Wall clock time and date at job start Tue Mar 31 2020 11:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38205 * 119.91389 * 2 1 4 4 C 1.37991 * 120.26881 * 180.25726 * 3 2 1 5 5 C 1.39701 * 120.10158 * 359.79142 * 4 3 2 6 6 C 1.47986 * 120.08872 * 179.97438 * 5 4 3 7 7 C 1.40260 * 120.34496 * 359.97438 * 6 5 4 8 8 C 1.36688 * 118.60524 * 180.02562 * 7 6 5 9 9 C 1.40868 * 119.25132 * 359.97438 * 8 7 6 10 10 C 1.40997 * 119.67634 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00268 * 359.97438 * 10 9 8 12 12 C 1.40099 * 119.99586 * 180.02562 * 10 9 8 13 13 N 1.30715 * 120.00397 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00065 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47269 * 89.99647 * 14 12 10 16 16 H 1.48501 * 109.47328 * 209.99789 * 14 12 10 17 17 H 1.48504 * 109.46874 * 330.00016 * 14 12 10 18 18 N 1.33773 * 120.64036 * 0.02562 * 9 8 7 19 19 C 1.31196 * 121.50563 * 359.69927 * 18 9 8 20 20 C 1.39404 * 119.82811 * 359.97438 * 5 4 3 21 21 C 1.39075 * 119.72746 * 0.02562 * 20 5 4 22 22 C 1.48409 * 120.05111 * 179.97438 * 21 20 5 23 23 C 1.39327 * 120.11986 * 310.00232 * 22 21 20 24 24 C 1.38022 * 119.87992 * 180.02562 * 23 22 21 25 25 C 1.38316 * 120.11626 * 0.26040 * 24 23 22 26 26 C 1.38320 * 120.24640 * 359.47918 * 25 24 23 27 27 C 1.38022 * 120.11943 * 0.52114 * 26 25 24 28 28 H 1.09000 * 109.46961 * 270.20788 * 1 2 3 29 29 H 1.08998 * 109.46969 * 30.20731 * 1 2 3 30 30 H 1.08997 * 109.47230 * 150.21021 * 1 2 3 31 31 H 1.07993 * 119.86269 * 0.02753 * 3 2 1 32 32 H 1.08002 * 119.94572 * 179.76511 * 4 3 2 33 33 H 1.07998 * 120.69404 * 359.97438 * 7 6 5 34 34 H 1.07999 * 120.36756 * 179.97438 * 8 7 6 35 35 H 0.97000 * 119.99927 * 180.02562 * 13 12 10 36 36 H 1.08005 * 119.65733 * 180.28417 * 19 18 9 37 37 H 1.08000 * 120.13711 * 180.02562 * 20 5 4 38 38 H 1.08007 * 120.05874 * 0.04218 * 23 22 21 39 39 H 1.08002 * 119.93878 * 179.97438 * 24 23 22 40 40 H 1.08007 * 119.87827 * 179.72305 * 25 24 23 41 41 H 1.07996 * 119.94206 * 180.23737 * 26 25 24 42 42 H 1.07993 * 120.06734 * 179.76404 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1979 0.0000 4 6 3.5761 1.2065 -0.0054 5 6 4.2843 0.0022 -0.0064 6 6 5.7641 0.0118 -0.0127 7 6 6.4649 1.2267 -0.0182 8 6 7.8313 1.1940 -0.0245 9 6 8.4901 -0.0512 -0.0247 10 6 9.8993 -0.0954 -0.0306 11 1 10.4684 0.8225 -0.0354 12 6 10.5613 -1.3301 -0.0314 13 7 9.8726 -2.4411 -0.0261 14 14 12.4284 -1.3888 -0.0399 15 1 12.9297 -1.4017 1.3579 16 1 12.8819 -2.6176 -0.7397 17 1 12.9580 -0.1937 -0.7447 18 7 7.7915 -1.1920 -0.0193 19 6 6.4796 -1.1926 -0.0079 20 6 3.5933 -1.2085 -0.0015 21 6 2.2025 -1.2088 0.0039 22 6 1.4596 -2.4935 0.0086 23 6 1.7767 -3.4879 -0.9144 24 6 1.0822 -4.6806 -0.9060 25 6 0.0695 -4.8876 0.0131 26 6 -0.2459 -3.9060 0.9351 27 6 0.4421 -2.7094 0.9357 28 1 -0.3633 0.0037 1.0277 29 1 -0.3633 0.8881 -0.5170 30 1 -0.3633 -0.8918 -0.5105 31 1 1.6526 2.1311 0.0004 32 1 4.1094 2.1456 -0.0092 33 1 5.9359 2.1683 -0.0183 34 1 8.3995 2.1125 -0.0292 35 1 10.3310 -3.2959 -0.0263 36 1 5.9457 -2.1314 0.0008 37 1 4.1357 -2.1424 -0.0019 38 1 2.5647 -3.3257 -1.6351 39 1 1.3270 -5.4519 -1.6213 40 1 -0.4744 -5.8207 0.0133 41 1 -1.0349 -4.0743 1.6530 42 1 0.1926 -1.9421 1.6535 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244786486.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:46 Heat of formation + Delta-G solvation = 57.275328 kcal Electronic energy + Delta-G solvation = -23943.097128 eV Core-core repulsion = 20623.281451 eV Total energy + Delta-G solvation = -3319.815677 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.02303 -40.11073 -38.97168 -35.85762 -34.46615 -33.29625 -32.56084 -31.93235 -31.28529 -29.94843 -28.54747 -26.31642 -24.86957 -23.53717 -23.37551 -23.24032 -21.96784 -21.01419 -19.47498 -18.11229 -17.61336 -17.06999 -16.56166 -16.44790 -15.84847 -15.70201 -15.66979 -15.35425 -14.64618 -14.60183 -14.38068 -14.32175 -14.30948 -14.06349 -13.70717 -13.54574 -13.10231 -13.05814 -12.85857 -12.75758 -12.74252 -12.50262 -12.28402 -12.05140 -11.85226 -11.80105 -11.49603 -11.31102 -10.45918 -10.16151 -10.02194 -9.81749 -9.56543 -9.24209 -8.76284 -8.39165 -6.53069 -0.04298 0.19843 0.51772 0.80172 1.03667 1.25712 1.38587 1.53262 1.57452 2.17971 2.67447 2.89339 3.10282 3.67659 3.90529 3.93917 4.00918 4.07408 4.09747 4.15796 4.28042 4.30005 4.33053 4.43530 4.56871 4.60241 4.70981 4.79377 4.81441 4.85946 4.88518 5.00521 5.05814 5.10733 5.16517 5.19148 5.30939 5.42478 5.44451 5.52896 5.58167 5.61942 5.63198 5.75803 5.84401 6.00863 6.05192 6.11394 6.19033 6.23388 6.62079 6.85993 8.08541 8.33871 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.017257 B = 0.003015 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.147034 B = 9284.158141 C =10723.577358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.106 4.106 3 C -0.107 4.107 4 C -0.142 4.142 5 C -0.005 4.005 6 C -0.264 4.264 7 C -0.039 4.039 8 C -0.286 4.286 9 C 0.217 3.783 10 C -0.448 4.448 11 H 0.096 0.904 12 C 0.019 3.981 13 N -0.746 5.746 14 Si 0.993 3.007 15 H -0.261 1.261 16 H -0.267 1.267 17 H -0.252 1.252 18 N -0.522 5.522 19 C 0.129 3.871 20 C -0.136 4.136 21 C -0.050 4.050 22 C -0.054 4.054 23 C -0.128 4.128 24 C -0.126 4.126 25 C -0.123 4.123 26 C -0.122 4.122 27 C -0.112 4.112 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.149 0.851 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.116 0.884 35 H 0.282 0.718 36 H 0.128 0.872 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.139 0.861 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.018 -0.809 0.459 18.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.106 4.106 3 C -0.125 4.125 4 C -0.160 4.160 5 C -0.006 4.006 6 C -0.270 4.270 7 C -0.062 4.062 8 C -0.309 4.309 9 C 0.094 3.906 10 C -0.478 4.478 11 H 0.114 0.886 12 C -0.204 4.204 13 N -0.367 5.367 14 Si 0.812 3.188 15 H -0.185 1.185 16 H -0.192 1.192 17 H -0.175 1.175 18 N -0.234 5.234 19 C -0.038 4.038 20 C -0.154 4.154 21 C -0.050 4.050 22 C -0.054 4.054 23 C -0.146 4.146 24 C -0.144 4.144 25 C -0.141 4.141 26 C -0.139 4.139 27 C -0.130 4.130 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.167 0.833 32 H 0.146 0.854 33 H 0.151 0.849 34 H 0.134 0.866 35 H 0.093 0.907 36 H 0.145 0.855 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.156 0.844 40 H 0.166 0.834 41 H 0.168 0.832 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -17.482 -1.809 0.446 17.581 hybrid contribution 0.857 0.607 -0.109 1.056 sum -16.625 -1.202 0.337 16.672 Atomic orbital electron populations 1.20839 0.89198 1.03106 1.02924 1.20165 0.97237 0.91534 1.01650 1.21108 0.93227 0.98307 0.99811 1.21379 0.94742 0.97162 1.02718 1.18746 0.91291 0.93671 0.96886 1.19354 0.92468 0.94379 1.20762 1.21003 0.93545 0.97121 0.94546 1.21654 0.95199 0.98098 1.15905 1.19144 0.94794 0.87638 0.89041 1.20138 0.90781 0.94874 1.42021 0.88551 1.27162 1.06337 0.94435 0.92498 1.70225 1.39603 0.99179 1.27694 0.85052 0.74716 0.79393 0.79636 1.18539 1.19159 1.17526 1.68729 1.06168 1.29494 1.19039 1.23015 0.91256 0.96406 0.93100 1.21211 0.93518 0.97127 1.03576 1.18723 0.91919 0.92859 1.01496 1.18877 0.96648 0.92844 0.97056 1.21379 1.00177 0.94125 0.98925 1.21353 0.96375 0.96780 0.99880 1.21545 0.97353 1.00174 0.95006 1.21428 1.00211 0.92940 0.99344 1.21421 0.95128 0.98451 0.97994 0.90070 0.90381 0.91776 0.83307 0.85438 0.84935 0.86565 0.90671 0.85483 0.87424 0.87040 0.84363 0.83428 0.83239 0.84961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.99 8.45 71.24 0.60 -1.39 16 2 C -0.11 -2.84 5.88 -19.58 -0.12 -2.96 16 3 C -0.11 -2.88 9.67 22.20 0.21 -2.67 16 4 C -0.14 -4.66 9.44 22.56 0.21 -4.44 16 5 C -0.01 -0.20 5.88 -20.06 -0.12 -0.32 16 6 C -0.26 -12.20 5.92 -19.75 -0.12 -12.32 16 7 C -0.04 -1.75 9.46 22.40 0.21 -1.53 16 8 C -0.29 -14.16 9.76 22.55 0.22 -13.94 16 9 C 0.22 12.22 6.55 40.17 0.26 12.48 16 10 C -0.45 -24.19 9.12 23.40 0.21 -23.98 16 11 H 0.10 4.77 7.85 -2.91 -0.02 4.75 16 12 C 0.02 0.94 5.50 85.31 0.47 1.41 16 13 N -0.75 -40.44 11.44 21.85 0.25 -40.19 16 14 Si 0.99 37.41 29.56 68.60 2.03 39.44 16 15 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 16 H -0.27 -9.63 7.11 99.48 0.71 -8.93 16 17 H -0.25 -9.05 7.11 99.48 0.71 -8.34 16 18 N -0.52 -30.09 7.83 -188.23 -1.47 -31.56 16 19 C 0.13 6.62 10.60 85.24 0.90 7.53 16 20 C -0.14 -5.03 8.89 22.75 0.20 -4.83 16 21 C -0.05 -1.56 5.47 -20.07 -0.11 -1.67 16 22 C -0.05 -1.48 4.70 -20.04 -0.09 -1.58 16 23 C -0.13 -3.41 9.51 22.48 0.21 -3.20 16 24 C -0.13 -2.69 10.03 22.24 0.22 -2.47 16 25 C -0.12 -2.19 10.04 22.31 0.22 -1.97 16 26 C -0.12 -2.18 10.03 22.24 0.22 -1.96 16 27 C -0.11 -2.49 7.90 22.48 0.18 -2.31 16 28 H 0.08 1.30 7.50 -2.39 -0.02 1.28 16 29 H 0.08 1.23 8.08 -2.39 -0.02 1.21 16 30 H 0.06 1.27 6.44 -2.39 -0.02 1.25 16 31 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 32 H 0.13 3.82 6.24 -2.91 -0.02 3.81 16 33 H 0.13 4.89 6.29 -2.91 -0.02 4.88 16 34 H 0.12 5.19 8.06 -2.91 -0.02 5.17 16 35 H 0.28 13.75 8.29 -92.71 -0.77 12.98 16 36 H 0.13 6.09 6.21 -2.91 -0.02 6.07 16 37 H 0.11 4.14 6.19 -2.91 -0.02 4.12 16 38 H 0.11 3.13 8.04 -2.91 -0.02 3.11 16 39 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 40 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 41 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 42 H 0.13 2.59 6.86 -2.91 -0.02 2.57 16 Total: -1.00 -66.39 351.24 5.87 -60.52 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: 1.04 Total: 33.89 kcal Atomic # 6 Polarization: -66.12 SS G_CDS: 4.02 Total: -62.10 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: -1.22 Total: -71.75 kcal Atomic # 14 Polarization: 37.41 SS G_CDS: 2.03 Total: 39.44 kcal Total: -66.39 5.87 -60.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244786486.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.799 kcal (2) G-P(sol) polarization free energy of solvation -66.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds