Wall clock time and date at job start Tue Mar 31 2020 11:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38122 * 119.94040 * 2 1 4 4 C 1.38074 * 120.25185 * 179.97438 * 3 2 1 5 5 C 1.39436 * 120.11952 * 359.97438 * 4 3 2 6 6 C 1.48395 * 120.05941 * 180.02562 * 5 4 3 7 7 C 1.40035 * 120.82105 * 179.97438 * 6 5 4 8 8 C 1.38509 * 119.42545 * 179.97438 * 7 6 5 9 9 N 1.31476 * 121.14441 * 359.97438 * 8 7 6 10 10 C 1.33635 * 121.79373 * 0.02562 * 9 8 7 11 11 C 1.41428 * 119.77908 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00165 * 180.02562 * 11 10 9 13 13 C 1.40037 * 119.99817 * 359.72387 * 11 10 9 14 14 N 1.30729 * 119.99890 * 0.28105 * 13 11 10 15 15 Si 1.86799 * 119.99765 * 180.27481 * 13 11 10 16 16 H 1.48506 * 109.47265 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.47050 * 120.00315 * 15 13 11 18 18 H 1.48503 * 109.47197 * 240.00446 * 15 13 11 19 19 C 1.39301 * 120.82378 * 0.25169 * 6 5 4 20 20 C 1.39121 * 119.87508 * 0.26949 * 5 4 3 21 21 C 1.39152 * 119.75566 * 359.47512 * 20 5 4 22 22 C 1.48404 * 120.06715 * 180.24944 * 21 20 5 23 23 C 1.39339 * 120.11473 * 55.78122 * 22 21 20 24 24 C 1.38022 * 119.87263 * 179.74652 * 23 22 21 25 25 C 1.38326 * 120.12261 * 0.53143 * 24 23 22 26 26 C 1.38325 * 120.24048 * 359.72284 * 25 24 23 27 27 C 1.38017 * 120.12110 * 0.02562 * 26 25 24 28 28 H 1.08995 * 109.46934 * 95.36799 * 1 2 3 29 29 H 1.08999 * 109.46638 * 215.36508 * 1 2 3 30 30 H 1.08992 * 109.46957 * 335.36579 * 1 2 3 31 31 H 1.07997 * 119.87447 * 359.97438 * 3 2 1 32 32 H 1.07997 * 119.93967 * 179.97438 * 4 3 2 33 33 H 1.08009 * 120.28688 * 359.97438 * 7 6 5 34 34 H 1.08000 * 119.42427 * 179.97438 * 8 7 6 35 35 H 0.96998 * 120.00161 * 179.97438 * 14 13 11 36 36 H 1.07999 * 120.58153 * 0.02562 * 19 6 5 37 37 H 1.08004 * 120.12033 * 179.73208 * 20 5 4 38 38 H 1.07994 * 120.06267 * 0.02562 * 23 22 21 39 39 H 1.07996 * 119.94211 * 180.23569 * 24 23 22 40 40 H 1.07994 * 119.87748 * 179.74343 * 25 24 23 41 41 H 1.08002 * 119.93923 * 179.97438 * 26 25 24 42 42 H 1.08005 * 120.06109 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1964 1.1969 0.0000 4 6 3.5772 1.2044 0.0005 5 6 4.2834 0.0021 0.0016 6 6 5.7673 0.0118 0.0028 7 6 6.4926 -1.1861 0.0044 8 6 7.8770 -1.1434 0.0049 9 7 8.5220 0.0023 0.0034 10 6 7.8776 1.1730 0.0018 11 6 8.6143 2.3802 0.0007 12 1 8.0972 3.3284 -0.0002 13 6 10.0142 2.3462 0.0072 14 7 10.6401 1.1985 0.0086 15 14 10.9872 3.9408 0.0135 16 1 10.0499 5.0927 0.0111 17 1 11.8370 3.9972 1.2300 18 1 11.8482 4.0002 -1.1950 19 6 6.4733 1.2126 0.0080 20 6 3.5943 -1.2064 -0.0035 21 6 2.2027 -1.2079 0.0014 22 6 1.4606 -2.4931 0.0015 23 6 1.7015 -3.4394 0.9956 24 6 1.0047 -4.6308 0.9939 25 6 0.0767 -4.8908 0.0017 26 6 -0.1625 -3.9571 -0.9905 27 6 0.5248 -2.7603 -0.9956 28 1 -0.3633 -0.0961 -1.0231 29 1 -0.3632 -0.8381 0.5948 30 1 -0.3633 0.9341 0.4283 31 1 1.6534 2.1304 -0.0004 32 1 4.1111 2.1432 0.0001 33 1 5.9769 -2.1352 0.0053 34 1 8.4363 -2.0673 0.0066 35 1 11.6098 1.1749 0.0127 36 1 5.9503 2.1575 0.0118 37 1 4.1373 -2.1400 -0.0071 38 1 2.4288 -3.2390 1.7684 39 1 1.1878 -5.3634 1.7660 40 1 -0.4633 -5.8261 0.0019 41 1 -0.8879 -4.1654 -1.7631 42 1 0.3376 -2.0322 -1.7710 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244785832.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:57 Heat of formation + Delta-G solvation = 70.717392 kcal Electronic energy + Delta-G solvation = -23894.811048 eV Core-core repulsion = 20575.578262 eV Total energy + Delta-G solvation = -3319.232786 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.96950 -38.64427 -37.69380 -34.08821 -33.21990 -32.28639 -31.03710 -30.16360 -29.99219 -28.96825 -26.32274 -25.73883 -23.44839 -22.62473 -22.08443 -21.77824 -20.58405 -19.86317 -17.67577 -16.74080 -16.07912 -15.59645 -15.44462 -15.17788 -14.79710 -14.43539 -14.10677 -13.86838 -13.71589 -13.61525 -13.34419 -13.23855 -12.72128 -12.59095 -12.47853 -12.19599 -12.11131 -11.79221 -11.63605 -11.33028 -11.24997 -11.13029 -10.96143 -10.80118 -10.55379 -10.30388 -9.80831 -9.54760 -9.19974 -9.02774 -8.96609 -8.27377 -7.69155 -7.60327 -7.41708 -6.43029 -4.55823 0.98279 1.31246 1.40931 1.76995 2.72564 3.01103 3.07680 3.11807 3.16970 3.70293 3.92464 4.18455 4.61442 4.75970 4.84326 4.86394 5.01150 5.02846 5.05632 5.34838 5.37391 5.39562 5.48376 5.59883 5.66738 5.76638 5.87062 5.89400 5.90873 5.95036 6.03028 6.14275 6.23338 6.39437 6.41023 6.43157 6.52560 6.63017 6.66969 6.70927 6.82121 6.90477 6.97376 7.13164 7.21988 7.30798 7.50638 7.69441 7.97480 8.19649 8.62247 8.88039 10.08198 10.29111 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.024379 B = 0.002755 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.247556 B =10161.572831 C =11103.099943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.087 4.087 3 C -0.120 4.120 4 C -0.106 4.106 5 C -0.021 4.021 6 C -0.002 4.002 7 C -0.304 4.304 8 C 0.125 3.875 9 N -0.482 5.482 10 C 0.254 3.746 11 C -0.431 4.431 12 H 0.084 0.916 13 C 0.068 3.932 14 N -0.715 5.715 15 Si 0.907 3.093 16 H -0.260 1.260 17 H -0.273 1.273 18 H -0.273 1.273 19 C -0.252 4.252 20 C -0.093 4.093 21 C -0.060 4.060 22 C -0.031 4.031 23 C -0.107 4.107 24 C -0.120 4.120 25 C -0.125 4.125 26 C -0.122 4.122 27 C -0.107 4.107 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.120 0.880 32 H 0.128 0.872 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.272 0.728 36 H 0.103 0.897 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.907 -6.152 0.010 18.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.087 4.087 3 C -0.138 4.138 4 C -0.124 4.124 5 C -0.021 4.021 6 C -0.008 4.008 7 C -0.327 4.327 8 C -0.041 4.041 9 N -0.195 5.195 10 C 0.129 3.871 11 C -0.463 4.463 12 H 0.102 0.898 13 C -0.157 4.157 14 N -0.336 5.336 15 Si 0.731 3.269 16 H -0.184 1.184 17 H -0.198 1.198 18 H -0.198 1.198 19 C -0.275 4.275 20 C -0.112 4.112 21 C -0.060 4.060 22 C -0.031 4.031 23 C -0.125 4.125 24 C -0.138 4.138 25 C -0.143 4.143 26 C -0.140 4.140 27 C -0.125 4.125 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.145 0.855 33 H 0.114 0.886 34 H 0.137 0.863 35 H 0.084 0.916 36 H 0.121 0.879 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.762 -6.201 0.013 17.872 hybrid contribution -0.388 0.581 -0.010 0.699 sum -17.150 -5.620 0.002 18.047 Atomic orbital electron populations 1.20794 0.91579 1.02355 1.01898 1.19813 0.95507 0.92191 1.01238 1.20841 0.94030 0.97012 1.01900 1.21387 0.93670 0.98281 0.99048 1.18987 0.93181 0.92477 0.97411 1.18574 0.89480 0.94223 0.98546 1.21338 0.95506 0.95909 1.19969 1.22455 0.90631 0.96818 0.94153 1.68713 1.37569 0.96515 1.16720 1.18564 0.88068 0.91992 0.88444 1.19656 0.91019 0.92598 1.42988 0.89788 1.26073 0.98585 0.97428 0.93598 1.70137 1.09194 1.25704 1.28592 0.86284 0.79867 0.82168 0.78593 1.18382 1.19804 1.19795 1.21857 0.95482 0.95675 1.14487 1.21290 0.92263 0.98164 0.99443 1.18513 0.92681 0.91329 1.03449 1.18801 0.95940 0.93255 0.95148 1.21305 0.99528 0.93356 0.98347 1.21091 0.96754 0.97043 0.98882 1.21161 0.98670 0.99306 0.95205 1.21065 1.00025 0.94049 0.98862 1.21239 0.95956 0.97180 0.98085 0.91555 0.91641 0.91936 0.86171 0.85458 0.88562 0.86301 0.91635 0.87945 0.85619 0.85789 0.86040 0.86309 0.86136 0.85978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 8.55 36.01 0.31 -0.85 16 2 C -0.09 -1.20 5.88 -104.23 -0.61 -1.81 16 3 C -0.12 -1.71 9.65 -39.68 -0.38 -2.09 16 4 C -0.11 -1.79 9.44 -39.20 -0.37 -2.16 16 5 C -0.02 -0.39 5.87 -104.94 -0.62 -1.01 16 6 C 0.00 -0.05 5.91 -104.65 -0.62 -0.67 16 7 C -0.30 -6.82 9.51 -38.81 -0.37 -7.19 16 8 C 0.12 3.03 11.17 -17.60 -0.20 2.83 16 9 N -0.48 -13.34 7.85 -11.20 -0.09 -13.43 16 10 C 0.25 6.93 6.55 -85.02 -0.56 6.37 16 11 C -0.43 -11.49 9.14 -37.69 -0.34 -11.83 16 12 H 0.08 2.08 7.85 -52.48 -0.41 1.67 16 13 C 0.07 1.74 5.50 -17.35 -0.10 1.64 16 14 N -0.71 -19.06 11.46 55.55 0.64 -18.42 16 15 Si 0.91 18.50 29.56 -169.99 -5.02 13.47 16 16 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 17 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 18 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 19 C -0.25 -6.14 9.22 -38.34 -0.35 -6.49 16 20 C -0.09 -1.59 9.01 -38.91 -0.35 -1.94 16 21 C -0.06 -0.88 5.40 -104.94 -0.57 -1.45 16 22 C -0.03 -0.41 4.51 -104.89 -0.47 -0.88 16 23 C -0.11 -1.29 9.61 -39.25 -0.38 -1.67 16 24 C -0.12 -1.22 10.03 -39.63 -0.40 -1.62 16 25 C -0.13 -1.18 10.04 -39.52 -0.40 -1.58 16 26 C -0.12 -1.18 10.03 -39.63 -0.40 -1.58 16 27 C -0.11 -1.20 8.26 -39.26 -0.32 -1.52 16 28 H 0.07 0.62 7.53 -51.93 -0.39 0.23 16 29 H 0.06 0.69 6.99 -51.93 -0.36 0.33 16 30 H 0.06 0.57 8.05 -51.93 -0.42 0.16 16 31 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.13 2.10 6.28 -52.49 -0.33 1.77 16 33 H 0.10 1.90 6.32 -52.48 -0.33 1.57 16 34 H 0.12 2.56 8.06 -52.49 -0.42 2.14 16 35 H 0.27 6.55 8.29 -40.82 -0.34 6.21 16 36 H 0.10 2.28 6.32 -52.49 -0.33 1.95 16 37 H 0.13 2.09 6.28 -52.48 -0.33 1.76 16 38 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.12 1.27 7.28 -52.48 -0.38 0.88 16 LS Contribution 353.01 15.07 5.32 5.32 Total: -1.00 -29.76 353.01 -11.61 -41.37 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -4.96 Total: 7.17 kcal Atomic # 6 Polarization: -27.99 SS G_CDS: -7.49 Total: -35.49 kcal Atomic # 7 Polarization: -32.40 SS G_CDS: 0.55 Total: -31.85 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.02 Total: 13.47 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.76 -11.61 -41.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244785832.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.090 kcal (2) G-P(sol) polarization free energy of solvation -29.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds