Wall clock time and date at job start Tue Mar 31 2020 11:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38136 * 119.93515 * 2 1 4 4 C 1.38080 * 120.24349 * 180.32142 * 3 2 1 5 5 C 1.39432 * 120.12619 * 359.67863 * 4 3 2 6 6 C 1.48379 * 120.06552 * 179.97438 * 5 4 3 7 7 C 1.38891 * 119.60806 * 359.75356 * 6 5 4 8 8 C 1.40849 * 118.76082 * 179.73643 * 7 6 5 9 9 C 1.41530 * 120.98803 * 180.25689 * 8 7 6 10 10 H 1.08003 * 119.99970 * 203.56213 * 9 8 7 11 11 C 1.40040 * 119.99903 * 23.56267 * 9 8 7 12 12 N 1.30733 * 120.00210 * 17.00921 * 11 9 8 13 13 Si 1.86803 * 120.00032 * 197.00814 * 11 9 8 14 14 H 1.48499 * 109.47071 * 94.63994 * 13 11 9 15 15 H 1.48497 * 109.47211 * 214.64164 * 13 11 9 16 16 H 1.48503 * 109.46951 * 334.64464 * 13 11 9 17 17 C 1.41140 * 118.02775 * 0.52285 * 8 7 6 18 18 C 1.37747 * 119.06815 * 359.72906 * 17 8 7 19 19 N 1.31924 * 121.15296 * 0.02562 * 18 17 8 20 20 C 1.39133 * 119.87461 * 0.02562 * 5 4 3 21 21 C 1.39153 * 119.75104 * 359.97438 * 20 5 4 22 22 C 1.48407 * 120.06073 * 180.02562 * 21 20 5 23 23 C 1.39332 * 120.11778 * 129.72835 * 22 21 20 24 24 C 1.38028 * 119.87770 * 179.76876 * 23 22 21 25 25 C 1.38323 * 120.11481 * 0.52948 * 24 23 22 26 26 C 1.38317 * 120.24612 * 359.69993 * 25 24 23 27 27 C 1.38020 * 120.12184 * 0.04035 * 26 25 24 28 28 H 1.09004 * 109.47027 * 270.27660 * 1 2 3 29 29 H 1.08994 * 109.47424 * 30.27516 * 1 2 3 30 30 H 1.09002 * 109.47119 * 150.28377 * 1 2 3 31 31 H 1.07994 * 119.87746 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.93096 * 179.69715 * 4 3 2 33 33 H 1.08005 * 120.62192 * 359.97438 * 7 6 5 34 34 H 0.97000 * 119.99857 * 180.02562 * 12 11 9 35 35 H 1.07999 * 120.46905 * 179.75976 * 17 8 7 36 36 H 1.08001 * 119.42252 * 180.02562 * 18 17 8 37 37 H 1.08002 * 120.12893 * 180.02562 * 20 5 4 38 38 H 1.07996 * 120.06509 * 0.02562 * 23 22 21 39 39 H 1.07989 * 119.94228 * 180.22617 * 24 23 22 40 40 H 1.07999 * 119.87550 * 179.71858 * 25 24 23 41 41 H 1.07999 * 119.93855 * 180.02562 * 26 25 24 42 42 H 1.07999 * 120.06233 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1963 1.1971 0.0000 4 6 3.5770 1.2045 -0.0067 5 6 4.2833 0.0023 -0.0067 6 6 5.7671 0.0119 -0.0145 7 6 6.4454 1.2238 -0.0269 8 6 7.8539 1.2121 -0.0285 9 6 8.5926 2.4193 -0.0354 10 1 9.6053 2.4305 -0.4106 11 6 8.0104 3.5993 0.4440 12 7 6.9395 3.5428 1.1918 13 14 8.7639 5.2539 0.0151 14 1 8.0824 5.8133 -1.1798 15 1 8.5988 6.1847 1.1603 16 1 10.2095 5.0788 -0.2762 17 6 8.5067 -0.0392 -0.0286 18 6 7.7489 -1.1895 -0.0215 19 7 6.4306 -1.1382 -0.0152 20 6 3.5942 -1.2063 -0.0005 21 6 2.2027 -1.2078 0.0062 22 6 1.4607 -2.4930 0.0134 23 6 0.4485 -2.7107 0.9458 24 6 -0.2417 -3.9061 0.9450 25 6 0.0774 -4.8911 0.0277 26 6 1.0845 -4.6821 -0.8970 27 6 1.7775 -3.4885 -0.9086 28 1 -0.3633 0.0050 1.0277 29 1 -0.3634 0.8874 -0.5181 30 1 -0.3633 -0.8925 -0.5094 31 1 1.6532 2.1306 0.0004 32 1 4.1108 2.1433 -0.0116 33 1 5.9031 2.1578 -0.0314 34 1 6.5361 4.3602 1.5236 35 1 9.5853 -0.0942 -0.0337 36 1 8.2425 -2.1501 -0.0212 37 1 4.1372 -2.1399 -0.0001 38 1 0.2016 -1.9441 1.6652 39 1 -1.0288 -4.0745 1.6648 40 1 -0.4620 -5.8267 0.0335 41 1 1.3293 -5.4544 -1.6112 42 1 2.5634 -3.3262 -1.6313 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244784497.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:18 Heat of formation + Delta-G solvation = 49.117784 kcal Electronic energy + Delta-G solvation = -24178.406360 eV Core-core repulsion = 20858.236945 eV Total energy + Delta-G solvation = -3320.169415 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.09801 -40.15453 -38.99041 -36.08637 -34.67548 -33.31147 -32.52313 -31.84300 -31.03034 -29.99964 -27.96451 -27.40693 -24.62854 -23.69711 -23.31913 -23.22498 -22.11035 -21.09270 -19.42410 -17.97258 -17.42897 -16.93917 -16.57007 -16.53895 -15.90463 -15.86193 -15.74606 -15.42253 -14.94333 -14.73192 -14.47248 -14.36210 -14.19844 -14.04999 -13.93353 -13.55485 -13.25296 -13.10307 -12.92706 -12.83590 -12.69566 -12.47338 -12.23953 -11.96960 -11.91926 -11.69930 -11.61930 -11.29251 -10.37133 -10.13536 -9.99785 -9.90966 -9.80367 -9.25620 -8.83247 -8.68399 -6.60469 -0.13980 0.14449 0.53180 0.75452 0.95267 1.15754 1.36846 1.50980 1.55439 2.15600 2.60395 2.86629 3.00989 3.58854 3.65317 3.74250 3.94422 4.04130 4.11570 4.17407 4.25571 4.30736 4.39386 4.50980 4.60672 4.70704 4.76459 4.80722 4.81460 4.85018 4.93331 4.96328 5.05633 5.15224 5.17710 5.19229 5.25960 5.32917 5.47963 5.50144 5.58174 5.59410 5.63960 5.74383 5.79658 5.90283 6.06478 6.13617 6.17060 6.47569 6.75196 6.76054 7.64596 8.20667 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.020387 B = 0.003193 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.118322 B = 8766.437982 C = 9901.402670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.075 4.075 3 C -0.119 4.119 4 C -0.111 4.111 5 C -0.052 4.052 6 C 0.131 3.869 7 C -0.216 4.216 8 C 0.094 3.906 9 C -0.485 4.485 10 H 0.084 0.916 11 C 0.038 3.962 12 N -0.811 5.811 13 Si 0.988 3.012 14 H -0.260 1.260 15 H -0.265 1.265 16 H -0.257 1.257 17 C -0.292 4.292 18 C 0.101 3.899 19 N -0.578 5.578 20 C -0.083 4.083 21 C -0.065 4.065 22 C -0.053 4.053 23 C -0.112 4.112 24 C -0.121 4.121 25 C -0.121 4.121 26 C -0.124 4.124 27 C -0.125 4.125 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.152 0.848 32 H 0.116 0.884 33 H 0.125 0.875 34 H 0.294 0.706 35 H 0.115 0.885 36 H 0.157 0.843 37 H 0.117 0.883 38 H 0.132 0.868 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.141 0.859 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.841 -7.026 -1.340 17.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.075 4.075 3 C -0.137 4.137 4 C -0.130 4.130 5 C -0.053 4.053 6 C 0.001 3.999 7 C -0.239 4.239 8 C 0.087 3.913 9 C -0.515 4.515 10 H 0.102 0.898 11 C -0.180 4.180 12 N -0.436 5.436 13 Si 0.808 3.192 14 H -0.185 1.185 15 H -0.189 1.189 16 H -0.180 1.180 17 C -0.315 4.315 18 C -0.054 4.054 19 N -0.293 5.293 20 C -0.102 4.102 21 C -0.065 4.065 22 C -0.053 4.053 23 C -0.130 4.130 24 C -0.138 4.138 25 C -0.139 4.139 26 C -0.142 4.142 27 C -0.144 4.144 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.170 0.830 32 H 0.134 0.866 33 H 0.143 0.857 34 H 0.105 0.895 35 H 0.134 0.866 36 H 0.174 0.826 37 H 0.135 0.865 38 H 0.150 0.850 39 H 0.168 0.832 40 H 0.167 0.833 41 H 0.159 0.841 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -16.485 -7.695 -1.191 18.232 hybrid contribution 1.747 1.586 -0.072 2.361 sum -14.739 -6.109 -1.263 16.004 Atomic orbital electron populations 1.20908 0.88486 1.03571 1.03382 1.20287 0.97637 0.91263 0.98346 1.21111 0.92595 0.98822 1.01149 1.21409 0.95167 0.97024 0.99355 1.18746 0.90508 0.94252 1.01760 1.19753 0.92780 0.89550 0.97842 1.22271 0.95043 0.97475 1.09083 1.18235 0.92526 0.93653 0.86920 1.19915 1.01087 0.92861 1.37653 0.89759 1.26883 0.94640 1.05030 0.91407 1.69814 1.18755 1.32567 1.22475 0.85097 0.79707 0.75295 0.79097 1.18494 1.18904 1.18015 1.22140 0.99841 0.93517 1.16006 1.22371 0.89427 0.97957 0.95646 1.67375 1.10042 1.28633 1.23260 1.21234 0.93242 0.97235 0.98482 1.18813 0.91797 0.93207 1.02694 1.18794 0.96722 0.92531 0.97257 1.21416 0.95160 0.98593 0.97852 1.21423 1.00118 0.92859 0.99444 1.21556 0.97323 1.00113 0.94910 1.21348 0.96337 0.96683 0.99816 1.21366 1.00067 0.94093 0.98838 0.89552 0.90067 0.91143 0.83050 0.86580 0.85717 0.89527 0.86646 0.82577 0.86475 0.85049 0.83208 0.83292 0.84146 0.87075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.14 8.46 71.23 0.60 -1.54 16 2 C -0.08 -2.17 5.88 -19.61 -0.12 -2.29 16 3 C -0.12 -3.73 9.67 22.21 0.21 -3.51 16 4 C -0.11 -4.42 9.41 22.52 0.21 -4.21 16 5 C -0.05 -2.33 5.87 -20.07 -0.12 -2.44 16 6 C 0.13 6.78 6.73 41.86 0.28 7.06 16 7 C -0.22 -11.81 8.14 23.07 0.19 -11.62 16 8 C 0.09 5.22 5.61 -21.12 -0.12 5.10 16 9 C -0.48 -25.80 9.12 23.52 0.21 -25.59 16 10 H 0.08 4.28 7.90 -2.91 -0.02 4.26 16 11 C 0.04 1.86 5.20 85.29 0.44 2.30 16 12 N -0.81 -41.15 10.91 21.84 0.24 -40.91 16 13 Si 0.99 36.76 29.59 68.60 2.03 38.79 16 14 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 15 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 16 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 17 C -0.29 -14.76 9.90 22.87 0.23 -14.53 16 18 C 0.10 4.81 11.15 84.56 0.94 5.75 16 19 N -0.58 -29.28 9.39 -185.36 -1.74 -31.02 16 20 C -0.08 -3.35 9.03 22.70 0.20 -3.14 16 21 C -0.07 -2.14 5.47 -20.07 -0.11 -2.25 16 22 C -0.05 -1.47 4.69 -20.04 -0.09 -1.57 16 23 C -0.11 -2.51 7.92 22.48 0.18 -2.33 16 24 C -0.12 -2.13 10.04 22.24 0.22 -1.90 16 25 C -0.12 -2.07 10.04 22.31 0.22 -1.85 16 26 C -0.12 -2.54 10.03 22.24 0.22 -2.32 16 27 C -0.13 -3.32 9.51 22.48 0.21 -3.11 16 28 H 0.09 1.44 7.51 -2.39 -0.02 1.42 16 29 H 0.08 1.35 8.09 -2.39 -0.02 1.33 16 30 H 0.07 1.40 6.46 -2.39 -0.02 1.38 16 31 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 32 H 0.12 4.89 6.16 -2.91 -0.02 4.87 16 33 H 0.13 6.83 4.30 -2.91 -0.01 6.81 16 34 H 0.29 13.29 8.29 -92.71 -0.77 12.52 16 35 H 0.12 5.30 8.06 -2.91 -0.02 5.28 16 36 H 0.16 6.12 8.06 -2.91 -0.02 6.10 16 37 H 0.12 4.94 7.51 -2.91 -0.02 4.92 16 38 H 0.13 2.63 6.90 -2.91 -0.02 2.61 16 39 H 0.15 1.73 8.06 -2.92 -0.02 1.71 16 40 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 41 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 42 H 0.11 3.11 8.04 -2.91 -0.02 3.09 16 Total: -1.00 -64.85 352.57 5.60 -59.25 By element: Atomic # 1 Polarization: 36.85 SS G_CDS: 1.04 Total: 37.89 kcal Atomic # 6 Polarization: -68.02 SS G_CDS: 4.04 Total: -63.99 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -1.50 Total: -71.93 kcal Atomic # 14 Polarization: 36.76 SS G_CDS: 2.03 Total: 38.79 kcal Total: -64.85 5.60 -59.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244784497.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.363 kcal (2) G-P(sol) polarization free energy of solvation -64.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds