Wall clock time and date at job start Tue Mar 31 2020 11:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38122 * 119.94040 * 2 1 4 4 C 1.38074 * 120.25185 * 179.97438 * 3 2 1 5 5 C 1.39436 * 120.11952 * 359.97438 * 4 3 2 6 6 C 1.48395 * 120.05941 * 180.02562 * 5 4 3 7 7 C 1.40035 * 120.82105 * 179.97438 * 6 5 4 8 8 C 1.38509 * 119.42545 * 179.97438 * 7 6 5 9 9 N 1.31476 * 121.14441 * 359.97438 * 8 7 6 10 10 C 1.33635 * 121.79373 * 0.02562 * 9 8 7 11 11 C 1.41428 * 119.77908 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00165 * 180.02562 * 11 10 9 13 13 C 1.40037 * 119.99817 * 359.72387 * 11 10 9 14 14 N 1.30729 * 119.99890 * 0.28105 * 13 11 10 15 15 Si 1.86799 * 119.99765 * 180.27481 * 13 11 10 16 16 H 1.48506 * 109.47265 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.47050 * 120.00315 * 15 13 11 18 18 H 1.48503 * 109.47197 * 240.00446 * 15 13 11 19 19 C 1.39301 * 120.82378 * 0.25169 * 6 5 4 20 20 C 1.39121 * 119.87508 * 0.26949 * 5 4 3 21 21 C 1.39152 * 119.75566 * 359.47512 * 20 5 4 22 22 C 1.48404 * 120.06715 * 180.24944 * 21 20 5 23 23 C 1.39339 * 120.11473 * 55.78122 * 22 21 20 24 24 C 1.38022 * 119.87263 * 179.74652 * 23 22 21 25 25 C 1.38326 * 120.12261 * 0.53143 * 24 23 22 26 26 C 1.38325 * 120.24048 * 359.72284 * 25 24 23 27 27 C 1.38017 * 120.12110 * 0.02562 * 26 25 24 28 28 H 1.08995 * 109.46934 * 95.36799 * 1 2 3 29 29 H 1.08999 * 109.46638 * 215.36508 * 1 2 3 30 30 H 1.08992 * 109.46957 * 335.36579 * 1 2 3 31 31 H 1.07997 * 119.87447 * 359.97438 * 3 2 1 32 32 H 1.07997 * 119.93967 * 179.97438 * 4 3 2 33 33 H 1.08009 * 120.28688 * 359.97438 * 7 6 5 34 34 H 1.08000 * 119.42427 * 179.97438 * 8 7 6 35 35 H 0.96998 * 120.00161 * 179.97438 * 14 13 11 36 36 H 1.07999 * 120.58153 * 0.02562 * 19 6 5 37 37 H 1.08004 * 120.12033 * 179.73208 * 20 5 4 38 38 H 1.07994 * 120.06267 * 0.02562 * 23 22 21 39 39 H 1.07996 * 119.94211 * 180.23569 * 24 23 22 40 40 H 1.07994 * 119.87748 * 179.74343 * 25 24 23 41 41 H 1.08002 * 119.93923 * 179.97438 * 26 25 24 42 42 H 1.08005 * 120.06109 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1964 1.1969 0.0000 4 6 3.5772 1.2044 0.0005 5 6 4.2834 0.0021 0.0016 6 6 5.7673 0.0118 0.0028 7 6 6.4926 -1.1861 0.0044 8 6 7.8770 -1.1434 0.0049 9 7 8.5220 0.0023 0.0034 10 6 7.8776 1.1730 0.0018 11 6 8.6143 2.3802 0.0007 12 1 8.0972 3.3284 -0.0002 13 6 10.0142 2.3462 0.0072 14 7 10.6401 1.1985 0.0086 15 14 10.9872 3.9408 0.0135 16 1 10.0499 5.0927 0.0111 17 1 11.8370 3.9972 1.2300 18 1 11.8482 4.0002 -1.1950 19 6 6.4733 1.2126 0.0080 20 6 3.5943 -1.2064 -0.0035 21 6 2.2027 -1.2079 0.0014 22 6 1.4606 -2.4931 0.0015 23 6 1.7015 -3.4394 0.9956 24 6 1.0047 -4.6308 0.9939 25 6 0.0767 -4.8908 0.0017 26 6 -0.1625 -3.9571 -0.9905 27 6 0.5248 -2.7603 -0.9956 28 1 -0.3633 -0.0961 -1.0231 29 1 -0.3632 -0.8381 0.5948 30 1 -0.3633 0.9341 0.4283 31 1 1.6534 2.1304 -0.0004 32 1 4.1111 2.1432 0.0001 33 1 5.9769 -2.1352 0.0053 34 1 8.4363 -2.0673 0.0066 35 1 11.6098 1.1749 0.0127 36 1 5.9503 2.1575 0.0118 37 1 4.1373 -2.1400 -0.0071 38 1 2.4288 -3.2390 1.7684 39 1 1.1878 -5.3634 1.7660 40 1 -0.4633 -5.8261 0.0019 41 1 -0.8879 -4.1654 -1.7631 42 1 0.3376 -2.0322 -1.7710 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244785832.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:56 Heat of formation + Delta-G solvation = 58.513260 kcal Electronic energy + Delta-G solvation = -23895.340259 eV Core-core repulsion = 20575.578262 eV Total energy + Delta-G solvation = -3319.761996 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.10144 -40.06823 -39.04409 -35.75193 -34.75776 -33.37220 -32.03911 -31.93824 -31.38764 -30.04664 -27.77866 -27.40473 -24.64317 -23.78263 -23.33121 -23.15767 -22.04326 -21.20460 -19.28098 -17.94612 -17.50009 -17.09124 -16.58450 -16.51752 -15.86823 -15.74739 -15.62304 -15.40369 -14.98430 -14.66832 -14.51104 -14.29304 -14.15276 -14.08158 -13.66129 -13.53924 -13.18959 -13.08763 -12.96699 -12.80849 -12.73912 -12.51709 -12.30661 -11.98538 -11.87821 -11.80275 -11.45780 -11.28555 -10.65010 -10.14697 -9.82532 -9.63267 -9.54267 -9.36036 -8.90646 -8.31796 -6.55107 -0.12215 0.14192 0.51762 0.69602 0.86292 1.37059 1.39488 1.54417 1.55429 2.21580 2.70976 2.88036 3.00370 3.59912 3.79422 3.90887 3.93513 4.03344 4.09903 4.14753 4.20335 4.28171 4.31206 4.46623 4.57394 4.60834 4.68010 4.72474 4.78805 4.82244 4.87880 4.94993 5.03866 5.12245 5.16202 5.20269 5.23332 5.34140 5.47454 5.50874 5.56199 5.57236 5.62688 5.63165 5.74014 5.92081 6.04289 6.11359 6.14052 6.25837 6.70238 6.92306 8.15334 8.43586 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.024379 B = 0.002755 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.247556 B =10161.572831 C =11103.099943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.078 4.078 3 C -0.116 4.116 4 C -0.116 4.116 5 C -0.056 4.056 6 C 0.002 3.998 7 C -0.302 4.302 8 C 0.106 3.894 9 N -0.521 5.521 10 C 0.223 3.777 11 C -0.468 4.468 12 H 0.090 0.910 13 C 0.022 3.978 14 N -0.757 5.757 15 Si 0.989 3.011 16 H -0.253 1.253 17 H -0.266 1.266 18 H -0.265 1.265 19 C -0.274 4.274 20 C -0.100 4.100 21 C -0.059 4.059 22 C -0.054 4.054 23 C -0.124 4.124 24 C -0.124 4.124 25 C -0.122 4.122 26 C -0.121 4.121 27 C -0.112 4.112 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.152 0.848 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.139 0.861 35 H 0.279 0.721 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.115 0.885 39 H 0.140 0.860 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.154 -6.508 -0.328 22.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.078 4.078 3 C -0.134 4.134 4 C -0.134 4.134 5 C -0.056 4.056 6 C -0.004 4.004 7 C -0.325 4.325 8 C -0.058 4.058 9 N -0.235 5.235 10 C 0.098 3.902 11 C -0.499 4.499 12 H 0.108 0.892 13 C -0.199 4.199 14 N -0.379 5.379 15 Si 0.809 3.191 16 H -0.176 1.176 17 H -0.190 1.190 18 H -0.190 1.190 19 C -0.296 4.296 20 C -0.118 4.118 21 C -0.059 4.059 22 C -0.054 4.054 23 C -0.143 4.143 24 C -0.142 4.142 25 C -0.140 4.140 26 C -0.139 4.139 27 C -0.130 4.130 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.170 0.830 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.157 0.843 35 H 0.090 0.910 36 H 0.131 0.869 37 H 0.139 0.861 38 H 0.133 0.867 39 H 0.158 0.842 40 H 0.165 0.835 41 H 0.166 0.834 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -20.033 -6.577 -0.324 21.088 hybrid contribution 0.334 0.490 0.095 0.600 sum -19.699 -6.088 -0.229 20.620 Atomic orbital electron populations 1.20859 0.88740 1.03483 1.03232 1.20294 0.97532 0.91453 0.98515 1.21170 0.92883 0.98753 1.00603 1.21468 0.95059 0.97362 0.99490 1.18891 0.91260 0.94279 1.01207 1.18964 0.91819 0.93466 0.96121 1.21637 0.95025 0.97251 1.18589 1.22886 0.91853 0.96864 0.94161 1.68657 1.38915 0.97409 1.18481 1.19019 0.89569 0.92439 0.89172 1.20017 0.92330 0.92775 1.44770 0.89221 1.27041 0.99126 1.01324 0.92449 1.70238 1.09832 1.28242 1.29621 0.85062 0.78007 0.77191 0.78848 1.17596 1.19040 1.19013 1.21977 0.94783 0.97051 1.15790 1.21293 0.93510 0.97130 0.99833 1.18757 0.91859 0.93061 1.02217 1.18778 0.97183 0.92774 0.96617 1.21374 1.00150 0.94292 0.98438 1.21359 0.96503 0.96618 0.99707 1.21554 0.97902 1.00231 0.94273 1.21413 0.99869 0.93219 0.99378 1.21374 0.95681 0.98192 0.97716 0.89744 0.91450 0.90086 0.82989 0.85900 0.85996 0.84329 0.91015 0.86926 0.86114 0.86672 0.84183 0.83496 0.83430 0.85237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 8.55 71.24 0.61 -1.25 16 2 C -0.08 -1.96 5.88 -19.61 -0.12 -2.07 16 3 C -0.12 -3.10 9.65 22.20 0.21 -2.88 16 4 C -0.12 -3.92 9.44 22.52 0.21 -3.71 16 5 C -0.06 -2.19 5.87 -20.07 -0.12 -2.30 16 6 C 0.00 0.12 5.91 -19.88 -0.12 0.00 16 7 C -0.30 -14.02 9.51 22.77 0.22 -13.80 16 8 C 0.11 5.38 11.17 84.81 0.95 6.33 16 9 N -0.52 -30.37 7.85 -189.36 -1.49 -31.85 16 10 C 0.22 12.85 6.55 40.20 0.26 13.11 16 11 C -0.47 -26.10 9.14 23.49 0.21 -25.89 16 12 H 0.09 4.66 7.85 -2.91 -0.02 4.64 16 13 C 0.02 1.15 5.50 85.29 0.47 1.62 16 14 N -0.76 -42.05 11.46 21.84 0.25 -41.80 16 15 Si 0.99 38.83 29.56 68.60 2.03 40.86 16 16 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 17 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 18 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 19 C -0.27 -14.03 9.22 23.07 0.21 -13.82 16 20 C -0.10 -3.40 9.01 22.70 0.20 -3.19 16 21 C -0.06 -1.68 5.40 -20.07 -0.11 -1.79 16 22 C -0.05 -1.30 4.51 -20.04 -0.09 -1.39 16 23 C -0.12 -2.86 9.61 22.48 0.22 -2.64 16 24 C -0.12 -2.23 10.03 22.24 0.22 -2.01 16 25 C -0.12 -1.85 10.04 22.31 0.22 -1.63 16 26 C -0.12 -1.90 10.03 22.24 0.22 -1.68 16 27 C -0.11 -2.21 8.26 22.48 0.19 -2.02 16 28 H 0.08 1.22 7.53 -2.39 -0.02 1.20 16 29 H 0.07 1.19 6.99 -2.39 -0.02 1.18 16 30 H 0.08 1.14 8.05 -2.39 -0.02 1.12 16 31 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 32 H 0.12 4.16 6.28 -2.91 -0.02 4.15 16 33 H 0.12 4.89 6.32 -2.91 -0.02 4.87 16 34 H 0.14 6.20 8.06 -2.91 -0.02 6.18 16 35 H 0.28 13.92 8.29 -92.71 -0.77 13.15 16 36 H 0.11 5.32 6.32 -2.91 -0.02 5.30 16 37 H 0.12 4.10 6.28 -2.91 -0.02 4.08 16 38 H 0.12 2.73 8.06 -2.91 -0.02 2.71 16 39 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.15 1.40 8.06 -2.91 -0.02 1.37 16 41 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 42 H 0.13 2.29 7.28 -2.91 -0.02 2.27 16 Total: -1.00 -68.53 353.01 5.92 -62.61 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: 1.04 Total: 31.20 kcal Atomic # 6 Polarization: -65.10 SS G_CDS: 4.09 Total: -61.01 kcal Atomic # 7 Polarization: -72.42 SS G_CDS: -1.24 Total: -73.65 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Total: -68.53 5.92 -62.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244785832.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.125 kcal (2) G-P(sol) polarization free energy of solvation -68.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds