Wall clock time and date at job start Tue Mar 31 2020 11:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38181 * 119.91722 * 2 1 4 4 C 1.38003 * 120.27657 * 179.97438 * 3 2 1 5 5 C 1.39689 * 120.09196 * 0.02579 * 4 3 2 6 6 C 1.47981 * 120.08266 * 179.97438 * 5 4 3 7 7 C 1.39885 * 119.44963 * 359.97438 * 6 5 4 8 8 C 1.36620 * 119.46858 * 179.97438 * 7 6 5 9 9 C 1.41299 * 118.40934 * 359.97438 * 8 7 6 10 10 C 1.41054 * 120.55207 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00270 * 156.75142 * 10 9 8 12 12 C 1.40033 * 119.99867 * 336.74691 * 10 9 8 13 13 N 1.30789 * 120.00007 * 344.36786 * 12 10 9 14 14 Si 1.86797 * 119.99681 * 164.36477 * 12 10 9 15 15 H 1.48501 * 109.47292 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47214 * 120.00609 * 14 12 10 17 17 H 1.48501 * 109.46861 * 240.00100 * 14 12 10 18 18 C 1.40950 * 118.89333 * 0.02562 * 9 8 7 19 19 N 1.31265 * 120.40202 * 359.71716 * 18 9 8 20 20 C 1.39395 * 119.83408 * 359.97438 * 5 4 3 21 21 C 1.39074 * 119.72494 * 359.97438 * 20 5 4 22 22 C 1.48406 * 120.04891 * 179.97438 * 21 20 5 23 23 C 1.39336 * 120.11879 * 55.59020 * 22 21 20 24 24 C 1.38020 * 119.87478 * 179.77216 * 23 22 21 25 25 C 1.38315 * 120.12284 * 0.52409 * 24 23 22 26 26 C 1.38316 * 120.24316 * 359.70491 * 25 24 23 27 27 C 1.38025 * 120.12088 * 0.04218 * 26 25 24 28 28 H 1.09003 * 109.46907 * 95.40702 * 1 2 3 29 29 H 1.08995 * 109.47353 * 215.41101 * 1 2 3 30 30 H 1.08998 * 109.46708 * 335.41507 * 1 2 3 31 31 H 1.07996 * 119.86497 * 359.97438 * 3 2 1 32 32 H 1.07993 * 119.95351 * 180.02562 * 4 3 2 33 33 H 1.07997 * 120.27294 * 0.02562 * 7 6 5 34 34 H 1.08000 * 120.79335 * 180.02562 * 8 7 6 35 35 H 0.96995 * 119.99597 * 180.02562 * 13 12 10 36 36 H 1.08003 * 119.79602 * 179.97438 * 18 9 8 37 37 H 1.07994 * 120.13652 * 179.72569 * 20 5 4 38 38 H 1.08004 * 120.05943 * 0.02562 * 23 22 21 39 39 H 1.08004 * 119.93812 * 180.22794 * 24 23 22 40 40 H 1.08002 * 119.88158 * 179.72551 * 25 24 23 41 41 H 1.08004 * 119.94599 * 180.02562 * 26 25 24 42 42 H 1.08000 * 120.05989 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1977 0.0000 4 6 3.5762 1.2063 0.0005 5 6 4.2841 0.0021 0.0005 6 6 5.7639 0.0117 0.0005 7 6 6.4438 1.2342 0.0000 8 6 7.8100 1.2434 0.0005 9 6 8.4906 0.0051 0.0022 10 6 9.9005 -0.0381 0.0022 11 1 10.4140 -0.9130 0.3726 12 6 10.6345 1.0536 -0.4780 13 7 10.0447 1.9720 -1.1985 14 14 12.4558 1.1979 -0.0894 15 1 12.8792 0.0388 0.7367 16 1 13.2323 1.2144 -1.3551 17 1 12.7039 2.4559 0.6598 18 6 7.7373 -1.1861 0.0026 19 7 6.4254 -1.1424 0.0072 20 6 3.5932 -1.2085 0.0005 21 6 2.2025 -1.2088 0.0011 22 6 1.4596 -2.4935 0.0005 23 6 1.6996 -3.4404 0.9941 24 6 1.0024 -4.6316 0.9914 25 6 0.0748 -4.8907 -0.0013 26 6 -0.1640 -3.9563 -0.9928 27 6 0.5237 -2.7596 -0.9968 28 1 -0.3633 -0.0968 -1.0231 29 1 -0.3634 -0.8375 0.5954 30 1 -0.3633 0.9345 0.4276 31 1 1.6527 2.1309 -0.0004 32 1 4.1095 2.1454 0.0009 33 1 5.8933 2.1633 0.0000 34 1 8.3566 2.1749 0.0005 35 1 10.5532 2.7279 -1.5314 36 1 8.2426 -2.1407 0.0035 37 1 4.1356 -2.1424 -0.0039 38 1 2.4268 -3.2408 1.7673 39 1 1.1850 -5.3647 1.7632 40 1 -0.4653 -5.8260 -0.0021 41 1 -0.8897 -4.1635 -1.7654 42 1 0.3368 -2.0309 -1.7717 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244782812.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:16 Heat of formation + Delta-G solvation = 48.719291 kcal Electronic energy + Delta-G solvation = -23849.449309 eV Core-core repulsion = 20529.262614 eV Total energy + Delta-G solvation = -3320.186695 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.02513 -40.18410 -38.98074 -36.19164 -34.41538 -33.25732 -32.55625 -31.91835 -31.46746 -29.94545 -28.56000 -26.41036 -24.73602 -23.59062 -23.36926 -23.21712 -22.07537 -21.11127 -19.38501 -18.29381 -17.49107 -17.11617 -16.68522 -16.37920 -15.93954 -15.86455 -15.57563 -15.40601 -14.88060 -14.70777 -14.40992 -14.31357 -14.15854 -14.02393 -13.62099 -13.52410 -13.41323 -13.28743 -12.96296 -12.83959 -12.71971 -12.49202 -12.29331 -12.02685 -11.88259 -11.71292 -11.59297 -11.29368 -10.30011 -10.22861 -10.06065 -9.96250 -9.81669 -9.29084 -8.93130 -8.73018 -6.47000 -0.05338 0.21124 0.52472 0.75258 0.94397 1.12234 1.37586 1.52686 1.54848 2.13941 2.55998 2.87491 3.03444 3.67998 3.71722 3.75732 3.98817 4.07735 4.12373 4.18239 4.29714 4.32187 4.33709 4.56663 4.60823 4.66299 4.70484 4.76207 4.84298 4.88143 4.94500 4.98616 5.04932 5.11253 5.17227 5.20557 5.28192 5.30387 5.45438 5.58355 5.61954 5.63361 5.71870 5.77079 5.81166 5.91888 6.01971 6.12736 6.18128 6.41683 6.63824 6.70616 7.64246 8.12943 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.022887 B = 0.002722 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.120436 B =10284.984379 C =11235.908637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.094 4.094 3 C -0.111 4.111 4 C -0.130 4.130 5 C -0.020 4.020 6 C -0.012 4.012 7 C -0.127 4.127 8 C -0.162 4.162 9 C 0.041 3.959 10 C -0.462 4.462 11 H 0.090 0.910 12 C 0.032 3.968 13 N -0.808 5.808 14 Si 0.993 3.007 15 H -0.254 1.254 16 H -0.263 1.263 17 H -0.261 1.261 18 C -0.039 4.039 19 N -0.463 5.463 20 C -0.106 4.106 21 C -0.059 4.059 22 C -0.052 4.052 23 C -0.127 4.127 24 C -0.124 4.124 25 C -0.123 4.123 26 C -0.121 4.121 27 C -0.113 4.113 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.154 0.846 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.296 0.704 36 H 0.137 0.863 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.140 0.860 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.836 -3.866 1.306 17.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.094 4.094 3 C -0.129 4.129 4 C -0.149 4.149 5 C -0.021 4.021 6 C -0.147 4.147 7 C -0.147 4.147 8 C -0.188 4.188 9 C 0.036 3.964 10 C -0.490 4.490 11 H 0.109 0.891 12 C -0.185 4.185 13 N -0.432 5.432 14 Si 0.813 3.187 15 H -0.178 1.178 16 H -0.188 1.188 17 H -0.186 1.186 18 C -0.203 4.203 19 N -0.171 5.171 20 C -0.125 4.125 21 C -0.059 4.059 22 C -0.052 4.052 23 C -0.145 4.145 24 C -0.142 4.142 25 C -0.140 4.140 26 C -0.138 4.138 27 C -0.131 4.131 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.171 0.829 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.108 0.892 36 H 0.155 0.845 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.158 0.842 40 H 0.167 0.833 41 H 0.167 0.833 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.274 -4.409 1.170 17.866 hybrid contribution 1.994 0.936 0.054 2.203 sum -15.280 -3.473 1.224 15.718 Atomic orbital electron populations 1.20805 0.88904 1.03261 1.02954 1.20230 0.97372 0.91437 1.00355 1.21119 0.92920 0.98499 1.00330 1.21401 0.94931 0.96887 1.01646 1.18651 0.90220 0.94069 0.99163 1.19369 0.92623 0.88867 1.13831 1.21580 0.94941 0.97941 1.00237 1.21479 0.93333 0.98790 1.05155 1.18929 0.95335 0.92607 0.89528 1.19985 0.91208 1.02638 1.35195 0.89148 1.26997 1.06635 0.93464 0.91438 1.69807 1.41091 1.09744 1.22527 0.84977 0.74551 0.79815 0.79372 1.17768 1.18770 1.18576 1.22658 0.88895 0.97437 1.11279 1.66966 1.10494 1.29908 1.09727 1.21180 0.93195 0.97324 1.00849 1.18770 0.91789 0.93102 1.02235 1.18844 0.96955 0.92973 0.96460 1.21358 1.00052 0.94525 0.98571 1.21348 0.96559 0.96482 0.99819 1.21542 0.97954 1.00276 0.94263 1.21421 0.99871 0.93148 0.99381 1.21373 0.95748 0.98286 0.97667 0.90067 0.91822 0.90067 0.82852 0.85281 0.85456 0.85823 0.89245 0.84521 0.87566 0.87205 0.84208 0.83313 0.83251 0.85232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.01 8.55 71.24 0.61 -1.41 16 2 C -0.09 -2.60 5.89 -19.58 -0.12 -2.71 16 3 C -0.11 -3.11 9.65 22.20 0.21 -2.89 16 4 C -0.13 -4.50 9.41 22.56 0.21 -4.29 16 5 C -0.02 -0.85 5.87 -20.07 -0.12 -0.97 16 6 C -0.01 -0.59 6.74 41.95 0.28 -0.31 16 7 C -0.13 -6.14 9.38 22.29 0.21 -5.93 16 8 C -0.16 -8.53 8.75 22.64 0.20 -8.34 16 9 C 0.04 2.20 5.61 -21.17 -0.12 2.08 16 10 C -0.46 -23.77 9.08 23.40 0.21 -23.56 16 11 H 0.09 4.40 7.89 -2.91 -0.02 4.38 16 12 C 0.03 1.53 5.22 85.28 0.44 1.97 16 13 N -0.81 -39.74 10.77 21.84 0.24 -39.51 16 14 Si 0.99 35.43 29.59 68.60 2.03 37.46 16 15 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 16 H -0.26 -8.99 7.11 99.48 0.71 -8.29 16 17 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 18 C -0.04 -2.05 10.97 85.44 0.94 -1.11 16 19 N -0.46 -24.16 9.38 -182.70 -1.71 -25.87 16 20 C -0.11 -4.25 9.13 22.75 0.21 -4.04 16 21 C -0.06 -1.92 5.40 -20.07 -0.11 -2.03 16 22 C -0.05 -1.48 4.51 -20.04 -0.09 -1.57 16 23 C -0.13 -3.45 9.61 22.48 0.22 -3.23 16 24 C -0.12 -2.64 10.03 22.24 0.22 -2.42 16 25 C -0.12 -2.18 10.04 22.31 0.22 -1.96 16 26 C -0.12 -2.21 10.03 22.24 0.22 -1.98 16 27 C -0.11 -2.59 8.26 22.48 0.19 -2.41 16 28 H 0.08 1.36 7.52 -2.39 -0.02 1.34 16 29 H 0.06 1.28 7.00 -2.39 -0.02 1.27 16 30 H 0.08 1.27 8.05 -2.39 -0.02 1.26 16 31 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 32 H 0.13 4.15 6.14 -2.91 -0.02 4.14 16 33 H 0.13 5.28 6.14 -2.91 -0.02 5.26 16 34 H 0.12 6.54 6.08 -2.91 -0.02 6.52 16 35 H 0.30 12.93 8.29 -92.71 -0.77 12.16 16 36 H 0.14 6.66 8.06 -2.91 -0.02 6.63 16 37 H 0.11 4.62 7.52 -2.91 -0.02 4.59 16 38 H 0.11 3.16 8.06 -2.91 -0.02 3.14 16 39 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 40 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 41 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 42 H 0.13 2.68 7.27 -2.91 -0.02 2.66 16 Total: -1.00 -63.08 353.43 5.64 -57.45 By element: Atomic # 1 Polarization: 36.55 SS G_CDS: 1.04 Total: 37.59 kcal Atomic # 6 Polarization: -71.16 SS G_CDS: 4.05 Total: -67.11 kcal Atomic # 7 Polarization: -63.90 SS G_CDS: -1.48 Total: -65.38 kcal Atomic # 14 Polarization: 35.43 SS G_CDS: 2.03 Total: 37.46 kcal Total: -63.08 5.64 -57.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244782812.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.165 kcal (2) G-P(sol) polarization free energy of solvation -63.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds