Wall clock time and date at job start Tue Mar 31 2020 11:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37642 * 120.08146 * 2 1 4 4 C 1.39596 * 119.90644 * 179.97438 * 3 2 1 5 5 C 1.48214 * 119.96757 * 179.97438 * 4 3 2 6 6 C 1.39447 * 120.13224 * 359.72177 * 5 4 3 7 7 C 1.37990 * 119.86915 * 179.69961 * 6 5 4 8 8 C 1.38353 * 120.12801 * 0.59821 * 7 6 5 9 9 C 1.38357 * 120.26339 * 359.68040 * 8 7 6 10 10 C 1.37977 * 120.12926 * 0.02562 * 9 8 7 11 11 C 1.39600 * 120.06335 * 359.97402 * 4 3 2 12 12 C 1.36573 * 120.15283 * 359.76488 * 11 4 3 13 13 C 1.39851 * 120.09802 * 0.51440 * 12 11 4 14 14 C 1.47658 * 120.03414 * 179.73763 * 13 12 11 15 15 C 1.39776 * 120.65648 * 64.97307 * 14 13 12 16 16 C 1.38327 * 118.47017 * 180.28728 * 15 14 13 17 17 C 1.39090 * 119.73813 * 359.72770 * 16 15 14 18 18 N 1.31258 * 121.36131 * 359.97438 * 17 16 15 19 19 C 1.33723 * 121.63817 * 0.02562 * 18 17 16 20 20 C 1.40745 * 119.94761 * 180.02562 * 19 18 17 21 21 H 1.08002 * 120.00336 * 180.02562 * 20 19 18 22 22 C 1.40145 * 119.99749 * 359.71665 * 20 19 18 23 23 N 1.30694 * 120.00245 * 0.28145 * 22 20 19 24 24 Si 1.86803 * 119.99830 * 180.27948 * 22 20 19 25 25 H 1.48496 * 109.47491 * 60.00052 * 24 22 20 26 26 H 1.48504 * 109.47032 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46993 * 300.00158 * 24 22 20 28 28 H 1.09000 * 109.46522 * 270.02229 * 1 2 3 29 29 H 1.08995 * 109.46807 * 30.02345 * 1 2 3 30 30 H 1.08997 * 109.47065 * 150.02205 * 1 2 3 31 31 H 1.08004 * 120.04396 * 359.95611 * 3 2 1 32 32 H 1.08002 * 120.06719 * 359.97438 * 6 5 4 33 33 H 1.07993 * 119.94064 * 180.29994 * 7 6 5 34 34 H 1.08001 * 119.87211 * 179.69709 * 8 7 6 35 35 H 1.08001 * 119.93171 * 179.97438 * 9 8 7 36 36 H 1.08007 * 120.06286 * 180.02562 * 10 9 8 37 37 H 1.07996 * 119.92235 * 180.02562 * 11 4 3 38 38 H 1.08000 * 119.94899 * 180.25215 * 12 11 4 39 39 H 1.08005 * 120.76627 * 0.02562 * 15 14 13 40 40 H 1.07997 * 120.13249 * 179.70587 * 16 15 14 41 41 H 1.08004 * 119.32159 * 180.02562 * 17 16 15 42 42 H 0.97005 * 120.00041 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1910 0.0000 4 6 3.5928 1.1868 0.0005 5 6 4.3371 2.4685 0.0000 6 6 3.6457 3.6795 -0.0070 7 6 4.3440 4.8696 -0.0012 8 6 5.7275 4.8629 -0.0010 9 6 6.4191 3.6646 0.0000 10 6 5.7316 2.4683 0.0004 11 6 4.2885 -0.0236 0.0016 12 6 3.6065 -1.2068 0.0070 13 6 2.2080 -1.2102 0.0006 14 6 1.4721 -2.4904 0.0006 15 6 1.5528 -3.3589 1.0928 16 6 0.8496 -4.5490 1.0423 17 6 0.0820 -4.8498 -0.0779 18 7 0.0074 -4.0252 -1.0964 19 6 0.6644 -2.8606 -1.1056 20 6 0.5587 -2.0029 -2.2165 21 1 1.0892 -1.0622 -2.2250 22 6 -0.2300 -2.3725 -3.3145 23 7 -0.8716 -3.5111 -3.3045 24 14 -0.3641 -1.2378 -4.7923 25 1 0.9845 -1.0229 -5.3755 26 1 -1.2518 -1.8542 -5.8107 27 1 -0.9322 0.0661 -4.3652 28 1 -0.3632 0.0004 1.0277 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6589 2.1276 -0.0007 32 1 2.5657 3.6859 -0.0124 33 1 3.8097 5.8081 -0.0017 34 1 6.2700 5.7968 -0.0015 35 1 7.4991 3.6656 -0.0003 36 1 6.2725 1.5334 0.0016 37 1 5.3684 -0.0242 0.0025 38 1 4.1480 -2.1412 0.0120 39 1 2.1539 -3.1085 1.9545 40 1 0.8967 -5.2421 1.8692 41 1 -0.4647 -5.7807 -0.1101 42 1 -1.4178 -3.7667 -4.0643 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244834400.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:43 Heat of formation + Delta-G solvation = 63.762095 kcal Electronic energy + Delta-G solvation = -24677.587979 eV Core-core repulsion = 21358.053589 eV Total energy + Delta-G solvation = -3319.534390 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.02738 -40.05791 -38.88781 -35.60476 -34.66213 -33.34939 -32.22281 -31.83081 -31.73401 -29.21727 -28.16830 -27.06673 -24.87095 -23.78112 -23.32149 -22.65098 -21.91870 -20.82706 -19.36958 -18.31126 -17.54270 -16.87966 -16.54049 -16.47735 -16.09780 -15.99577 -15.17959 -14.99369 -14.85633 -14.55084 -14.50429 -14.30238 -14.03891 -13.80559 -13.74446 -13.62848 -13.12243 -12.92329 -12.86114 -12.83280 -12.66578 -12.39558 -12.19864 -12.10716 -11.88414 -11.59039 -11.48656 -11.19878 -10.47559 -10.03260 -9.81719 -9.61668 -9.50388 -9.40617 -8.61940 -8.29060 -6.46313 -0.20022 0.54426 0.61886 0.78934 1.05231 1.26232 1.37010 1.47355 1.52171 2.19215 2.76257 2.84472 3.21827 3.73898 3.82652 3.95665 4.02743 4.10767 4.18875 4.26168 4.32417 4.36100 4.47251 4.49847 4.51644 4.61844 4.74980 4.79754 4.86741 4.88867 4.99256 5.06833 5.08629 5.16225 5.23029 5.24389 5.39063 5.42334 5.53708 5.59353 5.64807 5.68802 5.70469 5.85598 5.88917 6.01953 6.13226 6.17151 6.23560 6.32237 6.72432 6.99659 8.18836 8.41415 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.014339 B = 0.004056 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.268830 B = 6901.678766 C = 8127.901306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.082 4.082 3 C -0.114 4.114 4 C -0.070 4.070 5 C -0.053 4.053 6 C -0.130 4.130 7 C -0.123 4.123 8 C -0.128 4.128 9 C -0.122 4.122 10 C -0.128 4.128 11 C -0.113 4.113 12 C -0.126 4.126 13 C -0.001 4.001 14 C -0.233 4.233 15 C -0.047 4.047 16 C -0.312 4.312 17 C 0.107 3.893 18 N -0.520 5.520 19 C 0.245 3.755 20 C -0.437 4.437 21 H 0.086 0.914 22 C 0.030 3.970 23 N -0.748 5.748 24 Si 0.966 3.034 25 H -0.264 1.264 26 H -0.266 1.266 27 H -0.255 1.255 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.138 0.862 32 H 0.128 0.872 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.132 0.868 37 H 0.143 0.857 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.125 0.875 41 H 0.136 0.864 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.527 13.806 4.617 17.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.082 4.082 3 C -0.132 4.132 4 C -0.070 4.070 5 C -0.053 4.053 6 C -0.148 4.148 7 C -0.141 4.141 8 C -0.145 4.145 9 C -0.140 4.140 10 C -0.145 4.145 11 C -0.131 4.131 12 C -0.145 4.145 13 C -0.002 4.002 14 C -0.237 4.237 15 C -0.071 4.071 16 C -0.335 4.335 17 C -0.059 4.059 18 N -0.232 5.232 19 C 0.121 3.879 20 C -0.467 4.467 21 H 0.104 0.896 22 C -0.193 4.193 23 N -0.370 5.370 24 Si 0.787 3.213 25 H -0.189 1.189 26 H -0.190 1.190 27 H -0.179 1.179 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.155 0.845 32 H 0.146 0.854 33 H 0.162 0.838 34 H 0.165 0.835 35 H 0.164 0.836 36 H 0.150 0.850 37 H 0.160 0.840 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.143 0.857 41 H 0.154 0.846 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.859 13.467 3.737 16.547 hybrid contribution 0.094 -0.159 0.150 0.238 sum 8.953 13.308 3.888 16.504 Atomic orbital electron populations 1.20931 0.91454 1.03644 1.01474 1.20077 0.96309 0.92263 0.99536 1.21163 0.93443 0.97414 1.01161 1.18927 0.92821 0.92666 1.02600 1.18946 0.93735 0.91891 1.00687 1.21484 1.00601 0.92072 1.00594 1.21394 0.94973 0.98114 0.99580 1.21576 0.94397 0.99004 0.99562 1.21407 1.01130 0.91961 0.99499 1.21488 0.93007 0.99565 1.00476 1.20969 1.00412 0.91045 1.00672 1.21035 0.93144 0.98483 1.01793 1.18755 0.92782 0.91924 0.96722 1.19583 1.08433 0.97407 0.98296 1.21204 0.96519 0.93190 0.96216 1.21521 1.09241 1.00711 1.01989 1.23000 0.94986 0.98009 0.89943 1.68699 1.23868 1.04526 1.26135 1.18829 0.87780 0.89601 0.91702 1.19722 1.24105 1.03797 0.99092 0.89600 1.26882 0.93771 0.96515 1.02132 1.70190 1.17889 1.19498 1.29379 0.85488 0.79356 0.79276 0.77191 1.18851 1.18972 1.17909 0.91971 0.91126 0.91269 0.84466 0.85416 0.83802 0.83504 0.83621 0.85013 0.83970 0.86380 0.86362 0.85724 0.84644 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.63 9.16 71.24 0.65 -3.97 16 2 C -0.08 -3.21 4.86 -19.61 -0.10 -3.30 16 3 C -0.11 -3.83 9.07 22.46 0.20 -3.62 16 4 C -0.07 -2.22 5.88 -19.97 -0.12 -2.33 16 5 C -0.05 -1.41 5.88 -20.04 -0.12 -1.53 16 6 C -0.13 -3.06 9.43 22.50 0.21 -2.84 16 7 C -0.12 -2.31 10.03 22.24 0.22 -2.08 16 8 C -0.13 -2.15 10.04 22.33 0.22 -1.93 16 9 C -0.12 -2.23 10.03 22.24 0.22 -2.00 16 10 C -0.13 -2.90 9.43 22.50 0.21 -2.69 16 11 C -0.11 -3.61 9.36 22.21 0.21 -3.40 16 12 C -0.13 -4.72 9.69 22.27 0.22 -4.51 16 13 C 0.00 -0.05 4.48 -20.01 -0.09 -0.14 16 14 C -0.23 -11.10 4.66 -19.52 -0.09 -11.19 16 15 C -0.05 -2.07 9.88 22.66 0.22 -1.85 16 16 C -0.31 -13.51 10.10 22.50 0.23 -13.28 16 17 C 0.11 5.12 11.17 84.98 0.95 6.07 16 18 N -0.52 -28.69 7.85 -188.40 -1.48 -30.17 16 19 C 0.24 13.17 5.53 40.37 0.22 13.39 16 20 C -0.44 -23.07 6.79 23.35 0.16 -22.91 16 21 H 0.09 4.43 5.89 -2.91 -0.02 4.41 16 22 C 0.03 1.51 5.50 85.33 0.47 1.98 16 23 N -0.75 -39.88 11.46 21.86 0.25 -39.63 16 24 Si 0.97 38.35 29.56 68.60 2.03 40.37 16 25 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 26 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 27 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 28 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.07 2.40 8.09 -2.39 -0.02 2.38 16 30 H 0.07 3.23 4.34 -2.39 -0.01 3.22 16 31 H 0.14 3.88 6.19 -2.91 -0.02 3.86 16 32 H 0.13 2.79 6.19 -2.91 -0.02 2.78 16 33 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 34 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 35 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 36 H 0.13 2.66 6.19 -2.91 -0.02 2.64 16 37 H 0.14 3.62 6.18 -2.91 -0.02 3.60 16 38 H 0.12 4.24 8.06 -2.91 -0.02 4.21 16 39 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 40 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 41 H 0.14 5.76 8.06 -2.91 -0.02 5.74 16 42 H 0.28 13.55 8.29 -92.70 -0.77 12.78 16 Total: -1.00 -63.28 347.06 5.96 -57.32 By element: Atomic # 1 Polarization: 33.19 SS G_CDS: 1.05 Total: 34.24 kcal Atomic # 6 Polarization: -66.24 SS G_CDS: 4.11 Total: -62.13 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: -1.23 Total: -69.80 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.37 kcal Total: -63.28 5.96 -57.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244834400.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.078 kcal (2) G-P(sol) polarization free energy of solvation -63.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds