Wall clock time and date at job start Tue Mar 31 2020 11:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38201 * 119.91374 * 2 1 4 4 C 1.37976 * 120.27973 * 180.25345 * 3 2 1 5 5 C 1.39752 * 120.09359 * 359.74246 * 4 3 2 6 6 C 1.47867 * 120.09581 * 180.02562 * 5 4 3 7 7 C 1.39294 * 120.78046 * 129.97628 * 6 5 4 8 8 N 1.31685 * 120.66068 * 179.97438 * 7 6 5 9 9 C 1.32201 * 122.49981 * 0.02562 * 8 7 6 10 10 C 1.36488 * 121.51073 * 0.02562 * 9 8 7 11 11 C 1.41115 * 119.10340 * 359.72147 * 10 9 8 12 12 C 1.40936 * 121.10976 * 180.29479 * 11 10 9 13 13 H 1.07999 * 120.00173 * 150.48904 * 12 11 10 14 14 C 1.40179 * 119.99906 * 330.50041 * 12 11 10 15 15 N 1.30684 * 119.99831 * 162.07503 * 14 12 11 16 16 Si 1.86800 * 119.99883 * 342.06610 * 14 12 11 17 17 H 1.48499 * 109.47237 * 95.35508 * 16 14 12 18 18 H 1.48497 * 109.46950 * 215.35838 * 16 14 12 19 19 H 1.48506 * 109.47053 * 335.35433 * 16 14 12 20 20 C 1.39448 * 119.81569 * 0.02562 * 5 4 3 21 21 C 1.39065 * 119.72586 * 359.97438 * 20 5 4 22 22 C 1.48407 * 120.05076 * 179.97438 * 21 20 5 23 23 C 1.39339 * 120.11693 * 310.00519 * 22 21 20 24 24 C 1.38021 * 119.87355 * 180.02562 * 23 22 21 25 25 C 1.38323 * 120.12057 * 0.25599 * 24 23 22 26 26 C 1.38319 * 120.24117 * 359.48701 * 25 24 23 27 27 C 1.38017 * 120.12615 * 0.51148 * 26 25 24 28 28 H 1.08992 * 109.47415 * 270.26011 * 1 2 3 29 29 H 1.09005 * 109.46760 * 30.25726 * 1 2 3 30 30 H 1.08997 * 109.47320 * 150.24818 * 1 2 3 31 31 H 1.08000 * 119.85903 * 0.02562 * 3 2 1 32 32 H 1.08002 * 119.95502 * 179.77006 * 4 3 2 33 33 H 1.07992 * 119.66961 * 359.97438 * 7 6 5 34 34 H 1.08004 * 119.24624 * 179.97438 * 9 8 7 35 35 H 1.07998 * 120.45021 * 179.97438 * 10 9 8 36 36 H 0.97001 * 119.99762 * 179.97438 * 15 14 12 37 37 H 1.07998 * 120.14273 * 180.02562 * 20 5 4 38 38 H 1.07995 * 120.06085 * 0.04312 * 23 22 21 39 39 H 1.07999 * 119.94138 * 179.97438 * 24 23 22 40 40 H 1.08006 * 119.87828 * 179.74384 * 25 24 23 41 41 H 1.08007 * 119.93989 * 180.23171 * 26 25 24 42 42 H 1.07997 * 120.06799 * 179.76609 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1979 0.0000 4 6 3.5759 1.2067 -0.0053 5 6 4.2844 0.0021 -0.0052 6 6 5.7630 0.0115 -0.0103 7 6 6.4838 -0.7510 0.9059 8 7 7.8006 -0.7412 0.8989 9 6 8.5011 -0.0212 0.0395 10 6 7.8922 0.7612 -0.8986 11 6 6.4826 0.7957 -0.9535 12 6 5.8101 1.5840 -1.9088 13 1 4.8399 1.2802 -2.2733 14 6 6.4007 2.7623 -2.3862 15 7 5.9733 3.3043 -3.4959 16 14 7.7983 3.5580 -1.4359 17 1 9.0975 3.1085 -1.9973 18 1 7.6951 5.0351 -1.5480 19 1 7.7132 3.1628 -0.0069 20 6 3.5929 -1.2089 -0.0003 21 6 2.2023 -1.2089 0.0049 22 6 1.4592 -2.4936 0.0096 23 6 1.7762 -3.4880 -0.9135 24 6 1.0815 -4.6806 -0.9050 25 6 0.0687 -4.8874 0.0140 26 6 -0.2466 -3.9056 0.9360 27 6 0.4416 -2.7093 0.9366 28 1 -0.3634 0.0047 1.0276 29 1 -0.3633 0.8877 -0.5179 30 1 -0.3634 -0.8922 -0.5100 31 1 1.6525 2.1311 0.0004 32 1 4.1092 2.1459 -0.0090 33 1 5.9575 -1.3561 1.6291 34 1 9.5799 -0.0522 0.0811 35 1 8.4813 1.3428 -1.5922 36 1 6.3817 4.1198 -3.8261 37 1 4.1351 -2.1430 0.0001 38 1 2.5643 -3.3260 -1.6340 39 1 1.3261 -5.4520 -1.6203 40 1 -0.4752 -5.8205 0.0145 41 1 -1.0359 -4.0738 1.6538 42 1 0.1921 -1.9419 1.6544 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244786206.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:02 Heat of formation + Delta-G solvation = 49.567803 kcal Electronic energy + Delta-G solvation = -24644.920859 eV Core-core repulsion = 21324.770958 eV Total energy + Delta-G solvation = -3320.149901 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.09606 -40.30662 -38.98231 -36.06338 -34.79163 -33.25532 -33.09676 -31.89925 -31.13977 -29.92347 -28.27380 -27.03086 -24.58204 -23.78019 -23.40178 -23.05436 -22.19224 -21.00116 -19.69800 -18.16886 -17.56920 -17.07001 -16.68668 -16.28608 -16.11968 -16.09373 -15.78674 -15.59269 -15.08971 -14.70155 -14.56926 -14.42146 -14.20531 -14.08297 -14.01174 -13.55170 -13.46534 -13.05670 -12.99862 -12.81086 -12.63179 -12.54365 -12.40991 -12.16079 -11.86320 -11.74064 -11.57723 -11.24146 -10.35639 -10.15548 -9.95048 -9.88924 -9.79770 -9.25862 -9.03691 -8.88728 -6.68077 0.00527 0.23333 0.53662 0.71541 0.79157 0.94852 1.22723 1.37120 1.43431 2.04203 2.58648 2.79616 3.01294 3.46631 3.70676 3.83410 4.00673 4.02231 4.13274 4.17523 4.20696 4.31211 4.32648 4.44078 4.55982 4.59319 4.62509 4.69095 4.76195 4.82763 4.85780 4.94884 5.04555 5.07463 5.16837 5.18575 5.21070 5.32421 5.34755 5.51725 5.60078 5.62484 5.64550 5.69731 5.82670 5.90370 6.04864 6.12493 6.17472 6.24025 6.53073 6.63821 7.51794 8.02106 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.017093 B = 0.003880 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.663016 B = 7214.230740 C = 8056.143980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.089 4.089 3 C -0.125 4.125 4 C -0.104 4.104 5 C -0.015 4.015 6 C -0.220 4.220 7 C 0.129 3.871 8 N -0.582 5.582 9 C 0.112 3.888 10 C -0.297 4.297 11 C 0.106 3.894 12 C -0.444 4.444 13 H 0.067 0.933 14 C 0.058 3.942 15 N -0.821 5.821 16 Si 0.959 3.041 17 H -0.252 1.252 18 H -0.272 1.272 19 H -0.261 1.261 20 C -0.113 4.113 21 C -0.060 4.060 22 C -0.050 4.050 23 C -0.128 4.128 24 C -0.125 4.125 25 C -0.122 4.122 26 C -0.120 4.120 27 C -0.111 4.111 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.138 0.862 32 H 0.106 0.894 33 H 0.149 0.851 34 H 0.158 0.842 35 H 0.113 0.887 36 H 0.300 0.700 37 H 0.116 0.884 38 H 0.109 0.891 39 H 0.139 0.861 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.820 -8.245 6.228 15.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.089 4.089 3 C -0.143 4.143 4 C -0.122 4.122 5 C -0.016 4.016 6 C -0.224 4.224 7 C -0.026 4.026 8 N -0.297 5.297 9 C -0.039 4.039 10 C -0.319 4.319 11 C 0.098 3.902 12 C -0.474 4.474 13 H 0.085 0.915 14 C -0.161 4.161 15 N -0.445 5.445 16 Si 0.783 3.217 17 H -0.177 1.177 18 H -0.199 1.199 19 H -0.185 1.185 20 C -0.131 4.131 21 C -0.060 4.060 22 C -0.050 4.050 23 C -0.147 4.147 24 C -0.142 4.142 25 C -0.140 4.140 26 C -0.138 4.138 27 C -0.129 4.129 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.156 0.844 32 H 0.124 0.876 33 H 0.166 0.834 34 H 0.175 0.825 35 H 0.130 0.870 36 H 0.111 0.889 37 H 0.134 0.866 38 H 0.127 0.873 39 H 0.157 0.843 40 H 0.166 0.834 41 H 0.168 0.832 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.391 -8.568 6.598 15.707 hybrid contribution 0.602 1.299 -0.984 1.737 sum -10.789 -7.269 5.614 14.169 Atomic orbital electron populations 1.20864 0.89046 1.03049 1.03193 1.20180 0.97304 0.91405 1.00049 1.21060 0.93269 0.98410 1.01532 1.21333 0.94480 0.97477 0.98897 1.18552 0.91475 0.93148 0.98417 1.19837 0.92732 1.08441 1.01407 1.22576 0.89913 0.94499 0.95585 1.67491 1.08365 1.26148 1.27652 1.22168 1.00053 0.91474 0.90194 1.21780 0.95041 1.09055 1.06055 1.18056 0.91864 0.90559 0.89731 1.19337 1.04587 1.05795 1.17670 0.91480 1.26809 0.98503 0.96988 0.93790 1.69631 1.39109 1.18669 1.17091 0.85571 0.78664 0.76924 0.80580 1.17698 1.19863 1.18475 1.21293 0.93401 0.96690 1.01687 1.18705 0.92082 0.92713 1.02475 1.18805 0.96666 0.92448 0.97080 1.21363 1.00329 0.94180 0.98779 1.21338 0.96370 0.96711 0.99827 1.21545 0.97289 1.00204 0.94972 1.21426 1.00124 0.92880 0.99374 1.21421 0.95051 0.98452 0.98009 0.89463 0.90953 0.91381 0.84433 0.87614 0.83354 0.82477 0.86969 0.88938 0.86591 0.87269 0.84324 0.83362 0.83191 0.84937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.37 8.45 71.24 0.60 -1.77 16 2 C -0.09 -2.77 5.88 -19.58 -0.12 -2.89 16 3 C -0.12 -4.29 9.67 22.20 0.21 -4.08 16 4 C -0.10 -4.30 8.17 22.57 0.18 -4.11 16 5 C -0.02 -0.65 5.00 -20.07 -0.10 -0.75 16 6 C -0.22 -10.27 5.53 -19.49 -0.11 -10.38 16 7 C 0.13 5.65 10.71 84.97 0.91 6.56 16 8 N -0.58 -26.00 10.32 -196.21 -2.02 -28.02 16 9 C 0.11 4.84 11.09 84.23 0.93 5.78 16 10 C -0.30 -13.96 7.22 22.57 0.16 -13.80 16 11 C 0.11 5.33 5.13 -20.92 -0.11 5.22 16 12 C -0.44 -23.63 7.69 23.40 0.18 -23.45 16 13 H 0.07 3.91 7.11 -2.91 -0.02 3.89 16 14 C 0.06 2.94 5.43 85.34 0.46 3.41 16 15 N -0.82 -42.14 13.92 21.86 0.30 -41.83 16 16 Si 0.96 40.73 24.53 68.60 1.68 42.41 16 17 H -0.25 -10.03 6.71 99.48 0.67 -9.37 16 18 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 19 H -0.26 -11.68 6.84 99.48 0.68 -11.00 16 20 C -0.11 -4.27 9.00 22.76 0.20 -4.06 16 21 C -0.06 -1.97 5.47 -20.07 -0.11 -2.08 16 22 C -0.05 -1.39 4.70 -20.04 -0.09 -1.48 16 23 C -0.13 -3.45 9.51 22.48 0.21 -3.23 16 24 C -0.12 -2.61 10.03 22.24 0.22 -2.39 16 25 C -0.12 -2.12 10.04 22.31 0.22 -1.90 16 26 C -0.12 -2.12 10.03 22.24 0.22 -1.90 16 27 C -0.11 -2.47 7.90 22.48 0.18 -2.29 16 28 H 0.09 1.59 7.50 -2.39 -0.02 1.57 16 29 H 0.07 1.49 8.09 -2.38 -0.02 1.47 16 30 H 0.07 1.52 6.44 -2.39 -0.02 1.51 16 31 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 32 H 0.11 4.73 7.38 -2.91 -0.02 4.70 16 33 H 0.15 5.70 8.05 -2.91 -0.02 5.68 16 34 H 0.16 5.60 8.06 -2.91 -0.02 5.58 16 35 H 0.11 5.09 4.77 -2.91 -0.01 5.07 16 36 H 0.30 13.72 8.29 -92.71 -0.77 12.95 16 37 H 0.12 4.27 8.03 -2.91 -0.02 4.25 16 38 H 0.11 3.14 8.04 -2.91 -0.02 3.11 16 39 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16 40 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 41 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 42 H 0.13 2.61 6.86 -2.91 -0.02 2.59 16 Total: -1.00 -60.75 346.93 5.22 -55.54 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: 0.97 Total: 31.51 kcal Atomic # 6 Polarization: -63.88 SS G_CDS: 4.28 Total: -59.60 kcal Atomic # 7 Polarization: -68.14 SS G_CDS: -1.72 Total: -69.86 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 1.68 Total: 42.41 kcal Total: -60.75 5.22 -55.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244786206.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.106 kcal (2) G-P(sol) polarization free energy of solvation -60.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds