Wall clock time and date at job start Tue Mar 31 2020 11:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38181 * 119.91722 * 2 1 4 4 C 1.38003 * 120.27657 * 179.97438 * 3 2 1 5 5 C 1.39689 * 120.09196 * 0.02579 * 4 3 2 6 6 C 1.47981 * 120.08266 * 179.97438 * 5 4 3 7 7 C 1.39885 * 119.44963 * 359.97438 * 6 5 4 8 8 C 1.36620 * 119.46858 * 179.97438 * 7 6 5 9 9 C 1.41299 * 118.40934 * 359.97438 * 8 7 6 10 10 C 1.41054 * 120.55207 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00270 * 156.75142 * 10 9 8 12 12 C 1.40033 * 119.99867 * 336.74691 * 10 9 8 13 13 N 1.30789 * 120.00007 * 344.36786 * 12 10 9 14 14 Si 1.86797 * 119.99681 * 164.36477 * 12 10 9 15 15 H 1.48501 * 109.47292 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47214 * 120.00609 * 14 12 10 17 17 H 1.48501 * 109.46861 * 240.00100 * 14 12 10 18 18 C 1.40950 * 118.89333 * 0.02562 * 9 8 7 19 19 N 1.31265 * 120.40202 * 359.71716 * 18 9 8 20 20 C 1.39395 * 119.83408 * 359.97438 * 5 4 3 21 21 C 1.39074 * 119.72494 * 359.97438 * 20 5 4 22 22 C 1.48406 * 120.04891 * 179.97438 * 21 20 5 23 23 C 1.39336 * 120.11879 * 55.59020 * 22 21 20 24 24 C 1.38020 * 119.87478 * 179.77216 * 23 22 21 25 25 C 1.38315 * 120.12284 * 0.52409 * 24 23 22 26 26 C 1.38316 * 120.24316 * 359.70491 * 25 24 23 27 27 C 1.38025 * 120.12088 * 0.04218 * 26 25 24 28 28 H 1.09003 * 109.46907 * 95.40702 * 1 2 3 29 29 H 1.08995 * 109.47353 * 215.41101 * 1 2 3 30 30 H 1.08998 * 109.46708 * 335.41507 * 1 2 3 31 31 H 1.07996 * 119.86497 * 359.97438 * 3 2 1 32 32 H 1.07993 * 119.95351 * 180.02562 * 4 3 2 33 33 H 1.07997 * 120.27294 * 0.02562 * 7 6 5 34 34 H 1.08000 * 120.79335 * 180.02562 * 8 7 6 35 35 H 0.96995 * 119.99597 * 180.02562 * 13 12 10 36 36 H 1.08003 * 119.79602 * 179.97438 * 18 9 8 37 37 H 1.07994 * 120.13652 * 179.72569 * 20 5 4 38 38 H 1.08004 * 120.05943 * 0.02562 * 23 22 21 39 39 H 1.08004 * 119.93812 * 180.22794 * 24 23 22 40 40 H 1.08002 * 119.88158 * 179.72551 * 25 24 23 41 41 H 1.08004 * 119.94599 * 180.02562 * 26 25 24 42 42 H 1.08000 * 120.05989 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1977 0.0000 4 6 3.5762 1.2063 0.0005 5 6 4.2841 0.0021 0.0005 6 6 5.7639 0.0117 0.0005 7 6 6.4438 1.2342 0.0000 8 6 7.8100 1.2434 0.0005 9 6 8.4906 0.0051 0.0022 10 6 9.9005 -0.0381 0.0022 11 1 10.4140 -0.9130 0.3726 12 6 10.6345 1.0536 -0.4780 13 7 10.0447 1.9720 -1.1985 14 14 12.4558 1.1979 -0.0894 15 1 12.8792 0.0388 0.7367 16 1 13.2323 1.2144 -1.3551 17 1 12.7039 2.4559 0.6598 18 6 7.7373 -1.1861 0.0026 19 7 6.4254 -1.1424 0.0072 20 6 3.5932 -1.2085 0.0005 21 6 2.2025 -1.2088 0.0011 22 6 1.4596 -2.4935 0.0005 23 6 1.6996 -3.4404 0.9941 24 6 1.0024 -4.6316 0.9914 25 6 0.0748 -4.8907 -0.0013 26 6 -0.1640 -3.9563 -0.9928 27 6 0.5237 -2.7596 -0.9968 28 1 -0.3633 -0.0968 -1.0231 29 1 -0.3634 -0.8375 0.5954 30 1 -0.3633 0.9345 0.4276 31 1 1.6527 2.1309 -0.0004 32 1 4.1095 2.1454 0.0009 33 1 5.8933 2.1633 0.0000 34 1 8.3566 2.1749 0.0005 35 1 10.5532 2.7279 -1.5314 36 1 8.2426 -2.1407 0.0035 37 1 4.1356 -2.1424 -0.0039 38 1 2.4268 -3.2408 1.7673 39 1 1.1850 -5.3647 1.7632 40 1 -0.4653 -5.8260 -0.0021 41 1 -0.8897 -4.1635 -1.7654 42 1 0.3368 -2.0309 -1.7717 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244782812.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:16 Heat of formation + Delta-G solvation = 58.686022 kcal Electronic energy + Delta-G solvation = -23849.017119 eV Core-core repulsion = 20529.262614 eV Total energy + Delta-G solvation = -3319.754505 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.77325 -38.65154 -37.67663 -34.45344 -33.05568 -32.04193 -30.86873 -30.74543 -29.92473 -28.79009 -27.09781 -24.82860 -23.41479 -22.46782 -21.96429 -21.66130 -20.68872 -19.74886 -17.55768 -17.06400 -16.13287 -15.61613 -15.29741 -15.05954 -14.74405 -14.56474 -14.15518 -13.84776 -13.61218 -13.52138 -13.20854 -13.03290 -12.72758 -12.59960 -12.55524 -12.02645 -11.88848 -11.76939 -11.61676 -11.42472 -11.31966 -11.25765 -11.00312 -10.75355 -10.56340 -10.44796 -9.92914 -9.58620 -9.03346 -8.90014 -8.57549 -8.37887 -8.13545 -8.05664 -7.28856 -7.00218 -4.60086 1.13622 1.44097 1.60014 1.96674 2.62219 2.90408 2.93096 2.97650 3.11724 3.70466 3.82363 4.16933 4.59967 4.78761 4.96860 4.97876 5.14750 5.19894 5.23202 5.43804 5.48670 5.54909 5.60870 5.63379 5.73597 5.80389 5.96425 6.00233 6.04271 6.07563 6.14313 6.33539 6.41301 6.51829 6.55716 6.58570 6.62662 6.69462 6.77527 6.84290 6.92169 7.01244 7.05283 7.13304 7.28235 7.43521 7.66736 7.74184 7.85596 8.28220 8.47361 8.57366 9.51833 9.83982 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.022887 B = 0.002722 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.120436 B =10284.984379 C =11235.908637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.104 4.104 3 C -0.115 4.115 4 C -0.127 4.127 5 C 0.018 3.982 6 C -0.009 4.009 7 C -0.121 4.121 8 C -0.145 4.145 9 C 0.067 3.933 10 C -0.431 4.431 11 H 0.087 0.913 12 C 0.070 3.930 13 N -0.777 5.777 14 Si 0.917 3.083 15 H -0.257 1.257 16 H -0.271 1.271 17 H -0.269 1.269 18 C -0.017 4.017 19 N -0.448 5.448 20 C -0.092 4.092 21 C -0.058 4.058 22 C -0.027 4.027 23 C -0.106 4.106 24 C -0.120 4.120 25 C -0.128 4.128 26 C -0.123 4.123 27 C -0.108 4.108 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.130 0.870 35 H 0.286 0.714 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.148 -3.950 1.590 14.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.104 4.104 3 C -0.134 4.134 4 C -0.146 4.146 5 C 0.017 3.983 6 C -0.142 4.142 7 C -0.142 4.142 8 C -0.170 4.170 9 C 0.062 3.938 10 C -0.459 4.459 11 H 0.105 0.895 12 C -0.150 4.150 13 N -0.400 5.400 14 Si 0.740 3.260 15 H -0.180 1.180 16 H -0.196 1.196 17 H -0.194 1.194 18 C -0.182 4.182 19 N -0.155 5.155 20 C -0.111 4.111 21 C -0.058 4.058 22 C -0.027 4.027 23 C -0.124 4.124 24 C -0.138 4.138 25 C -0.146 4.146 26 C -0.141 4.141 27 C -0.126 4.126 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.119 0.881 34 H 0.148 0.852 35 H 0.098 0.902 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.576 -4.478 1.455 15.318 hybrid contribution 1.480 1.039 -0.016 1.809 sum -13.096 -3.438 1.439 13.616 Atomic orbital electron populations 1.20743 0.91911 1.02010 1.01599 1.19713 0.95221 0.92217 1.03292 1.20711 0.93908 0.96758 1.01976 1.21236 0.93649 0.97741 1.02015 1.18610 0.91724 0.92300 0.95675 1.18768 0.90724 0.89161 1.15596 1.21315 0.95335 0.96749 1.00762 1.21416 0.92486 0.99118 1.04000 1.18636 0.94375 0.92182 0.88558 1.19737 0.91196 1.01314 1.33690 0.89460 1.26114 1.02065 0.94472 0.92392 1.69777 1.39016 1.09114 1.22107 0.86102 0.80685 0.79735 0.79440 1.18010 1.19608 1.19402 1.22452 0.88506 0.97026 1.10217 1.66912 1.10532 1.29028 1.09041 1.21280 0.91730 0.98619 0.99488 1.18532 0.92844 0.91102 1.03341 1.18836 0.95620 0.93382 0.94908 1.21311 0.99371 0.93328 0.98436 1.21075 0.96821 0.97055 0.98889 1.21128 0.98841 0.99265 0.95331 1.21045 1.00096 0.94113 0.98858 1.21235 0.96045 0.97144 0.98130 0.91890 0.91884 0.92244 0.86594 0.86099 0.88066 0.85190 0.90233 0.85341 0.85232 0.85796 0.86149 0.86435 0.86261 0.86044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 8.55 36.01 0.31 -0.93 16 2 C -0.10 -1.56 5.89 -104.19 -0.61 -2.17 16 3 C -0.12 -1.76 9.65 -39.69 -0.38 -2.14 16 4 C -0.13 -2.25 9.41 -39.13 -0.37 -2.62 16 5 C 0.02 0.36 5.87 -104.93 -0.62 -0.25 16 6 C -0.01 -0.21 6.74 -82.74 -0.56 -0.76 16 7 C -0.12 -2.82 9.38 -39.55 -0.37 -3.19 16 8 C -0.15 -3.63 8.75 -39.00 -0.34 -3.98 16 9 C 0.07 1.72 5.61 -106.64 -0.60 1.12 16 10 C -0.43 -10.60 9.08 -37.84 -0.34 -10.94 16 11 H 0.09 2.03 7.89 -52.49 -0.41 1.61 16 12 C 0.07 1.62 5.22 -17.32 -0.09 1.53 16 13 N -0.78 -18.61 10.77 55.55 0.60 -18.02 16 14 Si 0.92 17.17 29.59 -169.99 -5.03 12.14 16 15 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 16 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 17 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 18 C -0.02 -0.41 10.97 -16.77 -0.18 -0.59 16 19 N -0.45 -10.97 9.38 -9.10 -0.09 -11.06 16 20 C -0.09 -1.76 9.13 -38.84 -0.35 -2.12 16 21 C -0.06 -0.95 5.40 -104.95 -0.57 -1.52 16 22 C -0.03 -0.40 4.51 -104.90 -0.47 -0.87 16 23 C -0.11 -1.44 9.61 -39.25 -0.38 -1.82 16 24 C -0.12 -1.38 10.03 -39.63 -0.40 -1.78 16 25 C -0.13 -1.35 10.04 -39.52 -0.40 -1.74 16 26 C -0.12 -1.34 10.03 -39.63 -0.40 -1.73 16 27 C -0.11 -1.35 8.26 -39.25 -0.32 -1.68 16 28 H 0.06 0.66 7.52 -51.93 -0.39 0.27 16 29 H 0.06 0.74 7.00 -51.93 -0.36 0.37 16 30 H 0.06 0.60 8.05 -51.93 -0.42 0.19 16 31 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.12 2.00 6.14 -52.49 -0.32 1.68 16 33 H 0.10 2.06 6.14 -52.49 -0.32 1.74 16 34 H 0.13 3.28 6.08 -52.49 -0.32 2.96 16 35 H 0.29 6.16 8.29 -40.82 -0.34 5.82 16 36 H 0.13 2.90 8.06 -52.48 -0.42 2.48 16 37 H 0.13 2.59 7.52 -52.49 -0.39 2.20 16 38 H 0.12 1.67 8.06 -52.48 -0.42 1.24 16 39 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 40 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 42 H 0.12 1.42 7.27 -52.49 -0.38 1.04 16 LS Contribution 353.43 15.07 5.33 5.33 Total: -1.00 -27.27 353.43 -11.63 -38.90 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -5.00 Total: 10.88 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: -7.45 Total: -38.17 kcal Atomic # 7 Polarization: -29.59 SS G_CDS: 0.51 Total: -29.07 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.14 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.27 -11.63 -38.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244782812.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.590 kcal (2) G-P(sol) polarization free energy of solvation -27.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds