Wall clock time and date at job start Tue Mar 31 2020 11:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37744 * 120.00264 * 2 1 4 4 C 1.39450 * 120.00523 * 180.25038 * 3 2 1 5 5 C 1.48304 * 119.99472 * 179.74604 * 4 3 2 6 6 C 1.39389 * 120.12559 * 359.74722 * 5 4 3 7 7 C 1.38005 * 119.86821 * 179.74228 * 6 5 4 8 8 C 1.38333 * 120.12883 * 0.53696 * 7 6 5 9 9 C 1.38333 * 120.25137 * 359.71974 * 8 7 6 10 10 C 1.38000 * 120.12875 * 0.02562 * 9 8 7 11 11 C 1.39491 * 120.00817 * 359.76799 * 4 3 2 12 12 C 1.37704 * 120.00418 * 359.97438 * 11 4 3 13 13 C 1.39488 * 120.00346 * 179.74613 * 2 1 3 14 14 C 1.48215 * 120.00469 * 359.97438 * 13 2 1 15 15 C 1.39945 * 119.61224 * 130.52663 * 14 13 2 16 16 C 1.38687 * 119.46302 * 180.23304 * 15 14 13 17 17 C 1.38306 * 118.69119 * 359.50178 * 16 15 14 18 18 C 1.40694 * 119.19294 * 0.49395 * 17 16 15 19 19 C 1.41374 * 119.76281 * 179.72223 * 18 17 16 20 20 H 1.07999 * 119.99693 * 4.89414 * 19 18 17 21 21 C 1.40010 * 119.99896 * 184.88636 * 19 18 17 22 22 N 1.30748 * 120.00153 * 5.43446 * 21 19 18 23 23 Si 1.86798 * 119.99713 * 185.43821 * 21 19 18 24 24 H 1.48495 * 109.47540 * 59.99512 * 23 21 19 25 25 H 1.48507 * 109.46893 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46844 * 299.99452 * 23 21 19 27 27 N 1.32262 * 119.61163 * 310.50359 * 14 13 2 28 28 H 1.08997 * 109.47046 * 265.16559 * 1 2 3 29 29 H 1.08996 * 109.47384 * 25.17062 * 1 2 3 30 30 H 1.09001 * 109.46950 * 145.17112 * 1 2 3 31 31 H 1.08001 * 119.99769 * 0.02562 * 3 2 1 32 32 H 1.07994 * 120.06510 * 0.02562 * 6 5 4 33 33 H 1.07996 * 119.93820 * 180.27409 * 7 6 5 34 34 H 1.07998 * 119.87828 * 179.74335 * 8 7 6 35 35 H 1.08004 * 119.93621 * 180.02562 * 9 8 7 36 36 H 1.08006 * 120.06768 * 179.97438 * 10 9 8 37 37 H 1.08001 * 119.99451 * 179.97438 * 11 4 3 38 38 H 1.08000 * 120.00513 * 179.97438 * 12 11 4 39 39 H 1.08004 * 120.27116 * 359.95418 * 15 14 13 40 40 H 1.07995 * 120.65019 * 179.74627 * 16 15 14 41 41 H 1.07993 * 120.39911 * 180.21987 * 17 16 15 42 42 H 0.96996 * 120.00049 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1929 0.0000 4 6 3.5902 1.1929 -0.0053 5 6 4.3316 2.4774 -0.0110 6 6 3.6371 3.6859 -0.0164 7 6 4.3323 4.8781 -0.0163 8 6 5.7156 4.8752 -0.0220 9 6 6.4100 3.6788 -0.0221 10 6 5.7255 2.4806 -0.0169 11 6 4.2879 -0.0150 -0.0057 12 6 3.5998 -1.2077 -0.0003 13 6 2.2045 -1.2079 0.0054 14 6 1.4636 -2.4916 0.0116 15 6 1.8023 -3.4900 -0.9087 16 6 1.1038 -4.6881 -0.9033 17 6 0.0938 -4.8637 0.0252 18 6 -0.1999 -3.8226 0.9248 19 6 -1.2338 -3.9870 1.8749 20 1 -1.7417 -4.9361 1.9615 21 6 -1.5991 -2.9193 2.7037 22 7 -1.0596 -1.7412 2.5283 23 14 -2.8572 -3.1779 4.0601 24 1 -2.3620 -4.2117 5.0041 25 1 -3.0675 -1.9017 4.7900 26 1 -4.1418 -3.6257 3.4648 27 7 0.4904 -2.6802 0.8872 28 1 -0.3633 -0.0866 1.0240 29 1 -0.3634 0.9300 -0.4371 30 1 -0.3633 -0.8436 -0.5869 31 1 1.6558 2.1282 0.0004 32 1 2.5572 3.6894 -0.0160 33 1 3.7953 5.8151 -0.0160 34 1 6.2555 5.8105 -0.0261 35 1 7.4901 3.6825 -0.0262 36 1 6.2687 1.5471 -0.0174 37 1 5.3679 -0.0146 -0.0102 38 1 4.1399 -2.1429 -0.0010 39 1 2.5982 -3.3272 -1.6204 40 1 1.3464 -5.4700 -1.6076 41 1 -0.4654 -5.7870 0.0563 42 1 -1.3124 -1.0017 3.1027 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244835426.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:19 Heat of formation + Delta-G solvation = 74.162810 kcal Electronic energy + Delta-G solvation = -24365.543435 eV Core-core repulsion = 21046.460053 eV Total energy + Delta-G solvation = -3319.083381 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.74727 -38.66369 -37.51243 -33.81718 -33.11084 -31.90304 -30.88497 -30.62682 -30.20327 -28.10670 -26.51711 -25.38378 -23.65306 -22.79826 -21.52664 -21.43496 -20.52146 -19.57245 -17.53131 -17.26659 -15.93469 -15.55273 -15.27588 -14.89091 -14.58014 -14.26963 -13.97421 -13.92125 -13.61287 -13.47252 -13.28384 -12.81844 -12.68123 -12.45817 -12.22645 -12.05931 -11.46955 -11.37293 -11.28508 -11.19855 -11.14401 -11.09338 -10.79999 -10.74663 -10.42562 -10.31871 -9.95435 -9.47901 -9.30295 -8.97430 -8.30593 -8.20568 -7.90421 -7.63897 -7.21725 -6.48476 -4.55711 0.84885 1.38624 1.93080 2.04482 2.74348 2.97880 3.06199 3.08041 3.17762 3.80006 3.91323 4.39388 4.69974 4.76226 4.80772 4.92087 5.03750 5.33724 5.35645 5.43013 5.44590 5.45571 5.76741 5.79332 5.91474 5.98504 6.02553 6.08819 6.20670 6.38310 6.41508 6.44747 6.46275 6.49122 6.53457 6.67342 6.71841 6.75345 6.86494 6.99535 7.01385 7.03622 7.20621 7.29374 7.34357 7.53223 7.56387 7.68884 7.97364 8.17169 8.61962 8.86400 9.99330 10.25058 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.017045 B = 0.003380 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.292183 B = 8282.754148 C = 9451.896492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.041 4.041 3 C -0.117 4.117 4 C -0.064 4.064 5 C -0.026 4.026 6 C -0.116 4.116 7 C -0.118 4.118 8 C -0.132 4.132 9 C -0.119 4.119 10 C -0.118 4.118 11 C -0.122 4.122 12 C -0.104 4.104 13 C -0.004 4.004 14 C 0.175 3.825 15 C -0.299 4.299 16 C -0.060 4.060 17 C -0.273 4.273 18 C 0.256 3.744 19 C -0.432 4.432 20 H 0.083 0.917 21 C 0.074 3.926 22 N -0.715 5.715 23 Si 0.906 3.094 24 H -0.266 1.266 25 H -0.277 1.277 26 H -0.266 1.266 27 N -0.462 5.462 28 H 0.108 0.892 29 H 0.038 0.962 30 H 0.064 0.936 31 H 0.119 0.881 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.557 10.141 -3.405 13.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.042 4.042 3 C -0.135 4.135 4 C -0.064 4.064 5 C -0.026 4.026 6 C -0.134 4.134 7 C -0.136 4.136 8 C -0.150 4.150 9 C -0.137 4.137 10 C -0.135 4.135 11 C -0.140 4.140 12 C -0.123 4.123 13 C -0.005 4.005 14 C 0.030 3.970 15 C -0.322 4.322 16 C -0.084 4.084 17 C -0.296 4.296 18 C 0.131 3.869 19 C -0.463 4.463 20 H 0.101 0.899 21 C -0.152 4.152 22 N -0.337 5.337 23 Si 0.731 3.269 24 H -0.190 1.190 25 H -0.202 1.202 26 H -0.190 1.190 27 N -0.174 5.174 28 H 0.127 0.873 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.137 0.863 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.281 10.989 -2.704 14.023 hybrid contribution -0.229 -0.890 -0.036 0.919 sum 8.052 10.099 -2.740 13.203 Atomic orbital electron populations 1.20848 0.89937 0.99890 1.05561 1.19988 0.96995 0.91342 0.95830 1.20948 0.92770 0.97518 1.02236 1.18647 0.92955 0.91555 1.03282 1.18914 0.92950 0.92467 0.98236 1.21305 1.00194 0.91717 1.00210 1.21067 0.94364 0.97826 1.00350 1.21141 0.94412 0.97902 1.01506 1.21055 0.99696 0.92457 1.00474 1.21276 0.93507 0.98276 1.00483 1.20920 0.99061 0.91551 1.02448 1.21066 0.93319 0.97675 1.00231 1.18780 0.92146 0.92217 0.97374 1.19695 0.93331 0.91071 0.92906 1.21179 1.07400 0.96742 1.06876 1.20786 0.95092 0.95747 0.96747 1.21797 1.03985 1.01423 1.02402 1.18534 0.91125 0.86667 0.90605 1.19531 1.14252 0.98253 1.14253 0.89924 1.26000 0.96487 0.94760 0.97919 1.69992 1.31925 1.00278 1.31457 0.86406 0.81007 0.78673 0.80838 1.19022 1.20220 1.19039 1.68893 1.05481 1.22129 1.20912 0.87333 0.94348 0.91720 0.86299 0.85657 0.86154 0.86407 0.86195 0.85738 0.86372 0.86038 0.88698 0.88514 0.88328 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.15 8.75 36.00 0.32 -1.84 16 2 C -0.04 -0.81 5.90 -104.34 -0.62 -1.43 16 3 C -0.12 -2.00 9.04 -39.31 -0.36 -2.35 16 4 C -0.06 -1.03 5.88 -104.84 -0.62 -1.65 16 5 C -0.03 -0.36 5.88 -104.90 -0.62 -0.98 16 6 C -0.12 -1.47 9.43 -39.24 -0.37 -1.84 16 7 C -0.12 -1.27 10.03 -39.63 -0.40 -1.67 16 8 C -0.13 -1.34 10.04 -39.51 -0.40 -1.73 16 9 C -0.12 -1.25 10.03 -39.63 -0.40 -1.65 16 10 C -0.12 -1.44 9.43 -39.24 -0.37 -1.81 16 11 C -0.12 -1.94 9.41 -39.31 -0.37 -2.31 16 12 C -0.10 -1.89 9.45 -39.30 -0.37 -2.26 16 13 C 0.00 -0.09 5.60 -104.85 -0.59 -0.68 16 14 C 0.17 4.17 5.39 -82.94 -0.45 3.72 16 15 C -0.30 -6.69 9.52 -38.78 -0.37 -7.06 16 16 C -0.06 -1.32 10.15 -39.39 -0.40 -1.72 16 17 C -0.27 -6.59 9.83 -38.63 -0.38 -6.97 16 18 C 0.26 6.78 6.54 -85.01 -0.56 6.23 16 19 C -0.43 -11.15 9.13 -37.73 -0.34 -11.49 16 20 H 0.08 2.01 7.85 -52.49 -0.41 1.60 16 21 C 0.07 1.79 5.48 -17.35 -0.10 1.70 16 22 N -0.72 -17.80 9.82 55.55 0.55 -17.25 16 23 Si 0.91 18.09 29.56 -169.99 -5.03 13.06 16 24 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 25 H -0.28 -5.42 7.11 56.52 0.40 -5.01 16 26 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 27 N -0.46 -12.10 6.40 -7.68 -0.05 -12.15 16 28 H 0.11 2.41 6.37 -51.93 -0.33 2.08 16 29 H 0.04 0.65 8.05 -51.93 -0.42 0.23 16 30 H 0.06 1.46 7.00 -51.93 -0.36 1.10 16 31 H 0.12 1.76 6.19 -52.49 -0.32 1.43 16 32 H 0.13 1.46 6.19 -52.49 -0.33 1.14 16 33 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 34 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 36 H 0.12 1.35 6.20 -52.48 -0.33 1.03 16 37 H 0.12 1.54 6.19 -52.49 -0.32 1.21 16 38 H 0.12 2.06 8.01 -52.49 -0.42 1.64 16 39 H 0.09 1.91 8.02 -52.48 -0.42 1.49 16 40 H 0.10 1.83 8.06 -52.49 -0.42 1.40 16 41 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 42 H 0.27 6.25 8.29 -40.82 -0.34 5.91 16 LS Contribution 350.67 15.07 5.28 5.28 Total: -1.00 -28.06 350.67 -11.90 -39.96 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -4.91 Total: 8.88 kcal Atomic # 6 Polarization: -30.06 SS G_CDS: -7.74 Total: -37.80 kcal Atomic # 7 Polarization: -29.90 SS G_CDS: 0.50 Total: -29.40 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.06 -11.90 -39.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244835426.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.124 kcal (2) G-P(sol) polarization free energy of solvation -28.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds