Wall clock time and date at job start Tue Mar 31 2020 11:10:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50707 * 1
3 3 C 1.38122 * 119.94040 * 2 1
4 4 C 1.38074 * 120.25185 * 179.97438 * 3 2 1
5 5 C 1.39436 * 120.11952 * 359.97438 * 4 3 2
6 6 C 1.48395 * 120.05941 * 180.02562 * 5 4 3
7 7 C 1.40035 * 120.82105 * 179.97438 * 6 5 4
8 8 C 1.38509 * 119.42545 * 179.97438 * 7 6 5
9 9 N 1.31476 * 121.14441 * 359.97438 * 8 7 6
10 10 C 1.33635 * 121.79373 * 0.02562 * 9 8 7
11 11 C 1.41428 * 119.77908 * 179.97438 * 10 9 8
12 12 H 1.08003 * 120.00165 * 180.02562 * 11 10 9
13 13 C 1.40037 * 119.99817 * 359.72387 * 11 10 9
14 14 N 1.30729 * 119.99890 * 0.28105 * 13 11 10
15 15 Si 1.86799 * 119.99765 * 180.27481 * 13 11 10
16 16 H 1.48506 * 109.47265 * 0.02562 * 15 13 11
17 17 H 1.48494 * 109.47050 * 120.00315 * 15 13 11
18 18 H 1.48503 * 109.47197 * 240.00446 * 15 13 11
19 19 C 1.39301 * 120.82378 * 0.25169 * 6 5 4
20 20 C 1.39121 * 119.87508 * 0.26949 * 5 4 3
21 21 C 1.39152 * 119.75566 * 359.47512 * 20 5 4
22 22 C 1.48404 * 120.06715 * 180.24944 * 21 20 5
23 23 C 1.39339 * 120.11473 * 55.78122 * 22 21 20
24 24 C 1.38022 * 119.87263 * 179.74652 * 23 22 21
25 25 C 1.38326 * 120.12261 * 0.53143 * 24 23 22
26 26 C 1.38325 * 120.24048 * 359.72284 * 25 24 23
27 27 C 1.38017 * 120.12110 * 0.02562 * 26 25 24
28 28 H 1.08995 * 109.46934 * 95.36799 * 1 2 3
29 29 H 1.08999 * 109.46638 * 215.36508 * 1 2 3
30 30 H 1.08992 * 109.46957 * 335.36579 * 1 2 3
31 31 H 1.07997 * 119.87447 * 359.97438 * 3 2 1
32 32 H 1.07997 * 119.93967 * 179.97438 * 4 3 2
33 33 H 1.08009 * 120.28688 * 359.97438 * 7 6 5
34 34 H 1.08000 * 119.42427 * 179.97438 * 8 7 6
35 35 H 0.96998 * 120.00161 * 179.97438 * 14 13 11
36 36 H 1.07999 * 120.58153 * 0.02562 * 19 6 5
37 37 H 1.08004 * 120.12033 * 179.73208 * 20 5 4
38 38 H 1.07994 * 120.06267 * 0.02562 * 23 22 21
39 39 H 1.07996 * 119.94211 * 180.23569 * 24 23 22
40 40 H 1.07994 * 119.87748 * 179.74343 * 25 24 23
41 41 H 1.08002 * 119.93923 * 179.97438 * 26 25 24
42 42 H 1.08005 * 120.06109 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1964 1.1969 0.0000
4 6 3.5772 1.2044 0.0005
5 6 4.2834 0.0021 0.0016
6 6 5.7673 0.0118 0.0028
7 6 6.4926 -1.1861 0.0044
8 6 7.8770 -1.1434 0.0049
9 7 8.5220 0.0023 0.0034
10 6 7.8776 1.1730 0.0018
11 6 8.6143 2.3802 0.0007
12 1 8.0972 3.3284 -0.0002
13 6 10.0142 2.3462 0.0072
14 7 10.6401 1.1985 0.0086
15 14 10.9872 3.9408 0.0135
16 1 10.0499 5.0927 0.0111
17 1 11.8370 3.9972 1.2300
18 1 11.8482 4.0002 -1.1950
19 6 6.4733 1.2126 0.0080
20 6 3.5943 -1.2064 -0.0035
21 6 2.2027 -1.2079 0.0014
22 6 1.4606 -2.4931 0.0015
23 6 1.7015 -3.4394 0.9956
24 6 1.0047 -4.6308 0.9939
25 6 0.0767 -4.8908 0.0017
26 6 -0.1625 -3.9571 -0.9905
27 6 0.5248 -2.7603 -0.9956
28 1 -0.3633 -0.0961 -1.0231
29 1 -0.3632 -0.8381 0.5948
30 1 -0.3633 0.9341 0.4283
31 1 1.6534 2.1304 -0.0004
32 1 4.1111 2.1432 0.0001
33 1 5.9769 -2.1352 0.0053
34 1 8.4363 -2.0673 0.0066
35 1 11.6098 1.1749 0.0127
36 1 5.9503 2.1575 0.0118
37 1 4.1373 -2.1400 -0.0071
38 1 2.4288 -3.2390 1.7684
39 1 1.1878 -5.3634 1.7660
40 1 -0.4633 -5.8261 0.0019
41 1 -0.8879 -4.1654 -1.7631
42 1 0.3376 -2.0322 -1.7710
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001244785832.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:10:56
Heat of formation + Delta-G solvation = 58.513260 kcal
Electronic energy + Delta-G solvation = -23895.340259 eV
Core-core repulsion = 20575.578262 eV
Total energy + Delta-G solvation = -3319.761996 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 315.132 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-41.10144 -40.06823 -39.04409 -35.75193 -34.75776 -33.37220 -32.03911 -31.93824
-31.38764 -30.04664 -27.77866 -27.40473 -24.64317 -23.78263 -23.33121 -23.15767
-22.04326 -21.20460 -19.28098 -17.94612 -17.50009 -17.09124 -16.58450 -16.51752
-15.86823 -15.74739 -15.62304 -15.40369 -14.98430 -14.66832 -14.51104 -14.29304
-14.15276 -14.08158 -13.66129 -13.53924 -13.18959 -13.08763 -12.96699 -12.80849
-12.73912 -12.51709 -12.30661 -11.98538 -11.87821 -11.80275 -11.45780 -11.28555
-10.65010 -10.14697 -9.82532 -9.63267 -9.54267 -9.36036 -8.90646 -8.31796
-6.55107 -0.12215 0.14192 0.51762 0.69602 0.86292 1.37059 1.39488
1.54417 1.55429 2.21580 2.70976 2.88036 3.00370 3.59912 3.79422
3.90887 3.93513 4.03344 4.09903 4.14753 4.20335 4.28171 4.31206
4.46623 4.57394 4.60834 4.68010 4.72474 4.78805 4.82244 4.87880
4.94993 5.03866 5.12245 5.16202 5.20269 5.23332 5.34140 5.47454
5.50874 5.56199 5.57236 5.62688 5.63165 5.74014 5.92081 6.04289
6.11359 6.14052 6.25837 6.70238 6.92306 8.15334 8.43586
Molecular weight = 315.13amu
Principal moments of inertia in cm(-1)
A = 0.024379 B = 0.002755 C = 0.002521
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1148.247556 B =10161.572831 C =11103.099943
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.107 4.107
2 C -0.078 4.078
3 C -0.116 4.116
4 C -0.116 4.116
5 C -0.056 4.056
6 C 0.002 3.998
7 C -0.302 4.302
8 C 0.106 3.894
9 N -0.521 5.521
10 C 0.223 3.777
11 C -0.468 4.468
12 H 0.090 0.910
13 C 0.022 3.978
14 N -0.757 5.757
15 Si 0.989 3.011
16 H -0.253 1.253
17 H -0.266 1.266
18 H -0.265 1.265
19 C -0.274 4.274
20 C -0.100 4.100
21 C -0.059 4.059
22 C -0.054 4.054
23 C -0.124 4.124
24 C -0.124 4.124
25 C -0.122 4.122
26 C -0.121 4.121
27 C -0.112 4.112
28 H 0.084 0.916
29 H 0.067 0.933
30 H 0.080 0.920
31 H 0.152 0.848
32 H 0.123 0.877
33 H 0.122 0.878
34 H 0.139 0.861
35 H 0.279 0.721
36 H 0.113 0.887
37 H 0.121 0.879
38 H 0.115 0.885
39 H 0.140 0.860
40 H 0.147 0.853
41 H 0.148 0.852
42 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.154 -6.508 -0.328 22.135
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C -0.078 4.078
3 C -0.134 4.134
4 C -0.134 4.134
5 C -0.056 4.056
6 C -0.004 4.004
7 C -0.325 4.325
8 C -0.058 4.058
9 N -0.235 5.235
10 C 0.098 3.902
11 C -0.499 4.499
12 H 0.108 0.892
13 C -0.199 4.199
14 N -0.379 5.379
15 Si 0.809 3.191
16 H -0.176 1.176
17 H -0.190 1.190
18 H -0.190 1.190
19 C -0.296 4.296
20 C -0.118 4.118
21 C -0.059 4.059
22 C -0.054 4.054
23 C -0.143 4.143
24 C -0.142 4.142
25 C -0.140 4.140
26 C -0.139 4.139
27 C -0.130 4.130
28 H 0.103 0.897
29 H 0.085 0.915
30 H 0.099 0.901
31 H 0.170 0.830
32 H 0.141 0.859
33 H 0.140 0.860
34 H 0.157 0.843
35 H 0.090 0.910
36 H 0.131 0.869
37 H 0.139 0.861
38 H 0.133 0.867
39 H 0.158 0.842
40 H 0.165 0.835
41 H 0.166 0.834
42 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges -20.033 -6.577 -0.324 21.088
hybrid contribution 0.334 0.490 0.095 0.600
sum -19.699 -6.088 -0.229 20.620
Atomic orbital electron populations
1.20859 0.88740 1.03483 1.03232 1.20294 0.97532 0.91453 0.98515
1.21170 0.92883 0.98753 1.00603 1.21468 0.95059 0.97362 0.99490
1.18891 0.91260 0.94279 1.01207 1.18964 0.91819 0.93466 0.96121
1.21637 0.95025 0.97251 1.18589 1.22886 0.91853 0.96864 0.94161
1.68657 1.38915 0.97409 1.18481 1.19019 0.89569 0.92439 0.89172
1.20017 0.92330 0.92775 1.44770 0.89221 1.27041 0.99126 1.01324
0.92449 1.70238 1.09832 1.28242 1.29621 0.85062 0.78007 0.77191
0.78848 1.17596 1.19040 1.19013 1.21977 0.94783 0.97051 1.15790
1.21293 0.93510 0.97130 0.99833 1.18757 0.91859 0.93061 1.02217
1.18778 0.97183 0.92774 0.96617 1.21374 1.00150 0.94292 0.98438
1.21359 0.96503 0.96618 0.99707 1.21554 0.97902 1.00231 0.94273
1.21413 0.99869 0.93219 0.99378 1.21374 0.95681 0.98192 0.97716
0.89744 0.91450 0.90086 0.82989 0.85900 0.85996 0.84329 0.91015
0.86926 0.86114 0.86672 0.84183 0.83496 0.83430 0.85237
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.86 8.55 71.24 0.61 -1.25 16
2 C -0.08 -1.96 5.88 -19.61 -0.12 -2.07 16
3 C -0.12 -3.10 9.65 22.20 0.21 -2.88 16
4 C -0.12 -3.92 9.44 22.52 0.21 -3.71 16
5 C -0.06 -2.19 5.87 -20.07 -0.12 -2.30 16
6 C 0.00 0.12 5.91 -19.88 -0.12 0.00 16
7 C -0.30 -14.02 9.51 22.77 0.22 -13.80 16
8 C 0.11 5.38 11.17 84.81 0.95 6.33 16
9 N -0.52 -30.37 7.85 -189.36 -1.49 -31.85 16
10 C 0.22 12.85 6.55 40.20 0.26 13.11 16
11 C -0.47 -26.10 9.14 23.49 0.21 -25.89 16
12 H 0.09 4.66 7.85 -2.91 -0.02 4.64 16
13 C 0.02 1.15 5.50 85.29 0.47 1.62 16
14 N -0.76 -42.05 11.46 21.84 0.25 -41.80 16
15 Si 0.99 38.83 29.56 68.60 2.03 40.86 16
16 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16
17 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16
18 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16
19 C -0.27 -14.03 9.22 23.07 0.21 -13.82 16
20 C -0.10 -3.40 9.01 22.70 0.20 -3.19 16
21 C -0.06 -1.68 5.40 -20.07 -0.11 -1.79 16
22 C -0.05 -1.30 4.51 -20.04 -0.09 -1.39 16
23 C -0.12 -2.86 9.61 22.48 0.22 -2.64 16
24 C -0.12 -2.23 10.03 22.24 0.22 -2.01 16
25 C -0.12 -1.85 10.04 22.31 0.22 -1.63 16
26 C -0.12 -1.90 10.03 22.24 0.22 -1.68 16
27 C -0.11 -2.21 8.26 22.48 0.19 -2.02 16
28 H 0.08 1.22 7.53 -2.39 -0.02 1.20 16
29 H 0.07 1.19 6.99 -2.39 -0.02 1.18 16
30 H 0.08 1.14 8.05 -2.39 -0.02 1.12 16
31 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16
32 H 0.12 4.16 6.28 -2.91 -0.02 4.15 16
33 H 0.12 4.89 6.32 -2.91 -0.02 4.87 16
34 H 0.14 6.20 8.06 -2.91 -0.02 6.18 16
35 H 0.28 13.92 8.29 -92.71 -0.77 13.15 16
36 H 0.11 5.32 6.32 -2.91 -0.02 5.30 16
37 H 0.12 4.10 6.28 -2.91 -0.02 4.08 16
38 H 0.12 2.73 8.06 -2.91 -0.02 2.71 16
39 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16
40 H 0.15 1.40 8.06 -2.91 -0.02 1.37 16
41 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16
42 H 0.13 2.29 7.28 -2.91 -0.02 2.27 16
Total: -1.00 -68.53 353.01 5.92 -62.61
By element:
Atomic # 1 Polarization: 30.16 SS G_CDS: 1.04 Total: 31.20 kcal
Atomic # 6 Polarization: -65.10 SS G_CDS: 4.09 Total: -61.01 kcal
Atomic # 7 Polarization: -72.42 SS G_CDS: -1.24 Total: -73.65 kcal
Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal
Total: -68.53 5.92 -62.61 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001244785832.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 121.125 kcal
(2) G-P(sol) polarization free energy of solvation -68.531 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.594 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.919 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.612 kcal
(6) G-S(sol) free energy of system = (1) + (5) 58.513 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds