12 4.65 7.51 -2.91 -0.02 4.63 16 35 H 0.13 5.20 6.14 -2.91 -0.02 5.18 16 36 H 0.12 6.25 6.19 -2.91 -0.02 6.23 16 37 H 0.30 12.85 8.30 -92.71 -0.77 12.08 16 38 H 0.14 6.59 8.06 -2.91 -0.02 6.56 16 39 H 0.13 4.19 6.13 -2.91 -0.02 4.17 16 40 H 0.15 3.34 6.19 -2.91 -0.02 3.32 16 41 H 0.13 2.59 6.19 -2.91 -0.02 2.57 16 42 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -61.44 351.80 5.72 -55.72 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: 1.05 Total: 36.31 kcal Atomic # 6 Polarization: -69.02 SS G_CDS: 4.11 Total: -64.92 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: -1.47 Total: -64.14 kcal Atomic # 14 Polarization: 34.99 SS G_CDS: 2.03 Total: 37.02 kcal Total: -61.44 5.72 -55.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244299829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.147 kcal (2) G-P(sol) polarization free energy of solvation -61.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds