Wall clock time and date at job start Tue Mar 31 2020 11:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38136 * 119.93515 * 2 1 4 4 C 1.38080 * 120.24349 * 180.32142 * 3 2 1 5 5 C 1.39432 * 120.12619 * 359.67863 * 4 3 2 6 6 C 1.48379 * 120.06552 * 179.97438 * 5 4 3 7 7 C 1.38891 * 119.60806 * 359.75356 * 6 5 4 8 8 C 1.40849 * 118.76082 * 179.73643 * 7 6 5 9 9 C 1.41530 * 120.98803 * 180.25689 * 8 7 6 10 10 H 1.08003 * 119.99970 * 203.56213 * 9 8 7 11 11 C 1.40040 * 119.99903 * 23.56267 * 9 8 7 12 12 N 1.30733 * 120.00210 * 17.00921 * 11 9 8 13 13 Si 1.86803 * 120.00032 * 197.00814 * 11 9 8 14 14 H 1.48499 * 109.47071 * 94.63994 * 13 11 9 15 15 H 1.48497 * 109.47211 * 214.64164 * 13 11 9 16 16 H 1.48503 * 109.46951 * 334.64464 * 13 11 9 17 17 C 1.41140 * 118.02775 * 0.52285 * 8 7 6 18 18 C 1.37747 * 119.06815 * 359.72906 * 17 8 7 19 19 N 1.31924 * 121.15296 * 0.02562 * 18 17 8 20 20 C 1.39133 * 119.87461 * 0.02562 * 5 4 3 21 21 C 1.39153 * 119.75104 * 359.97438 * 20 5 4 22 22 C 1.48407 * 120.06073 * 180.02562 * 21 20 5 23 23 C 1.39332 * 120.11778 * 129.72835 * 22 21 20 24 24 C 1.38028 * 119.87770 * 179.76876 * 23 22 21 25 25 C 1.38323 * 120.11481 * 0.52948 * 24 23 22 26 26 C 1.38317 * 120.24612 * 359.69993 * 25 24 23 27 27 C 1.38020 * 120.12184 * 0.04035 * 26 25 24 28 28 H 1.09004 * 109.47027 * 270.27660 * 1 2 3 29 29 H 1.08994 * 109.47424 * 30.27516 * 1 2 3 30 30 H 1.09002 * 109.47119 * 150.28377 * 1 2 3 31 31 H 1.07994 * 119.87746 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.93096 * 179.69715 * 4 3 2 33 33 H 1.08005 * 120.62192 * 359.97438 * 7 6 5 34 34 H 0.97000 * 119.99857 * 180.02562 * 12 11 9 35 35 H 1.07999 * 120.46905 * 179.75976 * 17 8 7 36 36 H 1.08001 * 119.42252 * 180.02562 * 18 17 8 37 37 H 1.08002 * 120.12893 * 180.02562 * 20 5 4 38 38 H 1.07996 * 120.06509 * 0.02562 * 23 22 21 39 39 H 1.07989 * 119.94228 * 180.22617 * 24 23 22 40 40 H 1.07999 * 119.87550 * 179.71858 * 25 24 23 41 41 H 1.07999 * 119.93855 * 180.02562 * 26 25 24 42 42 H 1.07999 * 120.06233 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1963 1.1971 0.0000 4 6 3.5770 1.2045 -0.0067 5 6 4.2833 0.0023 -0.0067 6 6 5.7671 0.0119 -0.0145 7 6 6.4454 1.2238 -0.0269 8 6 7.8539 1.2121 -0.0285 9 6 8.5926 2.4193 -0.0354 10 1 9.6053 2.4305 -0.4106 11 6 8.0104 3.5993 0.4440 12 7 6.9395 3.5428 1.1918 13 14 8.7639 5.2539 0.0151 14 1 8.0824 5.8133 -1.1798 15 1 8.5988 6.1847 1.1603 16 1 10.2095 5.0788 -0.2762 17 6 8.5067 -0.0392 -0.0286 18 6 7.7489 -1.1895 -0.0215 19 7 6.4306 -1.1382 -0.0152 20 6 3.5942 -1.2063 -0.0005 21 6 2.2027 -1.2078 0.0062 22 6 1.4607 -2.4930 0.0134 23 6 0.4485 -2.7107 0.9458 24 6 -0.2417 -3.9061 0.9450 25 6 0.0774 -4.8911 0.0277 26 6 1.0845 -4.6821 -0.8970 27 6 1.7775 -3.4885 -0.9086 28 1 -0.3633 0.0050 1.0277 29 1 -0.3634 0.8874 -0.5181 30 1 -0.3633 -0.8925 -0.5094 31 1 1.6532 2.1306 0.0004 32 1 4.1108 2.1433 -0.0116 33 1 5.9031 2.1578 -0.0314 34 1 6.5361 4.3602 1.5236 35 1 9.5853 -0.0942 -0.0337 36 1 8.2425 -2.1501 -0.0212 37 1 4.1372 -2.1399 -0.0001 38 1 0.2016 -1.9441 1.6652 39 1 -1.0288 -4.0745 1.6648 40 1 -0.4620 -5.8267 0.0335 41 1 1.3293 -5.4544 -1.6112 42 1 2.5634 -3.3262 -1.6313 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244784497.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:19 Heat of formation + Delta-G solvation = 59.876433 kcal Electronic energy + Delta-G solvation = -24177.939830 eV Core-core repulsion = 20858.236945 eV Total energy + Delta-G solvation = -3319.702885 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.83858 -38.63912 -37.65672 -34.25227 -33.31028 -32.09860 -30.92513 -30.62880 -29.49813 -28.82340 -26.24571 -25.91771 -23.31868 -22.50345 -21.93564 -21.72705 -20.70497 -19.66742 -17.71307 -16.77376 -15.88178 -15.52825 -15.21275 -15.13603 -14.65544 -14.44323 -14.21357 -13.94957 -13.65348 -13.50875 -13.20396 -13.03576 -12.73795 -12.62609 -12.55516 -12.40758 -12.01131 -11.62881 -11.53547 -11.41298 -11.24492 -11.04867 -10.94052 -10.76694 -10.45109 -10.30637 -9.88442 -9.50904 -9.12934 -8.90866 -8.66717 -8.10208 -8.05283 -8.00831 -7.15203 -6.90268 -4.66284 1.08213 1.42496 1.56394 1.98280 2.72340 2.85914 2.98492 3.01968 3.20106 3.79831 3.81460 4.21645 4.66117 4.76412 4.94512 4.96478 5.12353 5.15114 5.20867 5.35746 5.47679 5.51568 5.62364 5.63666 5.71142 5.83405 5.94612 5.98153 6.02113 6.07244 6.13277 6.30948 6.42866 6.50462 6.54983 6.58920 6.65065 6.77132 6.77935 6.92640 6.96082 7.03427 7.04615 7.20936 7.29345 7.41023 7.47503 7.79276 8.03770 8.37237 8.65239 8.67358 9.51741 9.99295 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.020387 B = 0.003193 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.118322 B = 8766.437982 C = 9901.402670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.085 4.085 3 C -0.125 4.125 4 C -0.098 4.098 5 C -0.015 4.015 6 C 0.135 3.865 7 C -0.188 4.188 8 C 0.124 3.876 9 C -0.454 4.454 10 H 0.083 0.917 11 C 0.077 3.923 12 N -0.785 5.785 13 Si 0.912 3.088 14 H -0.266 1.266 15 H -0.276 1.276 16 H -0.260 1.260 17 C -0.273 4.273 18 C 0.104 3.896 19 N -0.565 5.565 20 C -0.073 4.073 21 C -0.069 4.069 22 C -0.027 4.027 23 C -0.108 4.108 24 C -0.123 4.123 25 C -0.127 4.127 26 C -0.120 4.120 27 C -0.107 4.107 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.284 0.716 35 H 0.101 0.899 36 H 0.122 0.878 37 H 0.133 0.867 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.006 -6.628 -1.621 14.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.116 4.116 5 C -0.016 4.016 6 C 0.005 3.995 7 C -0.211 4.211 8 C 0.116 3.884 9 C -0.485 4.485 10 H 0.101 0.899 11 C -0.142 4.142 12 N -0.410 5.410 13 Si 0.736 3.264 14 H -0.191 1.191 15 H -0.201 1.201 16 H -0.184 1.184 17 C -0.296 4.296 18 C -0.052 4.052 19 N -0.280 5.280 20 C -0.092 4.092 21 C -0.069 4.069 22 C -0.027 4.027 23 C -0.126 4.126 24 C -0.141 4.141 25 C -0.146 4.146 26 C -0.138 4.138 27 C -0.125 4.125 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.095 0.905 35 H 0.120 0.880 36 H 0.140 0.860 37 H 0.151 0.849 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.649 -7.276 -1.475 15.537 hybrid contribution 1.029 1.618 -0.010 1.918 sum -12.620 -5.658 -1.485 13.910 Atomic orbital electron populations 1.20840 0.91769 1.02389 1.01760 1.19800 0.95378 0.92271 1.01078 1.20784 0.93945 0.96935 1.02593 1.21436 0.93677 0.98379 0.98145 1.18713 0.91883 0.92575 0.98383 1.19253 0.90882 0.89900 0.99483 1.22270 0.94967 0.97158 1.06689 1.17790 0.91809 0.92406 0.86367 1.19634 1.00652 0.91838 1.36339 0.89910 1.25986 0.94347 1.01666 0.92242 1.69763 1.17863 1.30998 1.22358 0.86227 0.80654 0.80398 0.79113 1.19114 1.20066 1.18403 1.21918 0.98981 0.93601 1.15131 1.21813 0.89556 0.96729 0.97062 1.67242 1.09511 1.28648 1.22603 1.21325 0.91808 0.98685 0.97372 1.18548 0.92840 0.91203 1.04341 1.18815 0.95341 0.93160 0.95424 1.21275 0.95656 0.97396 0.98312 1.21048 1.00088 0.93818 0.99184 1.21134 0.98206 0.99052 0.96160 1.21074 0.96462 0.97195 0.99103 1.21318 0.99562 0.92998 0.98605 0.91609 0.91993 0.91561 0.86244 0.85073 0.84992 0.90474 0.88036 0.86026 0.84942 0.85921 0.86237 0.86427 0.86137 0.85747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 8.46 36.00 0.30 -0.99 16 2 C -0.09 -1.29 5.88 -104.23 -0.61 -1.90 16 3 C -0.12 -1.99 9.67 -39.68 -0.38 -2.38 16 4 C -0.10 -1.86 9.41 -39.19 -0.37 -2.23 16 5 C -0.01 -0.31 5.87 -104.95 -0.62 -0.93 16 6 C 0.13 3.28 6.73 -83.04 -0.56 2.72 16 7 C -0.19 -4.82 8.14 -38.35 -0.31 -5.13 16 8 C 0.12 3.25 5.61 -106.55 -0.60 2.65 16 9 C -0.45 -11.58 9.12 -37.65 -0.34 -11.92 16 10 H 0.08 2.02 7.90 -52.48 -0.41 1.61 16 11 C 0.08 1.85 5.20 -17.34 -0.09 1.76 16 12 N -0.78 -19.24 10.91 55.55 0.61 -18.64 16 13 Si 0.91 17.79 29.59 -169.99 -5.03 12.76 16 14 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 15 H -0.28 -5.27 7.11 56.52 0.40 -4.86 16 16 H -0.26 -5.04 7.11 56.52 0.40 -4.63 16 17 C -0.27 -6.61 9.90 -38.66 -0.38 -6.99 16 18 C 0.10 2.39 11.15 -17.69 -0.20 2.20 16 19 N -0.57 -13.63 9.39 -9.94 -0.09 -13.73 16 20 C -0.07 -1.40 9.03 -38.91 -0.35 -1.75 16 21 C -0.07 -1.14 5.47 -104.94 -0.57 -1.71 16 22 C -0.03 -0.39 4.69 -104.89 -0.49 -0.88 16 23 C -0.11 -1.35 7.92 -39.25 -0.31 -1.66 16 24 C -0.12 -1.32 10.04 -39.63 -0.40 -1.72 16 25 C -0.13 -1.33 10.04 -39.52 -0.40 -1.72 16 26 C -0.12 -1.36 10.03 -39.63 -0.40 -1.76 16 27 C -0.11 -1.43 9.51 -39.25 -0.37 -1.81 16 28 H 0.07 0.68 7.51 -51.93 -0.39 0.29 16 29 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 30 H 0.07 0.77 6.46 -51.93 -0.34 0.43 16 31 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.13 2.56 6.16 -52.49 -0.32 2.24 16 33 H 0.13 3.35 4.30 -52.48 -0.23 3.13 16 34 H 0.28 6.29 8.29 -40.82 -0.34 5.95 16 35 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 36 H 0.12 2.38 8.06 -52.49 -0.42 1.95 16 37 H 0.13 2.60 7.51 -52.49 -0.39 2.21 16 38 H 0.12 1.41 6.90 -52.49 -0.36 1.05 16 39 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 42 H 0.12 1.66 8.04 -52.49 -0.42 1.23 16 LS Contribution 352.57 15.07 5.31 5.31 Total: -1.00 -28.00 352.57 -11.61 -39.61 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -4.96 Total: 10.84 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: -7.45 Total: -36.16 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.51 Total: -32.36 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.00 -11.61 -39.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244784497.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.489 kcal (2) G-P(sol) polarization free energy of solvation -27.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds