Wall clock time and date at job start Tue Mar 31 2020 11:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38124 * 119.93694 * 2 1 4 4 C 1.38082 * 120.24859 * 180.02562 * 3 2 1 5 5 C 1.39418 * 120.12101 * 0.02562 * 4 3 2 6 6 C 1.48433 * 120.06058 * 180.02562 * 5 4 3 7 7 C 1.39694 * 120.41037 * 179.72433 * 6 5 4 8 8 N 1.31913 * 121.15174 * 179.76790 * 7 6 5 9 9 C 1.31523 * 122.11717 * 0.49726 * 8 7 6 10 10 C 1.40764 * 120.66619 * 359.76927 * 9 8 7 11 11 C 1.41441 * 120.60321 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99499 * 155.58628 * 11 10 9 13 13 C 1.39932 * 120.00449 * 335.58300 * 11 10 9 14 14 N 1.30837 * 119.99692 * 342.36016 * 13 11 10 15 15 Si 1.86797 * 120.00066 * 162.35396 * 13 11 10 16 16 H 1.48500 * 109.47126 * 94.67895 * 15 13 11 17 17 H 1.48501 * 109.46861 * 214.67420 * 15 13 11 18 18 H 1.48494 * 109.47224 * 334.67876 * 15 13 11 19 19 C 1.39136 * 120.40693 * 0.02562 * 6 5 4 20 20 C 1.39104 * 119.87966 * 359.70051 * 5 4 3 21 21 C 1.39165 * 119.75240 * 0.55131 * 20 5 4 22 22 C 1.48403 * 120.06089 * 179.75061 * 21 20 5 23 23 C 1.39341 * 120.12070 * 309.71780 * 22 21 20 24 24 C 1.38015 * 119.87961 * 180.02562 * 23 22 21 25 25 C 1.38321 * 120.12047 * 0.28025 * 24 23 22 26 26 C 1.38325 * 120.24351 * 359.44255 * 25 24 23 27 27 C 1.38018 * 120.11721 * 0.55456 * 26 25 24 28 28 H 1.08997 * 109.47172 * 269.97384 * 1 2 3 29 29 H 1.09003 * 109.47003 * 29.97992 * 1 2 3 30 30 H 1.09005 * 109.46674 * 149.97495 * 1 2 3 31 31 H 1.07997 * 119.87902 * 0.04588 * 3 2 1 32 32 H 1.08001 * 119.94301 * 180.02562 * 4 3 2 33 33 H 1.08004 * 119.42380 * 0.02562 * 7 6 5 34 34 H 1.08000 * 119.66354 * 179.74822 * 9 8 7 35 35 H 0.96993 * 119.99629 * 179.97438 * 14 13 11 36 36 H 1.07996 * 120.95223 * 359.97438 * 19 6 5 37 37 H 1.07999 * 120.12522 * 180.29666 * 20 5 4 38 38 H 1.08006 * 120.05689 * 0.04481 * 23 22 21 39 39 H 1.07996 * 119.94004 * 179.97438 * 24 23 22 40 40 H 1.08000 * 119.87547 * 179.72394 * 25 24 23 41 41 H 1.07993 * 119.94126 * 180.25842 * 26 25 24 42 42 H 1.07995 * 120.06429 * 179.74184 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1969 0.0000 4 6 3.5771 1.2045 -0.0005 5 6 4.2833 0.0024 -0.0016 6 6 5.7676 0.0120 -0.0016 7 6 6.4825 -1.1881 0.0031 8 7 7.8016 -1.1967 -0.0014 9 6 8.5080 -0.0873 -0.0008 10 6 7.8724 1.1687 -0.0002 11 6 8.6334 2.3609 0.0010 12 1 8.2061 3.2746 -0.3851 13 6 9.9398 2.3567 0.5025 14 7 10.3419 1.3779 1.2719 15 14 11.1095 3.7483 0.0731 16 1 11.0723 4.7749 1.1455 17 1 12.4893 3.2140 -0.0528 18 1 10.6969 4.3623 -1.2145 19 6 6.4640 1.2165 0.0000 20 6 3.5944 -1.2061 0.0041 21 6 2.2027 -1.2077 -0.0007 22 6 1.4608 -2.4930 -0.0002 23 6 1.7815 -3.4858 -0.9238 24 6 1.0879 -4.6790 -0.9192 25 6 0.0723 -4.8881 -0.0037 26 6 -0.2464 -3.9082 0.9191 27 6 0.4407 -2.7112 0.9235 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5143 31 1 1.6533 2.1305 0.0007 32 1 4.1111 2.1432 -0.0001 33 1 5.9459 -2.1254 0.0063 34 1 9.5867 -0.1405 -0.0005 35 1 11.2475 1.3748 1.6192 36 1 5.9402 2.1610 0.0009 37 1 4.1374 -2.1396 0.0082 38 1 2.5716 -3.3219 -1.6417 39 1 1.3354 -5.4490 -1.6349 40 1 -0.4708 -5.8216 -0.0066 41 1 -1.0375 -4.0782 1.6343 42 1 0.1883 -1.9451 1.6417 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244785828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:40 Heat of formation + Delta-G solvation = 48.242314 kcal Electronic energy + Delta-G solvation = -23914.006038 eV Core-core repulsion = 20593.798660 eV Total energy + Delta-G solvation = -3320.207378 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.14696 -40.18924 -39.05036 -36.01002 -34.91235 -33.34214 -32.73171 -31.88305 -31.03692 -30.03745 -27.59791 -27.35381 -24.72678 -23.82324 -23.33178 -23.19988 -22.02607 -21.15319 -19.32973 -17.94430 -17.71311 -17.22077 -16.72337 -16.60242 -16.13143 -15.88622 -15.56596 -15.41213 -14.77813 -14.70359 -14.46026 -14.38362 -14.14913 -14.09355 -13.57758 -13.51538 -13.39246 -13.06177 -12.95749 -12.92725 -12.72114 -12.55742 -12.37549 -12.18782 -11.95460 -11.83962 -11.56998 -11.23773 -10.68293 -10.20198 -10.01692 -9.81397 -9.76015 -9.27589 -8.79593 -8.73713 -6.49964 -0.16776 0.10054 0.52398 0.74273 0.85229 1.23273 1.38794 1.50245 1.56093 2.17087 2.61837 2.83413 2.99770 3.60502 3.69578 3.82112 3.89578 4.00712 4.09162 4.15072 4.25537 4.28410 4.32904 4.42043 4.51181 4.59695 4.68167 4.70801 4.79554 4.83862 4.84673 4.92526 5.07549 5.12868 5.15579 5.18460 5.21358 5.30311 5.44764 5.48804 5.57291 5.58828 5.63712 5.75847 5.79013 5.84585 6.02918 6.11015 6.13459 6.31731 6.71158 6.73536 7.70134 8.21813 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.024364 B = 0.002763 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.968372 B =10131.517112 C =11018.321961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.080 4.080 3 C -0.114 4.114 4 C -0.118 4.118 5 C -0.048 4.048 6 C -0.071 4.071 7 C -0.043 4.043 8 N -0.491 5.491 9 C 0.014 3.986 10 C 0.039 3.961 11 C -0.479 4.479 12 H 0.088 0.912 13 C 0.034 3.966 14 N -0.820 5.820 15 Si 0.991 3.009 16 H -0.260 1.260 17 H -0.265 1.265 18 H -0.255 1.255 19 C -0.195 4.195 20 C -0.105 4.105 21 C -0.057 4.057 22 C -0.055 4.055 23 C -0.125 4.125 24 C -0.125 4.125 25 C -0.122 4.122 26 C -0.122 4.122 27 C -0.112 4.112 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.153 0.847 32 H 0.125 0.875 33 H 0.142 0.858 34 H 0.136 0.864 35 H 0.294 0.706 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.115 0.885 39 H 0.140 0.860 40 H 0.147 0.853 41 H 0.149 0.851 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.191 -4.532 -1.573 20.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.080 4.080 3 C -0.132 4.132 4 C -0.136 4.136 5 C -0.049 4.049 6 C -0.073 4.073 7 C -0.198 4.198 8 N -0.199 5.199 9 C -0.149 4.149 10 C 0.035 3.965 11 C -0.508 4.508 12 H 0.106 0.894 13 C -0.182 4.182 14 N -0.445 5.445 15 Si 0.811 3.189 16 H -0.184 1.184 17 H -0.189 1.189 18 H -0.179 1.179 19 C -0.221 4.221 20 C -0.123 4.123 21 C -0.057 4.057 22 C -0.055 4.055 23 C -0.143 4.143 24 C -0.143 4.143 25 C -0.140 4.140 26 C -0.140 4.140 27 C -0.129 4.129 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.170 0.830 32 H 0.143 0.857 33 H 0.159 0.841 34 H 0.153 0.847 35 H 0.105 0.895 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.133 0.867 39 H 0.158 0.842 40 H 0.165 0.835 41 H 0.166 0.834 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.596 -5.444 -1.427 20.388 hybrid contribution 0.935 1.238 -0.022 1.552 sum -18.661 -4.206 -1.449 19.184 Atomic orbital electron populations 1.20917 0.88784 1.03519 1.03301 1.20272 0.97536 0.91461 0.98780 1.21158 0.92911 0.98717 1.00428 1.21450 0.95034 0.97308 0.99804 1.18809 0.90968 0.94291 1.00796 1.19589 0.92692 0.94389 1.00613 1.22249 0.89654 0.96613 1.11306 1.67067 1.08821 1.32928 1.11090 1.22885 0.99182 0.87611 1.05188 1.18797 0.92591 0.95101 0.90009 1.19830 0.98411 0.96060 1.36531 0.89413 1.26928 0.99913 0.99936 0.91425 1.69832 1.19938 1.32598 1.22140 0.85056 0.76655 0.77227 0.80005 1.18424 1.18945 1.17891 1.21646 0.93555 0.96794 1.10056 1.21279 0.93586 0.97120 1.00349 1.18752 0.91850 0.93030 1.02064 1.18810 0.96761 0.92663 0.97292 1.21390 1.00205 0.93962 0.98774 1.21357 0.96290 0.96833 0.99822 1.21556 0.97306 1.00130 0.94979 1.21420 1.00222 0.92978 0.99346 1.21424 0.95096 0.98433 0.97996 0.89651 0.90116 0.91303 0.82969 0.85737 0.84118 0.84677 0.89465 0.86080 0.86230 0.86652 0.84249 0.83515 0.83369 0.84968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 8.44 71.24 0.60 -1.27 16 2 C -0.08 -2.02 5.88 -19.62 -0.12 -2.13 16 3 C -0.11 -3.00 9.67 22.21 0.21 -2.79 16 4 C -0.12 -3.93 9.43 22.52 0.21 -3.71 16 5 C -0.05 -1.85 5.87 -20.07 -0.12 -1.96 16 6 C -0.07 -3.31 5.88 -19.99 -0.12 -3.43 16 7 C -0.04 -2.11 10.60 85.03 0.90 -1.21 16 8 N -0.49 -26.80 10.32 -192.79 -1.99 -28.79 16 9 C 0.01 0.79 9.89 85.36 0.84 1.63 16 10 C 0.04 2.17 5.58 -21.22 -0.12 2.05 16 11 C -0.48 -25.24 9.08 23.47 0.21 -25.03 16 12 H 0.09 4.35 7.91 -2.91 -0.02 4.32 16 13 C 0.03 1.68 5.15 85.25 0.44 2.12 16 14 N -0.82 -42.56 10.96 21.82 0.24 -42.32 16 15 Si 0.99 36.79 29.59 68.60 2.03 38.82 16 16 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 17 H -0.27 -9.42 7.11 99.48 0.71 -8.71 16 18 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 19 C -0.20 -9.73 9.29 23.14 0.22 -9.51 16 20 C -0.11 -3.62 8.90 22.70 0.20 -3.42 16 21 C -0.06 -1.63 5.47 -20.07 -0.11 -1.74 16 22 C -0.06 -1.36 4.71 -20.04 -0.09 -1.46 16 23 C -0.13 -2.96 9.51 22.48 0.21 -2.75 16 24 C -0.13 -2.34 10.03 22.24 0.22 -2.12 16 25 C -0.12 -1.92 10.04 22.31 0.22 -1.69 16 26 C -0.12 -1.95 10.03 22.24 0.22 -1.73 16 27 C -0.11 -2.23 7.90 22.48 0.18 -2.05 16 28 H 0.09 1.21 7.49 -2.39 -0.02 1.19 16 29 H 0.08 1.13 8.08 -2.39 -0.02 1.11 16 30 H 0.07 1.21 6.44 -2.38 -0.02 1.19 16 31 H 0.15 2.97 8.06 -2.91 -0.02 2.94 16 32 H 0.12 4.08 6.25 -2.91 -0.02 4.06 16 33 H 0.14 6.10 6.20 -2.91 -0.02 6.08 16 34 H 0.14 7.88 6.15 -2.91 -0.02 7.86 16 35 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 36 H 0.12 5.47 6.30 -2.91 -0.02 5.45 16 37 H 0.12 4.11 6.20 -2.91 -0.02 4.09 16 38 H 0.12 2.82 8.04 -2.91 -0.02 2.79 16 39 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 40 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 41 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 42 H 0.13 2.32 6.84 -2.91 -0.02 2.30 16 Total: -1.00 -64.55 349.99 5.56 -58.99 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: 1.05 Total: 35.50 kcal Atomic # 6 Polarization: -66.43 SS G_CDS: 4.23 Total: -62.20 kcal Atomic # 7 Polarization: -69.36 SS G_CDS: -1.75 Total: -71.11 kcal Atomic # 14 Polarization: 36.79 SS G_CDS: 2.03 Total: 38.82 kcal Total: -64.55 5.56 -58.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244785828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.228 kcal (2) G-P(sol) polarization free energy of solvation -64.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds