Wall clock time and date at job start Tue Mar 31 2020 11:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36278 * 119.94070 * 2 1 4 4 C 1.40911 * 119.87597 * 179.97438 * 3 2 1 5 5 C 1.41032 * 120.11386 * 179.97438 * 4 3 2 6 6 H 1.07996 * 120.00347 * 330.11813 * 5 4 3 7 7 C 1.40012 * 119.99888 * 150.12071 * 5 4 3 8 8 N 1.30795 * 119.99987 * 161.73936 * 7 5 4 9 9 Si 1.86798 * 119.99936 * 341.73426 * 7 5 4 10 10 H 1.48505 * 109.46918 * 95.41669 * 9 7 5 11 11 H 1.48497 * 109.47357 * 215.41841 * 9 7 5 12 12 H 1.48499 * 109.47212 * 335.41838 * 9 7 5 13 13 C 1.40943 * 119.76609 * 0.02562 * 4 3 2 14 14 C 1.36241 * 119.87616 * 359.72390 * 13 4 3 15 15 C 1.39913 * 119.93780 * 179.97438 * 2 1 3 16 16 C 1.47999 * 119.87982 * 0.02562 * 15 2 1 17 17 C 1.39683 * 120.08757 * 309.99755 * 16 15 2 18 18 C 1.37998 * 120.10310 * 179.97438 * 17 16 15 19 19 C 1.38184 * 120.27398 * 359.97438 * 18 17 16 20 20 C 1.39460 * 120.16912 * 0.02562 * 19 18 17 21 21 C 1.48386 * 120.05188 * 179.97438 * 20 19 18 22 22 C 1.39755 * 120.90108 * 179.72378 * 21 20 19 23 23 C 1.37984 * 119.02120 * 179.80196 * 22 21 20 24 24 N 1.31924 * 120.87698 * 0.47839 * 23 22 21 25 25 C 1.31927 * 122.00523 * 359.75128 * 24 23 22 26 26 C 1.37985 * 120.87794 * 0.02562 * 25 24 23 27 27 C 1.39096 * 119.89331 * 0.02562 * 20 19 18 28 28 H 1.08998 * 109.47017 * 270.01971 * 1 2 3 29 29 H 1.08999 * 109.46599 * 30.02299 * 1 2 3 30 30 H 1.08997 * 109.47116 * 150.01993 * 1 2 3 31 31 H 1.08002 * 120.05937 * 359.95915 * 3 2 1 32 32 H 0.97000 * 119.99546 * 179.97438 * 8 7 5 33 33 H 1.08006 * 120.05876 * 180.02562 * 13 4 3 34 34 H 1.08001 * 119.93960 * 180.29165 * 14 13 4 35 35 H 1.08004 * 119.94892 * 0.25452 * 17 16 15 36 36 H 1.08006 * 119.86237 * 179.97438 * 18 17 16 37 37 H 1.08000 * 119.91421 * 180.02562 * 19 18 17 38 38 H 1.08005 * 120.49289 * 359.97438 * 22 21 20 39 39 H 1.07998 * 119.56462 * 180.22663 * 23 22 21 40 40 H 1.07998 * 119.55906 * 179.97438 * 25 24 23 41 41 H 1.07994 * 120.48419 * 180.02562 * 26 25 24 42 42 H 1.08007 * 120.13264 * 179.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.1809 0.0000 4 6 3.5963 1.1793 0.0005 5 6 4.3052 2.3985 0.0000 6 1 3.8759 3.2727 -0.4667 7 6 5.5658 2.4755 0.6045 8 7 6.3728 3.4620 0.3106 9 14 6.0949 1.1696 1.8308 10 1 6.8949 0.1308 1.1334 11 1 6.9180 1.7956 2.8965 12 1 4.8925 0.5439 2.4374 13 6 4.2946 -0.0449 0.0005 14 6 3.6048 -1.2198 0.0057 15 6 2.2053 -1.2124 0.0005 16 6 1.4612 -2.4918 0.0005 17 6 0.4372 -2.7063 0.9261 18 6 -0.2571 -3.8989 0.9260 19 6 0.0551 -4.8868 0.0116 20 6 1.0753 -4.6846 -0.9175 21 6 1.4088 -5.7474 -1.8979 22 6 2.4238 -5.5615 -2.8405 23 6 2.7042 -6.5773 -3.7313 24 7 2.0229 -7.7067 -3.7067 25 6 1.0545 -7.9203 -2.8366 26 6 0.7123 -6.9590 -1.9077 27 6 1.7804 -3.4857 -0.9230 28 1 -0.3633 0.0004 1.0276 29 1 -0.3632 0.8898 -0.5142 30 1 -0.3633 -0.8901 -0.5135 31 1 1.6472 2.1162 -0.0007 32 1 7.2460 3.5155 0.7297 33 1 5.3747 -0.0517 0.0014 34 1 4.1388 -2.1585 0.0105 35 1 0.1855 -1.9359 1.6399 36 1 -1.0479 -4.0608 1.6437 37 1 -0.4923 -5.8177 0.0165 38 1 2.9823 -4.6376 -2.8694 39 1 3.4893 -6.4445 -4.4610 40 1 0.5219 -8.8597 -2.8521 41 1 -0.0812 -7.1407 -1.1981 42 1 2.5715 -3.3252 -1.6406 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244781147.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:54 Heat of formation + Delta-G solvation = 53.174540 kcal Electronic energy + Delta-G solvation = -24099.449307 eV Core-core repulsion = 20779.455807 eV Total energy + Delta-G solvation = -3319.993501 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.31258 -40.44170 -39.09078 -35.96653 -34.66283 -33.53711 -33.14460 -32.21544 -30.86966 -30.36303 -27.89737 -26.89077 -25.07492 -24.66887 -23.16231 -22.52447 -22.05232 -21.40310 -19.02937 -18.58294 -17.51050 -17.17556 -17.15739 -16.65160 -16.07618 -15.97764 -15.40708 -15.33920 -15.03150 -14.95282 -14.69343 -14.55701 -14.42075 -13.99408 -13.99015 -13.74164 -13.57612 -13.41851 -12.99591 -12.81227 -12.61154 -12.41720 -12.24223 -12.07192 -11.81480 -11.53356 -11.41042 -11.29577 -11.00041 -10.46841 -10.11285 -9.96755 -9.48501 -9.33005 -8.97223 -8.95528 -6.51825 -0.36126 0.20984 0.24931 0.82701 0.88598 1.04247 1.23636 1.38579 1.45415 2.07911 2.50011 2.77645 3.12564 3.41822 3.50373 3.59566 3.74734 4.01089 4.09318 4.14368 4.19444 4.22043 4.24824 4.30745 4.44068 4.58755 4.64037 4.67609 4.72849 4.83117 4.86752 4.88986 4.99855 5.01420 5.08796 5.11625 5.18233 5.20613 5.33262 5.51786 5.58146 5.66330 5.73178 5.75431 5.81269 5.90286 6.05859 6.11875 6.20683 6.36413 6.69637 6.79667 7.02493 8.10856 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.016816 B = 0.003258 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.718166 B = 8592.486689 C = 9507.367064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.034 4.034 3 C -0.224 4.224 4 C 0.081 3.919 5 C -0.479 4.479 6 H 0.059 0.941 7 C 0.050 3.950 8 N -0.843 5.843 9 Si 0.965 3.035 10 H -0.260 1.260 11 H -0.275 1.275 12 H -0.255 1.255 13 C -0.255 4.255 14 C -0.061 4.061 15 C -0.181 4.181 16 C -0.017 4.017 17 C -0.114 4.114 18 C -0.112 4.112 19 C -0.112 4.112 20 C -0.066 4.066 21 C -0.005 4.005 22 C -0.181 4.181 23 C 0.093 3.907 24 N -0.516 5.516 25 C 0.094 3.906 26 C -0.166 4.166 27 C -0.114 4.114 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.295 0.705 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.127 0.873 36 H 0.155 0.845 37 H 0.153 0.847 38 H 0.138 0.862 39 H 0.173 0.827 40 H 0.185 0.815 41 H 0.164 0.836 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.172 -19.793 0.121 23.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.034 4.034 3 C -0.244 4.244 4 C 0.079 3.921 5 C -0.508 4.508 6 H 0.077 0.923 7 C -0.165 4.165 8 N -0.468 5.468 9 Si 0.788 3.212 10 H -0.185 1.185 11 H -0.202 1.202 12 H -0.178 1.178 13 C -0.274 4.274 14 C -0.079 4.079 15 C -0.182 4.182 16 C -0.017 4.017 17 C -0.133 4.133 18 C -0.130 4.130 19 C -0.130 4.130 20 C -0.066 4.066 21 C -0.013 4.013 22 C -0.200 4.200 23 C -0.063 4.063 24 N -0.226 5.226 25 C -0.062 4.062 26 C -0.185 4.185 27 C -0.133 4.133 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.133 0.867 35 H 0.145 0.855 36 H 0.173 0.827 37 H 0.170 0.830 38 H 0.156 0.844 39 H 0.190 0.810 40 H 0.202 0.798 41 H 0.182 0.818 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.730 -20.242 -0.501 23.400 hybrid contribution 0.887 1.352 0.754 1.784 sum -10.843 -18.889 0.253 21.782 Atomic orbital electron populations 1.20866 0.90111 1.02498 1.02660 1.19632 0.96347 0.91700 0.95722 1.20772 0.93325 0.97077 1.13186 1.17907 0.92998 0.92442 0.88801 1.19489 1.00920 0.96925 1.33463 0.92319 1.26835 0.94632 0.97783 0.97298 1.69706 1.08473 1.31801 1.36854 0.85492 0.79285 0.78186 0.78194 1.18514 1.20184 1.17832 1.20782 0.98215 0.93243 1.15193 1.20653 0.93679 0.96670 0.96937 1.18329 0.92086 0.91699 1.16105 1.18721 0.95499 0.92281 0.95164 1.21611 0.95464 0.98279 0.97910 1.21310 1.00047 0.92471 0.99172 1.21506 0.96631 1.00395 0.94490 1.18689 0.98052 0.92934 0.96923 1.19375 0.94499 0.93790 0.93658 1.22440 0.99133 1.01559 0.96904 1.22982 0.97835 0.88273 0.97170 1.67682 1.07746 1.23095 1.24032 1.23207 0.93128 0.99872 0.89996 1.22494 1.01621 0.93048 1.01331 1.21411 1.00117 0.92986 0.98746 0.90090 0.91783 0.91119 0.87952 0.89400 0.88655 0.86717 0.85481 0.82742 0.82964 0.84442 0.81019 0.79825 0.81834 0.86481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.09 8.43 71.24 0.60 -2.49 16 2 C -0.03 -1.32 5.83 -19.92 -0.12 -1.44 16 3 C -0.22 -10.27 9.36 22.47 0.21 -10.06 16 4 C 0.08 4.14 5.10 -21.28 -0.11 4.03 16 5 C -0.48 -26.84 9.55 23.39 0.22 -26.62 16 6 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 7 C 0.05 2.68 5.40 85.28 0.46 3.14 16 8 N -0.84 -45.99 13.93 21.84 0.30 -45.69 16 9 Si 0.96 43.00 24.51 68.60 1.68 44.68 16 10 H -0.26 -11.02 6.70 99.48 0.67 -10.35 16 11 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 12 H -0.25 -11.65 6.87 99.48 0.68 -10.97 16 13 C -0.26 -12.14 7.11 22.47 0.16 -11.98 16 14 C -0.06 -2.55 9.43 22.22 0.21 -2.34 16 15 C -0.18 -6.94 5.49 -19.87 -0.11 -7.05 16 16 C -0.02 -0.52 4.71 -20.06 -0.09 -0.61 16 17 C -0.11 -2.92 7.89 22.56 0.18 -2.75 16 18 C -0.11 -2.18 10.02 22.20 0.22 -1.96 16 19 C -0.11 -2.13 9.45 22.55 0.21 -1.92 16 20 C -0.07 -1.56 5.87 -20.07 -0.12 -1.68 16 21 C -0.01 -0.11 5.91 -19.84 -0.12 -0.23 16 22 C -0.18 -4.01 9.50 22.58 0.21 -3.80 16 23 C 0.09 1.95 11.17 84.62 0.95 2.89 16 24 N -0.52 -11.31 10.35 -196.12 -2.03 -13.34 16 25 C 0.09 1.62 11.17 84.62 0.95 2.56 16 26 C -0.17 -2.79 9.50 22.58 0.21 -2.57 16 27 C -0.11 -3.26 8.90 22.75 0.20 -3.06 16 28 H 0.08 2.07 7.47 -2.39 -0.02 2.05 16 29 H 0.06 1.79 8.08 -2.39 -0.02 1.77 16 30 H 0.07 1.94 6.43 -2.39 -0.02 1.92 16 31 H 0.10 4.54 8.06 -2.91 -0.02 4.51 16 32 H 0.30 14.43 8.30 -92.71 -0.77 13.66 16 33 H 0.10 4.55 4.73 -2.91 -0.01 4.54 16 34 H 0.11 4.21 8.03 -2.91 -0.02 4.19 16 35 H 0.13 3.11 6.80 -2.91 -0.02 3.09 16 36 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 37 H 0.15 1.84 6.28 -2.91 -0.02 1.82 16 38 H 0.14 2.97 6.34 -2.91 -0.02 2.95 16 39 H 0.17 2.78 8.06 -2.91 -0.02 2.75 16 40 H 0.18 1.88 8.06 -2.91 -0.02 1.86 16 41 H 0.16 1.70 6.33 -2.91 -0.02 1.69 16 42 H 0.12 3.38 6.27 -2.91 -0.02 3.36 16 Total: -1.00 -63.98 344.62 5.28 -58.70 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.99 Total: 23.56 kcal Atomic # 6 Polarization: -72.26 SS G_CDS: 4.34 Total: -67.92 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: -1.73 Total: -59.02 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.68 Total: 44.68 kcal Total: -63.98 5.28 -58.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244781147.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.877 kcal (2) G-P(sol) polarization free energy of solvation -63.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds