Wall clock time and date at job start Tue Mar 31 2020 11:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38124 * 119.93694 * 2 1 4 4 C 1.38082 * 120.24859 * 180.02562 * 3 2 1 5 5 C 1.39418 * 120.12101 * 0.02562 * 4 3 2 6 6 C 1.48433 * 120.06058 * 180.02562 * 5 4 3 7 7 C 1.39694 * 120.41037 * 179.72433 * 6 5 4 8 8 N 1.31913 * 121.15174 * 179.76790 * 7 6 5 9 9 C 1.31523 * 122.11717 * 0.49726 * 8 7 6 10 10 C 1.40764 * 120.66619 * 359.76927 * 9 8 7 11 11 C 1.41441 * 120.60321 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99499 * 155.58628 * 11 10 9 13 13 C 1.39932 * 120.00449 * 335.58300 * 11 10 9 14 14 N 1.30837 * 119.99692 * 342.36016 * 13 11 10 15 15 Si 1.86797 * 120.00066 * 162.35396 * 13 11 10 16 16 H 1.48500 * 109.47126 * 94.67895 * 15 13 11 17 17 H 1.48501 * 109.46861 * 214.67420 * 15 13 11 18 18 H 1.48494 * 109.47224 * 334.67876 * 15 13 11 19 19 C 1.39136 * 120.40693 * 0.02562 * 6 5 4 20 20 C 1.39104 * 119.87966 * 359.70051 * 5 4 3 21 21 C 1.39165 * 119.75240 * 0.55131 * 20 5 4 22 22 C 1.48403 * 120.06089 * 179.75061 * 21 20 5 23 23 C 1.39341 * 120.12070 * 309.71780 * 22 21 20 24 24 C 1.38015 * 119.87961 * 180.02562 * 23 22 21 25 25 C 1.38321 * 120.12047 * 0.28025 * 24 23 22 26 26 C 1.38325 * 120.24351 * 359.44255 * 25 24 23 27 27 C 1.38018 * 120.11721 * 0.55456 * 26 25 24 28 28 H 1.08997 * 109.47172 * 269.97384 * 1 2 3 29 29 H 1.09003 * 109.47003 * 29.97992 * 1 2 3 30 30 H 1.09005 * 109.46674 * 149.97495 * 1 2 3 31 31 H 1.07997 * 119.87902 * 0.04588 * 3 2 1 32 32 H 1.08001 * 119.94301 * 180.02562 * 4 3 2 33 33 H 1.08004 * 119.42380 * 0.02562 * 7 6 5 34 34 H 1.08000 * 119.66354 * 179.74822 * 9 8 7 35 35 H 0.96993 * 119.99629 * 179.97438 * 14 13 11 36 36 H 1.07996 * 120.95223 * 359.97438 * 19 6 5 37 37 H 1.07999 * 120.12522 * 180.29666 * 20 5 4 38 38 H 1.08006 * 120.05689 * 0.04481 * 23 22 21 39 39 H 1.07996 * 119.94004 * 179.97438 * 24 23 22 40 40 H 1.08000 * 119.87547 * 179.72394 * 25 24 23 41 41 H 1.07993 * 119.94126 * 180.25842 * 26 25 24 42 42 H 1.07995 * 120.06429 * 179.74184 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1969 0.0000 4 6 3.5771 1.2045 -0.0005 5 6 4.2833 0.0024 -0.0016 6 6 5.7676 0.0120 -0.0016 7 6 6.4825 -1.1881 0.0031 8 7 7.8016 -1.1967 -0.0014 9 6 8.5080 -0.0873 -0.0008 10 6 7.8724 1.1687 -0.0002 11 6 8.6334 2.3609 0.0010 12 1 8.2061 3.2746 -0.3851 13 6 9.9398 2.3567 0.5025 14 7 10.3419 1.3779 1.2719 15 14 11.1095 3.7483 0.0731 16 1 11.0723 4.7749 1.1455 17 1 12.4893 3.2140 -0.0528 18 1 10.6969 4.3623 -1.2145 19 6 6.4640 1.2165 0.0000 20 6 3.5944 -1.2061 0.0041 21 6 2.2027 -1.2077 -0.0007 22 6 1.4608 -2.4930 -0.0002 23 6 1.7815 -3.4858 -0.9238 24 6 1.0879 -4.6790 -0.9192 25 6 0.0723 -4.8881 -0.0037 26 6 -0.2464 -3.9082 0.9191 27 6 0.4407 -2.7112 0.9235 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5143 31 1 1.6533 2.1305 0.0007 32 1 4.1111 2.1432 -0.0001 33 1 5.9459 -2.1254 0.0063 34 1 9.5867 -0.1405 -0.0005 35 1 11.2475 1.3748 1.6192 36 1 5.9402 2.1610 0.0009 37 1 4.1374 -2.1396 0.0082 38 1 2.5716 -3.3219 -1.6417 39 1 1.3354 -5.4490 -1.6349 40 1 -0.4708 -5.8216 -0.0066 41 1 -1.0375 -4.0782 1.6343 42 1 0.1883 -1.9451 1.6417 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244785828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:41 Heat of formation + Delta-G solvation = 59.331104 kcal Electronic energy + Delta-G solvation = -23913.525192 eV Core-core repulsion = 20593.798660 eV Total energy + Delta-G solvation = -3319.726532 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.99080 -38.71677 -37.77057 -34.24526 -33.50784 -32.27260 -31.09874 -30.79548 -29.59483 -28.97116 -26.12644 -25.70198 -23.50526 -22.60919 -22.09416 -21.82377 -20.59968 -19.84949 -17.65956 -16.78664 -16.17402 -15.72733 -15.53773 -15.15617 -14.80227 -14.72285 -14.37842 -13.99786 -13.74574 -13.36556 -13.31393 -13.20767 -12.76522 -12.70218 -12.60117 -12.17525 -11.90635 -11.81377 -11.59093 -11.34668 -11.30119 -11.13197 -11.04305 -10.83866 -10.77486 -10.48097 -10.12061 -9.43931 -9.31687 -9.01412 -8.99893 -8.24250 -8.10280 -7.86396 -7.17340 -6.95749 -4.55211 0.95742 1.33006 1.40538 1.82136 2.65170 2.89393 3.00082 3.04031 3.13025 3.72022 3.81591 4.14377 4.58399 4.63062 4.84697 4.88237 5.02592 5.04026 5.07968 5.35338 5.37931 5.40143 5.49371 5.59976 5.63134 5.68008 5.76022 5.87087 5.91071 5.96664 6.05896 6.12945 6.26209 6.37337 6.42104 6.45676 6.48140 6.61618 6.67652 6.69698 6.82306 6.92510 7.00437 7.10705 7.17759 7.30879 7.55455 7.67515 7.99066 8.24299 8.61630 8.65077 9.64387 10.01333 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.024364 B = 0.002763 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.968372 B =10131.517112 C =11018.321961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.091 4.091 3 C -0.118 4.118 4 C -0.110 4.110 5 C -0.012 4.012 6 C -0.084 4.084 7 C -0.025 4.025 8 N -0.477 5.477 9 C 0.050 3.950 10 C 0.062 3.938 11 C -0.451 4.451 12 H 0.082 0.918 13 C 0.075 3.925 14 N -0.788 5.788 15 Si 0.913 3.087 16 H -0.269 1.269 17 H -0.273 1.273 18 H -0.259 1.259 19 C -0.180 4.180 20 C -0.099 4.099 21 C -0.056 4.056 22 C -0.032 4.032 23 C -0.107 4.107 24 C -0.120 4.120 25 C -0.125 4.125 26 C -0.123 4.123 27 C -0.107 4.107 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.151 0.849 35 H 0.286 0.714 36 H 0.106 0.894 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.992 -4.835 -1.751 17.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.091 4.091 3 C -0.136 4.136 4 C -0.128 4.128 5 C -0.013 4.013 6 C -0.086 4.086 7 C -0.179 4.179 8 N -0.185 5.185 9 C -0.114 4.114 10 C 0.058 3.942 11 C -0.481 4.481 12 H 0.100 0.900 13 C -0.144 4.144 14 N -0.413 5.413 15 Si 0.737 3.263 16 H -0.194 1.194 17 H -0.198 1.198 18 H -0.183 1.183 19 C -0.205 4.205 20 C -0.117 4.117 21 C -0.056 4.056 22 C -0.032 4.032 23 C -0.125 4.125 24 C -0.138 4.138 25 C -0.143 4.143 26 C -0.141 4.141 27 C -0.125 4.125 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.138 0.862 32 H 0.144 0.856 33 H 0.138 0.862 34 H 0.168 0.832 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.391 -5.737 -1.608 17.441 hybrid contribution 0.215 1.475 0.011 1.490 sum -16.177 -4.262 -1.597 16.805 Atomic orbital electron populations 1.20847 0.91650 1.02484 1.01813 1.19785 0.95486 0.92209 1.01584 1.20822 0.94019 0.97002 1.01722 1.21356 0.93672 0.98220 0.99563 1.18916 0.92961 0.92485 0.96911 1.19291 0.90358 0.95393 1.03560 1.21846 0.90176 0.95064 1.10857 1.67151 1.07573 1.32867 1.10865 1.23099 0.99663 0.86866 1.01777 1.18482 0.91308 0.94870 0.89588 1.19520 0.97044 0.96048 1.35499 0.90006 1.25980 0.98826 0.97272 0.92361 1.69769 1.19083 1.30779 1.21679 0.86214 0.79157 0.80769 0.80186 1.19424 1.19783 1.18282 1.21402 0.94069 0.95459 1.09609 1.21269 0.92341 0.98085 1.00037 1.18509 0.92671 0.91297 1.03133 1.18813 0.95546 0.93150 0.95731 1.21314 0.99705 0.93018 0.98502 1.21089 0.96332 0.97186 0.99162 1.21162 0.98016 0.99141 0.96019 1.21063 1.00121 0.93789 0.99099 1.21276 0.95532 0.97371 0.98356 0.91565 0.91960 0.91486 0.86230 0.85580 0.86190 0.83162 0.90314 0.87581 0.85619 0.85726 0.86030 0.86324 0.86149 0.85875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 8.44 36.01 0.30 -0.87 16 2 C -0.09 -1.24 5.88 -104.24 -0.61 -1.85 16 3 C -0.12 -1.67 9.67 -39.68 -0.38 -2.06 16 4 C -0.11 -1.85 9.43 -39.20 -0.37 -2.22 16 5 C -0.01 -0.22 5.87 -104.94 -0.62 -0.84 16 6 C -0.08 -1.88 5.88 -104.82 -0.62 -2.49 16 7 C -0.02 -0.58 10.60 -16.97 -0.18 -0.76 16 8 N -0.48 -12.29 10.32 -12.29 -0.13 -12.42 16 9 C 0.05 1.32 9.89 -16.73 -0.17 1.15 16 10 C 0.06 1.62 5.58 -106.71 -0.60 1.02 16 11 C -0.45 -11.45 9.08 -37.73 -0.34 -11.79 16 12 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 13 C 0.07 1.79 5.15 -17.34 -0.09 1.70 16 14 N -0.79 -19.72 10.96 55.55 0.61 -19.11 16 15 Si 0.91 17.82 29.59 -169.99 -5.03 12.79 16 16 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 17 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 18 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 19 C -0.18 -4.29 9.29 -38.23 -0.36 -4.65 16 20 C -0.10 -1.68 8.90 -38.92 -0.35 -2.03 16 21 C -0.06 -0.83 5.47 -104.94 -0.57 -1.40 16 22 C -0.03 -0.42 4.71 -104.89 -0.49 -0.92 16 23 C -0.11 -1.31 9.51 -39.25 -0.37 -1.68 16 24 C -0.12 -1.24 10.03 -39.63 -0.40 -1.64 16 25 C -0.13 -1.20 10.04 -39.52 -0.40 -1.60 16 26 C -0.12 -1.20 10.03 -39.63 -0.40 -1.60 16 27 C -0.11 -1.22 7.90 -39.25 -0.31 -1.53 16 28 H 0.07 0.61 7.49 -51.93 -0.39 0.22 16 29 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 30 H 0.07 0.70 6.44 -51.93 -0.33 0.37 16 31 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 32 H 0.13 2.06 6.25 -52.49 -0.33 1.73 16 33 H 0.12 2.48 6.20 -52.48 -0.33 2.16 16 34 H 0.15 4.07 6.15 -52.49 -0.32 3.75 16 35 H 0.29 6.46 8.30 -40.82 -0.34 6.12 16 36 H 0.11 2.31 6.30 -52.49 -0.33 1.98 16 37 H 0.13 2.07 6.20 -52.49 -0.33 1.74 16 38 H 0.12 1.48 8.04 -52.48 -0.42 1.06 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 41 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.12 1.28 6.84 -52.49 -0.36 0.92 16 LS Contribution 349.99 15.07 5.27 5.27 Total: -1.00 -28.14 349.99 -11.38 -39.53 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -4.80 Total: 9.99 kcal Atomic # 6 Polarization: -28.74 SS G_CDS: -7.31 Total: -36.05 kcal Atomic # 7 Polarization: -32.01 SS G_CDS: 0.48 Total: -31.53 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.14 -11.38 -39.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244785828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.857 kcal (2) G-P(sol) polarization free energy of solvation -28.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds