Wall clock time and date at job start Tue Mar 31 2020 11:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38201 * 119.91374 * 2 1 4 4 C 1.37976 * 120.27973 * 180.25345 * 3 2 1 5 5 C 1.39752 * 120.09359 * 359.74246 * 4 3 2 6 6 C 1.47867 * 120.09581 * 180.02562 * 5 4 3 7 7 C 1.39294 * 120.78046 * 129.97628 * 6 5 4 8 8 N 1.31685 * 120.66068 * 179.97438 * 7 6 5 9 9 C 1.32201 * 122.49981 * 0.02562 * 8 7 6 10 10 C 1.36488 * 121.51073 * 0.02562 * 9 8 7 11 11 C 1.41115 * 119.10340 * 359.72147 * 10 9 8 12 12 C 1.40936 * 121.10976 * 180.29479 * 11 10 9 13 13 H 1.07999 * 120.00173 * 150.48904 * 12 11 10 14 14 C 1.40179 * 119.99906 * 330.50041 * 12 11 10 15 15 N 1.30684 * 119.99831 * 162.07503 * 14 12 11 16 16 Si 1.86800 * 119.99883 * 342.06610 * 14 12 11 17 17 H 1.48499 * 109.47237 * 95.35508 * 16 14 12 18 18 H 1.48497 * 109.46950 * 215.35838 * 16 14 12 19 19 H 1.48506 * 109.47053 * 335.35433 * 16 14 12 20 20 C 1.39448 * 119.81569 * 0.02562 * 5 4 3 21 21 C 1.39065 * 119.72586 * 359.97438 * 20 5 4 22 22 C 1.48407 * 120.05076 * 179.97438 * 21 20 5 23 23 C 1.39339 * 120.11693 * 310.00519 * 22 21 20 24 24 C 1.38021 * 119.87355 * 180.02562 * 23 22 21 25 25 C 1.38323 * 120.12057 * 0.25599 * 24 23 22 26 26 C 1.38319 * 120.24117 * 359.48701 * 25 24 23 27 27 C 1.38017 * 120.12615 * 0.51148 * 26 25 24 28 28 H 1.08992 * 109.47415 * 270.26011 * 1 2 3 29 29 H 1.09005 * 109.46760 * 30.25726 * 1 2 3 30 30 H 1.08997 * 109.47320 * 150.24818 * 1 2 3 31 31 H 1.08000 * 119.85903 * 0.02562 * 3 2 1 32 32 H 1.08002 * 119.95502 * 179.77006 * 4 3 2 33 33 H 1.07992 * 119.66961 * 359.97438 * 7 6 5 34 34 H 1.08004 * 119.24624 * 179.97438 * 9 8 7 35 35 H 1.07998 * 120.45021 * 179.97438 * 10 9 8 36 36 H 0.97001 * 119.99762 * 179.97438 * 15 14 12 37 37 H 1.07998 * 120.14273 * 180.02562 * 20 5 4 38 38 H 1.07995 * 120.06085 * 0.04312 * 23 22 21 39 39 H 1.07999 * 119.94138 * 179.97438 * 24 23 22 40 40 H 1.08006 * 119.87828 * 179.74384 * 25 24 23 41 41 H 1.08007 * 119.93989 * 180.23171 * 26 25 24 42 42 H 1.07997 * 120.06799 * 179.76609 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1979 0.0000 4 6 3.5759 1.2067 -0.0053 5 6 4.2844 0.0021 -0.0052 6 6 5.7630 0.0115 -0.0103 7 6 6.4838 -0.7510 0.9059 8 7 7.8006 -0.7412 0.8989 9 6 8.5011 -0.0212 0.0395 10 6 7.8922 0.7612 -0.8986 11 6 6.4826 0.7957 -0.9535 12 6 5.8101 1.5840 -1.9088 13 1 4.8399 1.2802 -2.2733 14 6 6.4007 2.7623 -2.3862 15 7 5.9733 3.3043 -3.4959 16 14 7.7983 3.5580 -1.4359 17 1 9.0975 3.1085 -1.9973 18 1 7.6951 5.0351 -1.5480 19 1 7.7132 3.1628 -0.0069 20 6 3.5929 -1.2089 -0.0003 21 6 2.2023 -1.2089 0.0049 22 6 1.4592 -2.4936 0.0096 23 6 1.7762 -3.4880 -0.9135 24 6 1.0815 -4.6806 -0.9050 25 6 0.0687 -4.8874 0.0140 26 6 -0.2466 -3.9056 0.9360 27 6 0.4416 -2.7093 0.9366 28 1 -0.3634 0.0047 1.0276 29 1 -0.3633 0.8877 -0.5179 30 1 -0.3634 -0.8922 -0.5100 31 1 1.6525 2.1311 0.0004 32 1 4.1092 2.1459 -0.0090 33 1 5.9575 -1.3561 1.6291 34 1 9.5799 -0.0522 0.0811 35 1 8.4813 1.3428 -1.5922 36 1 6.3817 4.1198 -3.8261 37 1 4.1351 -2.1430 0.0001 38 1 2.5643 -3.3260 -1.6340 39 1 1.3261 -5.4520 -1.6203 40 1 -0.4752 -5.8205 0.0145 41 1 -1.0359 -4.0738 1.6538 42 1 0.1921 -1.9419 1.6544 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244786206.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:03 Heat of formation + Delta-G solvation = 60.601393 kcal Electronic energy + Delta-G solvation = -24644.442406 eV Core-core repulsion = 21324.770958 eV Total energy + Delta-G solvation = -3319.671448 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.78919 -38.81361 -37.71030 -34.26048 -33.35912 -32.05908 -31.33720 -30.85767 -29.68747 -28.73887 -26.65378 -25.48325 -23.27792 -22.43317 -22.24943 -21.39747 -20.91941 -19.62681 -17.84765 -16.96413 -16.05641 -15.66470 -15.26273 -15.03923 -14.70610 -14.49297 -14.37960 -14.28250 -13.62533 -13.56042 -13.14752 -13.03582 -12.92835 -12.70450 -12.55797 -12.49824 -11.94079 -11.65953 -11.62603 -11.42834 -11.09369 -11.05494 -10.97558 -10.76293 -10.58592 -10.40404 -9.89247 -9.48980 -9.06103 -8.88796 -8.61225 -8.19722 -8.14209 -7.95433 -7.39570 -7.18982 -4.79055 1.14708 1.44628 1.72567 2.09036 2.52154 2.54863 2.98252 3.08180 3.18109 3.79633 3.83654 4.32924 4.43491 4.81847 4.96742 4.98695 5.15585 5.26658 5.30121 5.33739 5.49834 5.51631 5.57670 5.67768 5.74805 5.79935 5.92067 5.98039 6.03057 6.08207 6.10803 6.22571 6.35111 6.40572 6.48316 6.52390 6.56433 6.66284 6.68228 6.85368 6.87957 6.99742 7.05109 7.10001 7.14852 7.34248 7.50674 7.65641 7.85133 8.11765 8.36149 8.53068 9.30794 9.80545 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.017093 B = 0.003880 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.663016 B = 7214.230740 C = 8056.143980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.093 4.093 3 C -0.123 4.123 4 C -0.084 4.084 5 C 0.013 3.987 6 C -0.218 4.218 7 C 0.137 3.863 8 N -0.579 5.579 9 C 0.114 3.886 10 C -0.283 4.283 11 C 0.123 3.877 12 C -0.424 4.424 13 H 0.100 0.900 14 C 0.087 3.913 15 N -0.786 5.786 16 Si 0.911 3.089 17 H -0.266 1.266 18 H -0.287 1.287 19 H -0.244 1.244 20 C -0.106 4.106 21 C -0.063 4.063 22 C -0.026 4.026 23 C -0.109 4.109 24 C -0.120 4.120 25 C -0.129 4.129 26 C -0.124 4.124 27 C -0.109 4.109 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.116 0.884 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.108 0.892 36 H 0.290 0.710 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.184 -6.743 4.803 13.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.093 4.093 3 C -0.141 4.141 4 C -0.102 4.102 5 C 0.013 3.987 6 C -0.223 4.223 7 C -0.019 4.019 8 N -0.293 5.293 9 C -0.036 4.036 10 C -0.305 4.305 11 C 0.115 3.885 12 C -0.453 4.453 13 H 0.118 0.882 14 C -0.136 4.136 15 N -0.409 5.409 16 Si 0.736 3.264 17 H -0.192 1.192 18 H -0.214 1.214 19 H -0.167 1.167 20 C -0.124 4.124 21 C -0.063 4.063 22 C -0.026 4.026 23 C -0.127 4.127 24 C -0.138 4.138 25 C -0.147 4.147 26 C -0.142 4.142 27 C -0.127 4.127 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.134 0.866 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.126 0.874 36 H 0.101 0.899 37 H 0.135 0.865 38 H 0.142 0.858 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.137 0.863 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.744 -7.062 5.182 13.102 hybrid contribution 0.255 1.030 -0.609 1.224 sum -9.488 -6.032 4.573 12.138 Atomic orbital electron populations 1.20818 0.92012 1.02318 1.01472 1.19739 0.95186 0.92242 1.02164 1.20810 0.94279 0.96741 1.02253 1.21422 0.93159 0.98566 0.97064 1.18532 0.92267 0.91983 0.95951 1.19501 0.91247 1.09459 1.02137 1.22223 0.89910 0.94373 0.95378 1.67410 1.08037 1.26233 1.27643 1.21673 0.98387 0.92456 0.91037 1.21639 0.95426 1.08251 1.05210 1.17814 0.90951 0.90218 0.89556 1.19521 1.05378 1.04311 1.16082 0.88207 1.26264 0.96836 0.97129 0.93374 1.69623 1.37556 1.17637 1.16049 0.86309 0.80323 0.76914 0.82821 1.19226 1.21426 1.16712 1.21267 0.92251 0.97618 1.01298 1.18419 0.92693 0.91024 1.04200 1.18852 0.95268 0.93198 0.95282 1.21332 0.99779 0.93029 0.98536 1.21078 0.96423 0.97231 0.99105 1.21127 0.98191 0.99134 0.96212 1.21046 1.00109 0.93861 0.99147 1.21276 0.95670 0.97281 0.98482 0.91860 0.92090 0.91725 0.86610 0.85460 0.85577 0.85897 0.87417 0.89939 0.86526 0.85782 0.86183 0.86466 0.86284 0.85915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 8.45 36.00 0.30 -1.07 16 2 C -0.09 -1.48 5.88 -104.18 -0.61 -2.09 16 3 C -0.12 -2.08 9.67 -39.69 -0.38 -2.46 16 4 C -0.08 -1.65 8.17 -39.11 -0.32 -1.97 16 5 C 0.01 0.27 5.00 -104.94 -0.52 -0.25 16 6 C -0.22 -4.92 5.53 -104.04 -0.58 -5.49 16 7 C 0.14 2.97 10.71 -17.22 -0.18 2.78 16 8 N -0.58 -13.09 10.32 -13.37 -0.14 -13.23 16 9 C 0.11 2.52 11.09 -18.02 -0.20 2.32 16 10 C -0.28 -6.59 7.22 -39.12 -0.28 -6.87 16 11 C 0.12 2.97 5.13 -106.26 -0.54 2.42 16 12 C -0.42 -10.64 7.69 -37.83 -0.29 -10.93 16 13 H 0.10 2.68 7.11 -52.49 -0.37 2.30 16 14 C 0.09 2.11 5.43 -17.31 -0.09 2.01 16 15 N -0.79 -19.47 13.92 55.56 0.77 -18.70 16 16 Si 0.91 19.52 24.53 -169.99 -4.17 15.35 16 17 H -0.27 -5.55 6.71 56.52 0.38 -5.17 16 18 H -0.29 -5.93 7.11 56.52 0.40 -5.53 16 19 H -0.24 -5.45 6.84 56.52 0.39 -5.06 16 20 C -0.11 -1.94 9.00 -38.82 -0.35 -2.29 16 21 C -0.06 -1.04 5.47 -104.94 -0.57 -1.62 16 22 C -0.03 -0.37 4.70 -104.89 -0.49 -0.87 16 23 C -0.11 -1.49 9.51 -39.25 -0.37 -1.86 16 24 C -0.12 -1.39 10.03 -39.63 -0.40 -1.79 16 25 C -0.13 -1.36 10.04 -39.52 -0.40 -1.76 16 26 C -0.12 -1.33 10.03 -39.63 -0.40 -1.73 16 27 C -0.11 -1.36 7.90 -39.26 -0.31 -1.67 16 28 H 0.06 0.69 7.50 -51.93 -0.39 0.30 16 29 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 30 H 0.06 0.80 6.44 -51.93 -0.33 0.47 16 31 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.13 2.61 7.38 -52.49 -0.39 2.23 16 33 H 0.13 2.43 8.05 -52.49 -0.42 2.00 16 34 H 0.12 2.33 8.06 -52.48 -0.42 1.90 16 35 H 0.11 2.44 4.77 -52.49 -0.25 2.19 16 36 H 0.29 6.48 8.29 -40.82 -0.34 6.14 16 37 H 0.12 2.05 8.03 -52.49 -0.42 1.63 16 38 H 0.12 1.70 8.04 -52.49 -0.42 1.28 16 39 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 41 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 42 H 0.12 1.40 6.86 -52.49 -0.36 1.04 16 LS Contribution 346.93 15.07 5.23 5.23 Total: -1.00 -27.03 346.93 -10.37 -37.40 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -5.07 Total: 9.11 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: -7.00 Total: -35.17 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.64 Total: -31.92 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.17 Total: 15.35 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.03 -10.37 -37.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244786206.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.006 kcal (2) G-P(sol) polarization free energy of solvation -27.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds