Wall clock time and date at job start Tue Mar 31 2020 11:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38251 * 119.91066 * 2 1 4 4 C 1.38031 * 120.18488 * 180.27846 * 3 2 1 5 5 C 1.39388 * 119.98330 * 359.74217 * 4 3 2 6 6 C 1.48383 * 120.08756 * 180.02562 * 5 4 3 7 7 C 1.39003 * 120.42179 * 309.70383 * 6 5 4 8 8 C 1.40960 * 118.12662 * 179.72704 * 7 6 5 9 9 C 1.41381 * 120.57273 * 180.25760 * 8 7 6 10 10 H 1.07997 * 120.00123 * 156.14698 * 9 8 7 11 11 C 1.39901 * 119.99933 * 336.15342 * 9 8 7 12 12 N 1.30853 * 120.00101 * 343.91890 * 11 9 8 13 13 Si 1.86804 * 119.99852 * 163.92580 * 11 9 8 14 14 H 1.48498 * 109.47012 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47131 * 120.00045 * 13 11 9 16 16 H 1.48504 * 109.46705 * 239.99610 * 13 11 9 17 17 C 1.40797 * 118.85612 * 0.56773 * 8 7 6 18 18 N 1.31500 * 120.69194 * 359.68822 * 17 8 7 19 19 C 1.32169 * 122.08075 * 0.02579 * 18 17 8 20 20 F 1.35094 * 119.45729 * 179.97438 * 19 18 17 21 21 C 1.39241 * 119.81574 * 0.02562 * 5 4 3 22 22 C 1.38537 * 119.81675 * 359.97438 * 21 5 4 23 23 O 1.35906 * 119.99539 * 179.97438 * 22 21 5 24 24 C 1.42905 * 116.99688 * 5.38915 * 23 22 21 25 25 C 1.53002 * 109.47263 * 274.18094 * 24 23 22 26 26 C 1.53002 * 109.46877 * 154.17960 * 24 23 22 27 27 H 1.08994 * 109.47124 * 270.23572 * 1 2 3 28 28 H 1.09006 * 109.47262 * 30.23388 * 1 2 3 29 29 H 1.08995 * 109.47578 * 150.22887 * 1 2 3 30 30 H 1.08006 * 119.90673 * 359.97438 * 3 2 1 31 31 H 1.07992 * 120.00653 * 179.76590 * 4 3 2 32 32 H 1.08000 * 120.93655 * 359.97438 * 7 6 5 33 33 H 0.97001 * 120.00490 * 180.02562 * 12 11 9 34 34 H 1.07999 * 119.65551 * 179.71638 * 17 8 7 35 35 H 1.07991 * 120.08911 * 179.97438 * 21 5 4 36 36 H 1.08995 * 109.47075 * 34.18099 * 24 23 22 37 37 H 1.08992 * 109.47274 * 180.02562 * 25 24 23 38 38 H 1.08996 * 109.46793 * 59.99682 * 25 24 23 39 39 H 1.08999 * 109.46790 * 300.00405 * 25 24 23 40 40 H 1.09002 * 109.46846 * 179.97438 * 26 24 23 41 41 H 1.08994 * 109.47335 * 300.00078 * 26 24 23 42 42 H 1.09003 * 109.47037 * 60.00473 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1963 1.1984 0.0000 4 6 3.5766 1.2050 -0.0058 5 6 4.2790 0.0010 -0.0062 6 6 5.7628 0.0054 -0.0119 7 6 6.4608 0.7715 -0.9382 8 6 7.8696 0.7443 -0.8963 9 6 8.6311 1.5079 -1.8105 10 1 9.6411 1.7984 -1.5617 11 6 8.0762 1.8874 -3.0374 12 7 6.9983 1.2921 -3.4801 13 14 8.8743 3.2438 -4.0438 14 1 10.0719 3.7520 -3.3279 15 1 9.2794 2.7053 -5.3671 16 1 7.9054 4.3527 -4.2363 17 6 8.5052 -0.0616 0.0675 18 7 7.7993 -0.7728 0.9190 19 6 6.4776 -0.7669 0.9123 20 9 5.8053 -1.5185 1.8113 21 6 3.5843 -1.2058 -0.0014 22 6 2.1990 -1.2031 0.0044 23 8 1.5173 -2.3789 0.0087 24 6 2.2891 -3.5758 0.1265 25 6 2.7636 -4.0152 -1.2602 26 6 1.4278 -4.6792 0.7442 27 1 -0.3633 0.0042 1.0276 28 1 -0.3634 0.8879 -0.5175 29 1 -0.3634 -0.8920 -0.5102 30 1 1.6533 2.1320 -0.0004 31 1 4.1122 2.1427 -0.0096 32 1 5.9386 1.3738 -1.6668 33 1 6.6137 1.5549 -4.3310 34 1 9.5839 -0.0957 0.1081 35 1 4.1240 -2.1411 -0.0021 36 1 3.1533 -3.3896 0.7640 37 1 3.3519 -4.9283 -1.1704 38 1 3.3771 -3.2290 -1.7002 39 1 1.8994 -4.2013 -1.8978 40 1 2.0164 -5.5923 0.8336 41 1 1.0898 -4.3662 1.7320 42 1 0.5636 -4.8655 0.1065 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244446075.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:40 Heat of formation + Delta-G solvation = -49.984334 kcal Electronic energy + Delta-G solvation = -26001.760175 eV Core-core repulsion = 22246.524145 eV Total energy + Delta-G solvation = -3755.236030 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -47.60956 -40.11849 -38.46638 -37.32919 -34.24192 -33.71614 -32.56495 -30.61972 -29.82908 -29.61817 -27.26364 -26.01770 -25.56535 -23.21834 -22.51995 -21.60118 -20.48876 -20.46312 -17.97186 -17.09900 -16.65939 -16.10891 -15.62437 -15.34752 -15.28859 -14.98802 -14.65602 -14.37714 -13.97169 -13.55007 -13.48999 -13.06555 -12.88152 -12.49979 -12.46772 -12.34601 -12.30034 -12.14555 -12.05836 -11.96270 -11.80671 -11.57468 -11.34398 -11.27072 -11.13236 -10.92715 -10.76329 -10.60879 -10.46426 -10.06439 -9.54853 -8.84010 -8.46961 -8.12895 -7.84851 -7.41040 -7.04561 -4.67071 1.49772 1.82791 2.38664 2.66958 2.93467 2.97106 2.99791 3.37563 3.71725 4.11502 4.34825 4.80540 4.92475 5.01094 5.11524 5.13881 5.17405 5.30806 5.38954 5.48020 5.51307 5.58132 5.68923 5.75285 5.81491 5.84523 5.91715 5.93716 6.04086 6.07918 6.13684 6.21008 6.44893 6.47464 6.59097 6.68179 6.81395 6.87054 6.93847 7.08125 7.15330 7.42651 7.59805 7.70156 7.74099 8.17627 8.43445 8.44669 9.17668 9.86293 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014264 B = 0.004123 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.484844 B = 6789.251287 C = 7515.665865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.132 4.132 3 C -0.086 4.086 4 C -0.139 4.139 5 C 0.021 3.979 6 C -0.104 4.104 7 C -0.095 4.095 8 C 0.054 3.946 9 C -0.439 4.439 10 H 0.089 0.911 11 C 0.072 3.928 12 N -0.784 5.784 13 Si 0.916 3.084 14 H -0.257 1.257 15 H -0.272 1.272 16 H -0.269 1.269 17 C 0.010 3.990 18 N -0.489 5.489 19 C 0.163 3.837 20 F -0.146 7.146 21 C -0.186 4.186 22 C 0.127 3.873 23 O -0.311 6.311 24 C 0.074 3.926 25 C -0.179 4.179 26 C -0.145 4.145 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.142 0.858 33 H 0.287 0.713 34 H 0.139 0.861 35 H 0.128 0.872 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.143 -2.980 1.477 10.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.133 4.133 3 C -0.104 4.104 4 C -0.158 4.158 5 C 0.020 3.980 6 C -0.108 4.108 7 C -0.120 4.120 8 C 0.049 3.951 9 C -0.468 4.468 10 H 0.107 0.893 11 C -0.148 4.148 12 N -0.408 5.408 13 Si 0.739 3.261 14 H -0.181 1.181 15 H -0.197 1.197 16 H -0.194 1.194 17 C -0.151 4.151 18 N -0.201 5.201 19 C 0.009 3.991 20 F -0.126 7.126 21 C -0.205 4.205 22 C 0.082 3.918 23 O -0.225 6.225 24 C 0.018 3.982 25 C -0.237 4.237 26 C -0.202 4.202 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.159 0.841 33 H 0.098 0.902 34 H 0.156 0.844 35 H 0.146 0.854 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.133 -3.585 1.897 10.915 hybrid contribution 0.164 0.798 -1.053 1.331 sum -9.969 -2.787 0.844 10.386 Atomic orbital electron populations 1.20520 0.91072 1.02186 1.01650 1.19142 0.95992 0.90365 1.07804 1.20707 0.93797 0.96463 0.99437 1.21115 0.93662 0.97580 1.03414 1.18533 0.92041 0.92360 0.95065 1.19170 0.91258 1.01656 0.98682 1.21782 0.93932 0.98871 0.97400 1.18508 0.92414 0.91359 0.92816 1.19612 1.00832 1.27340 0.98987 0.89315 1.26028 0.94523 0.96092 0.98116 1.69770 1.18035 1.33962 1.18997 0.86121 0.80310 0.80354 0.79300 1.18053 1.19675 1.19418 1.22304 0.97887 0.98150 0.96779 1.66274 1.06258 1.22034 1.25529 1.17513 0.86855 1.00548 0.94210 1.91392 1.78731 1.75488 1.66972 1.21294 0.92476 0.98950 1.07781 1.18609 0.90051 0.85411 0.97706 1.86039 1.36006 1.12220 1.88281 1.22418 0.94874 0.83586 0.97352 1.22364 1.02046 1.02384 0.96891 1.21828 1.00327 0.96834 1.01239 0.92003 0.92153 0.91580 0.85754 0.85844 0.84054 0.90191 0.84391 0.85379 0.90553 0.91166 0.91499 0.91716 0.90702 0.91802 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 9.78 36.00 0.35 -0.87 16 2 C -0.13 -2.10 5.90 -104.41 -0.62 -2.71 16 3 C -0.09 -1.35 9.68 -39.65 -0.38 -1.74 16 4 C -0.14 -2.56 9.53 -39.23 -0.37 -2.93 16 5 C 0.02 0.43 5.32 -104.92 -0.56 -0.13 16 6 C -0.10 -2.43 5.48 -104.75 -0.57 -3.01 16 7 C -0.09 -2.31 8.29 -38.27 -0.32 -2.62 16 8 C 0.05 1.33 5.59 -106.70 -0.60 0.73 16 9 C -0.44 -10.47 9.08 -37.76 -0.34 -10.81 16 10 H 0.09 1.99 7.89 -52.49 -0.41 1.58 16 11 C 0.07 1.64 5.20 -17.35 -0.09 1.54 16 12 N -0.78 -18.52 10.85 55.54 0.60 -17.91 16 13 Si 0.92 16.92 29.59 -169.99 -5.03 11.89 16 14 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 15 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 16 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 17 C 0.01 0.24 10.96 -16.73 -0.18 0.06 16 18 N -0.49 -12.21 10.33 -12.59 -0.13 -12.34 16 19 C 0.16 3.98 8.30 -16.72 -0.14 3.84 16 20 F -0.15 -3.41 15.91 2.25 0.04 -3.38 16 21 C -0.19 -3.57 7.10 -39.10 -0.28 -3.85 16 22 C 0.13 2.19 6.58 -39.26 -0.26 1.93 16 23 O -0.31 -4.81 8.83 -19.45 -0.17 -4.98 16 24 C 0.07 0.99 2.84 -26.73 -0.08 0.91 16 25 C -0.18 -2.28 9.20 37.16 0.34 -1.94 16 26 C -0.15 -1.49 9.56 37.16 0.36 -1.13 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 29 H 0.07 0.83 7.52 -51.93 -0.39 0.44 16 30 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 31 H 0.12 2.18 8.05 -52.49 -0.42 1.75 16 32 H 0.14 3.49 6.15 -52.49 -0.32 3.17 16 33 H 0.29 6.15 8.30 -40.82 -0.34 5.81 16 34 H 0.14 2.98 8.06 -52.49 -0.42 2.56 16 35 H 0.13 2.46 5.19 -52.49 -0.27 2.19 16 36 H 0.08 1.11 6.25 -51.93 -0.32 0.79 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.99 7.01 -51.93 -0.36 0.63 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 354.64 15.07 5.34 5.34 Total: -1.00 -27.08 354.64 -8.53 -35.62 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -5.45 Total: 8.47 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -3.74 Total: -22.72 kcal Atomic # 7 Polarization: -30.72 SS G_CDS: 0.47 Total: -30.25 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: -0.17 Total: -4.98 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.04 Total: -3.38 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.03 Total: 11.89 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.08 -8.53 -35.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244446075.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.365 kcal (2) G-P(sol) polarization free energy of solvation -27.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds