Wall clock time and date at job start Tue Mar 31 2020 11:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38200 * 119.90999 * 2 1 4 4 C 1.37985 * 120.28002 * 180.02562 * 3 2 1 5 5 C 1.39758 * 120.08974 * 359.97438 * 4 3 2 6 6 C 1.47838 * 120.09267 * 180.02562 * 5 4 3 7 7 N 1.32574 * 119.99446 * 134.95557 * 6 5 4 8 8 C 1.31744 * 121.72062 * 179.97438 * 7 6 5 9 9 C 1.38872 * 121.50543 * 359.97438 * 8 7 6 10 10 C 1.36885 * 119.79890 * 0.02562 * 9 8 7 11 11 C 1.41130 * 118.39110 * 0.02785 * 10 9 8 12 12 C 1.40894 * 120.71584 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00119 * 149.02907 * 12 11 10 14 14 C 1.40078 * 119.99722 * 329.02500 * 12 11 10 15 15 N 1.30769 * 119.99280 * 164.40763 * 14 12 11 16 16 Si 1.86797 * 120.00185 * 344.41274 * 14 12 11 17 17 H 1.48500 * 109.47240 * 93.32861 * 16 14 12 18 18 H 1.48504 * 109.46800 * 213.33009 * 16 14 12 19 19 H 1.48502 * 109.47174 * 333.32625 * 16 14 12 20 20 C 1.39466 * 119.81636 * 0.26728 * 5 4 3 21 21 C 1.39058 * 119.72009 * 359.45943 * 20 5 4 22 22 C 1.48410 * 120.04563 * 180.25103 * 21 20 5 23 23 C 1.39327 * 120.12103 * 55.12003 * 22 21 20 24 24 C 1.38017 * 119.87673 * 179.72117 * 23 22 21 25 25 C 1.38326 * 120.12201 * 0.57922 * 24 23 22 26 26 C 1.38325 * 120.23780 * 359.67653 * 25 24 23 27 27 C 1.38016 * 120.12211 * 0.04223 * 26 25 24 28 28 H 1.08999 * 109.47667 * 95.05788 * 1 2 3 29 29 H 1.08998 * 109.47563 * 215.06188 * 1 2 3 30 30 H 1.09005 * 109.47043 * 335.05736 * 1 2 3 31 31 H 1.07989 * 119.86062 * 0.02562 * 3 2 1 32 32 H 1.07993 * 119.95534 * 179.97438 * 4 3 2 33 33 H 1.08000 * 119.24521 * 180.02562 * 8 7 6 34 34 H 1.07996 * 120.10279 * 179.75171 * 9 8 7 35 35 H 1.07996 * 120.80586 * 179.97438 * 10 9 8 36 36 H 0.97005 * 119.99815 * 179.97438 * 15 14 12 37 37 H 1.07996 * 120.13499 * 179.73176 * 20 5 4 38 38 H 1.07997 * 120.06092 * 359.97438 * 23 22 21 39 39 H 1.08005 * 119.94201 * 180.27795 * 24 23 22 40 40 H 1.07996 * 119.88213 * 179.69545 * 25 24 23 41 41 H 1.08004 * 119.93572 * 180.02562 * 26 25 24 42 42 H 1.07998 * 120.06187 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1960 1.1979 0.0000 4 6 3.5759 1.2068 -0.0005 5 6 4.2843 0.0022 -0.0005 6 6 5.7627 0.0116 -0.0005 7 7 6.4306 -0.7954 0.8120 8 6 7.7476 -0.8153 0.8397 9 6 8.5034 0.0095 0.0169 10 6 7.8771 0.8675 -0.8464 11 6 6.4661 0.8844 -0.8700 12 6 5.7712 1.7485 -1.7391 13 1 4.8088 1.4580 -2.1339 14 6 6.3285 2.9846 -2.0911 15 7 5.8539 3.6484 -3.1129 16 14 7.7495 3.6843 -1.1010 17 1 9.0345 3.2862 -1.7299 18 1 7.6505 5.1658 -1.0721 19 1 7.6931 3.1574 0.2863 20 6 3.5928 -1.2090 -0.0056 21 6 2.2023 -1.2089 0.0007 22 6 1.4592 -2.4936 0.0010 23 6 1.7101 -3.4463 0.9861 24 6 1.0120 -4.6369 0.9849 25 6 0.0732 -4.8901 0.0011 26 6 -0.1761 -3.9500 -0.9825 27 6 0.5121 -2.7536 -0.9874 28 1 -0.3634 -0.0906 -1.0236 29 1 -0.3634 -0.8411 0.5903 30 1 -0.3633 0.9319 0.4334 31 1 1.6523 2.1310 0.0004 32 1 4.1090 2.1460 -0.0009 33 1 8.2509 -1.4891 1.5172 34 1 9.5820 -0.0226 0.0612 35 1 8.4488 1.5164 -1.4932 36 1 6.2395 4.5046 -3.3564 37 1 4.1351 -2.1429 -0.0100 38 1 2.4466 -3.2518 1.7517 39 1 1.2025 -5.3743 1.7507 40 1 -0.4673 -5.8251 0.0010 41 1 -0.9104 -4.1526 -1.7481 42 1 0.3164 -2.0201 -1.7556 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244784573.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:22 Heat of formation + Delta-G solvation = 63.201504 kcal Electronic energy + Delta-G solvation = -24662.439843 eV Core-core repulsion = 21342.881144 eV Total energy + Delta-G solvation = -3319.558699 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.71943 -38.81909 -37.64215 -34.16021 -33.20362 -31.99276 -31.41652 -30.83990 -29.96924 -28.70346 -26.64298 -25.27297 -23.21994 -22.39130 -22.23116 -21.41453 -20.88161 -19.69356 -17.61395 -17.08475 -16.18182 -15.65160 -15.19413 -15.00979 -14.74013 -14.68762 -14.26267 -13.89997 -13.56561 -13.50311 -13.17183 -12.96649 -12.84276 -12.67658 -12.44364 -12.24625 -12.02965 -11.86578 -11.50307 -11.42974 -11.38389 -11.00120 -10.87266 -10.76745 -10.35370 -10.31140 -9.95664 -9.59678 -8.93463 -8.84447 -8.65695 -8.33150 -8.19300 -7.89495 -7.41394 -7.16068 -4.67424 1.23510 1.49699 1.73243 2.13195 2.41947 2.64549 2.94711 3.05877 3.15233 3.78207 3.88520 4.32872 4.44395 4.87431 5.02854 5.02919 5.20772 5.24958 5.30544 5.38914 5.48944 5.56191 5.64400 5.74396 5.84632 5.91258 5.96755 6.05190 6.09678 6.12521 6.14918 6.21697 6.30626 6.42464 6.50197 6.56935 6.59989 6.70833 6.75230 6.76089 6.89694 7.05159 7.15042 7.18606 7.24035 7.40873 7.50520 7.65942 7.71535 8.11133 8.33001 8.51346 9.31026 9.83158 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.017299 B = 0.003946 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.226700 B = 7094.158954 C = 8152.272790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.088 4.088 3 C -0.127 4.127 4 C -0.078 4.078 5 C 0.012 3.988 6 C 0.036 3.964 7 N -0.443 5.443 8 C -0.039 4.039 9 C -0.121 4.121 10 C -0.207 4.207 11 C 0.062 3.938 12 C -0.422 4.422 13 H 0.103 0.897 14 C 0.083 3.917 15 N -0.790 5.790 16 Si 0.908 3.092 17 H -0.267 1.267 18 H -0.286 1.286 19 H -0.245 1.245 20 C -0.085 4.085 21 C -0.071 4.071 22 C -0.024 4.024 23 C -0.109 4.109 24 C -0.121 4.121 25 C -0.129 4.129 26 C -0.123 4.123 27 C -0.108 4.108 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.117 0.883 32 H 0.133 0.867 33 H 0.126 0.874 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.289 0.711 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.489 -7.108 4.251 11.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.088 4.088 3 C -0.145 4.145 4 C -0.097 4.097 5 C 0.012 3.988 6 C -0.105 4.105 7 N -0.150 5.150 8 C -0.198 4.198 9 C -0.142 4.142 10 C -0.232 4.232 11 C 0.057 3.943 12 C -0.450 4.450 13 H 0.121 0.879 14 C -0.138 4.138 15 N -0.413 5.413 16 Si 0.734 3.266 17 H -0.193 1.193 18 H -0.213 1.213 19 H -0.168 1.168 20 C -0.104 4.104 21 C -0.071 4.071 22 C -0.024 4.024 23 C -0.127 4.127 24 C -0.139 4.139 25 C -0.147 4.147 26 C -0.141 4.141 27 C -0.126 4.126 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.135 0.865 32 H 0.151 0.849 33 H 0.144 0.856 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.100 0.900 37 H 0.136 0.864 38 H 0.142 0.858 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.137 0.863 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.971 -7.441 4.600 12.531 hybrid contribution 1.407 0.997 -0.449 1.782 sum -7.564 -6.444 4.152 10.770 Atomic orbital electron populations 1.20773 0.91968 1.02026 1.01681 1.19763 0.95181 0.92243 1.01647 1.20787 0.94139 0.96742 1.02803 1.21461 0.93253 0.98582 0.96364 1.18281 0.90930 0.92287 0.97343 1.19498 0.91317 1.01287 0.98401 1.67077 1.09540 1.18851 1.19531 1.21692 0.89339 1.04385 1.04343 1.21365 0.99144 0.96889 0.96754 1.21152 0.94738 1.03611 1.03706 1.18437 0.91687 0.93010 0.91183 1.19523 1.06016 0.99478 1.20025 0.87914 1.26223 0.96975 0.97055 0.93554 1.69641 1.37804 1.13533 1.20293 0.86365 0.80441 0.77079 0.82749 1.19327 1.21301 1.16775 1.21219 0.91988 0.97791 0.99366 1.18418 0.92674 0.91066 1.04897 1.18838 0.95449 0.93316 0.94775 1.21312 0.99526 0.93329 0.98487 1.21063 0.96863 0.97105 0.98908 1.21118 0.98856 0.99246 0.95523 1.21048 1.00083 0.94098 0.98875 1.21274 0.95978 0.97150 0.98197 0.91748 0.91910 0.92138 0.86474 0.84923 0.85602 0.87775 0.87195 0.89993 0.86365 0.85796 0.86249 0.86511 0.86287 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 8.53 36.00 0.31 -1.09 16 2 C -0.09 -1.45 5.89 -104.18 -0.61 -2.06 16 3 C -0.13 -2.23 9.65 -39.69 -0.38 -2.61 16 4 C -0.08 -1.59 7.93 -39.11 -0.31 -1.90 16 5 C 0.01 0.27 5.22 -104.94 -0.55 -0.28 16 6 C 0.04 0.85 6.41 -82.23 -0.53 0.32 16 7 N -0.44 -10.32 10.17 -9.17 -0.09 -10.41 16 8 C -0.04 -0.84 11.16 -17.35 -0.19 -1.03 16 9 C -0.12 -2.56 10.03 -39.84 -0.40 -2.96 16 10 C -0.21 -4.80 7.20 -38.98 -0.28 -5.08 16 11 C 0.06 1.52 5.09 -106.41 -0.54 0.98 16 12 C -0.42 -10.63 7.22 -37.89 -0.27 -10.90 16 13 H 0.10 2.74 6.86 -52.49 -0.36 2.38 16 14 C 0.08 2.02 5.45 -17.31 -0.09 1.93 16 15 N -0.79 -19.53 13.92 55.55 0.77 -18.76 16 16 Si 0.91 19.45 24.50 -169.99 -4.16 15.29 16 17 H -0.27 -5.56 6.65 56.52 0.38 -5.18 16 18 H -0.29 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.24 -5.46 6.84 56.52 0.39 -5.07 16 20 C -0.08 -1.68 9.22 -38.82 -0.36 -2.04 16 21 C -0.07 -1.22 5.41 -104.95 -0.57 -1.79 16 22 C -0.02 -0.36 4.53 -104.90 -0.48 -0.83 16 23 C -0.11 -1.52 9.60 -39.26 -0.38 -1.89 16 24 C -0.12 -1.44 10.03 -39.63 -0.40 -1.83 16 25 C -0.13 -1.43 10.04 -39.52 -0.40 -1.82 16 26 C -0.12 -1.41 10.03 -39.63 -0.40 -1.81 16 27 C -0.11 -1.44 8.21 -39.26 -0.32 -1.77 16 28 H 0.06 0.77 7.49 -51.93 -0.39 0.38 16 29 H 0.06 0.79 6.95 -51.93 -0.36 0.43 16 30 H 0.06 0.70 8.05 -51.93 -0.42 0.28 16 31 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.13 2.83 6.86 -52.49 -0.36 2.47 16 33 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 34 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 35 H 0.11 2.48 4.73 -52.49 -0.25 2.24 16 36 H 0.29 6.47 8.30 -40.82 -0.34 6.13 16 37 H 0.12 2.36 8.06 -52.49 -0.42 1.93 16 38 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 39 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 40 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 42 H 0.12 1.56 7.21 -52.49 -0.38 1.18 16 LS Contribution 346.95 15.07 5.23 5.23 Total: -1.00 -27.10 346.95 -10.48 -37.58 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -5.07 Total: 9.54 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: -7.15 Total: -38.46 kcal Atomic # 7 Polarization: -29.85 SS G_CDS: 0.68 Total: -29.17 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.16 Total: 15.29 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.10 -10.48 -37.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244784573.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.777 kcal (2) G-P(sol) polarization free energy of solvation -27.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds