Wall clock time and date at job start Tue Mar 31 2020 11:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37777 * 119.99753 * 2 1 4 4 C 1.39431 * 119.99608 * 179.97438 * 3 2 1 5 5 C 1.48318 * 119.99699 * 180.02562 * 4 3 2 6 6 C 1.39375 * 120.12477 * 359.70633 * 5 4 3 7 7 C 1.38014 * 119.87115 * 179.76531 * 6 5 4 8 8 C 1.38329 * 120.11962 * 0.52880 * 7 6 5 9 9 C 1.38321 * 120.25695 * 359.70312 * 8 7 6 10 10 C 1.38003 * 120.12745 * 0.03659 * 9 8 7 11 11 C 1.39459 * 120.00107 * 0.02562 * 4 3 2 12 12 C 1.37743 * 120.00001 * 0.02562 * 11 4 3 13 13 C 1.39421 * 120.00171 * 180.28245 * 2 1 3 14 14 C 1.48340 * 120.00032 * 0.02562 * 13 2 1 15 15 C 1.39742 * 120.41809 * 236.43702 * 14 13 2 16 16 N 1.31906 * 121.14605 * 180.02562 * 15 14 13 17 17 C 1.31524 * 122.12173 * 359.97438 * 16 15 14 18 18 C 1.40778 * 120.68074 * 359.97438 * 17 16 15 19 19 C 1.41428 * 120.60501 * 180.02562 * 18 17 16 20 20 H 1.08004 * 120.00056 * 154.64610 * 19 18 17 21 21 C 1.39936 * 120.00276 * 334.65108 * 19 18 17 22 22 N 1.30830 * 119.99818 * 160.64378 * 21 19 18 23 23 Si 1.86797 * 119.99795 * 340.64528 * 21 19 18 24 24 H 1.48502 * 109.47008 * 95.29099 * 23 21 19 25 25 H 1.48502 * 109.47028 * 215.28376 * 23 21 19 26 26 H 1.48494 * 109.47297 * 335.28504 * 23 21 19 27 27 C 1.39187 * 120.40936 * 56.15937 * 14 13 2 28 28 H 1.09006 * 109.47028 * 95.36110 * 1 2 3 29 29 H 1.09000 * 109.47049 * 215.35779 * 1 2 3 30 30 H 1.08992 * 109.47118 * 335.35836 * 1 2 3 31 31 H 1.07997 * 120.00050 * 0.02818 * 3 2 1 32 32 H 1.07996 * 120.06697 * 0.02562 * 6 5 4 33 33 H 1.07996 * 119.93603 * 180.25312 * 7 6 5 34 34 H 1.08007 * 119.86922 * 179.71971 * 8 7 6 35 35 H 1.08005 * 119.93800 * 180.02562 * 9 8 7 36 36 H 1.08005 * 120.06976 * 179.97438 * 10 9 8 37 37 H 1.07997 * 120.00578 * 179.97438 * 11 4 3 38 38 H 1.08000 * 120.00273 * 179.97438 * 12 11 4 39 39 H 1.07995 * 119.42775 * 359.97438 * 15 14 13 40 40 H 1.08000 * 119.65962 * 179.97438 * 17 16 15 41 41 H 0.97007 * 119.99751 * 180.02562 * 22 21 19 42 42 H 1.08003 * 120.95529 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1932 0.0000 4 6 3.5902 1.1932 0.0005 5 6 4.3317 2.4777 0.0011 6 6 3.6375 3.6862 -0.0051 7 6 4.3328 4.8784 0.0004 8 6 5.7160 4.8752 0.0010 9 6 6.4103 3.6789 0.0022 10 6 5.7256 2.4807 0.0022 11 6 4.2875 -0.0146 0.0005 12 6 3.5987 -1.2075 -0.0005 13 6 2.2042 -1.2074 -0.0060 14 6 1.4625 -2.4921 -0.0129 15 6 1.6854 -3.4431 0.9865 16 7 1.0343 -4.5902 0.9940 17 6 0.1490 -4.8979 0.0713 18 6 -0.1411 -4.0003 -0.9737 19 6 -1.0938 -4.3326 -1.9647 20 1 -1.6121 -3.5504 -2.4993 21 6 -1.3649 -5.6750 -2.2525 22 7 -2.4742 -6.0016 -2.8646 23 14 -0.1432 -7.0004 -1.7627 24 1 -0.5369 -7.5765 -0.4518 25 1 -0.1356 -8.0712 -2.7916 26 1 1.2139 -6.4074 -1.6553 27 6 0.5317 -2.7628 -1.0117 28 1 -0.3633 -0.0960 -1.0232 29 1 -0.3633 -0.8381 0.5947 30 1 -0.3633 0.9340 0.4284 31 1 1.6558 2.1285 0.0005 32 1 2.5575 3.6898 -0.0099 33 1 3.7958 5.8154 -0.0002 34 1 6.2561 5.8106 0.0007 35 1 7.4903 3.6824 0.0031 36 1 6.2686 1.5471 0.0028 37 1 5.3674 -0.0147 0.0005 38 1 4.1387 -2.1428 -0.0009 39 1 2.4037 -3.2355 1.7657 40 1 -0.3608 -5.8490 0.1159 41 1 -2.6623 -6.9321 -3.0637 42 1 0.3339 -2.0468 -1.7956 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244835553.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:50 Heat of formation + Delta-G solvation = 62.651078 kcal Electronic energy + Delta-G solvation = -23929.701882 eV Core-core repulsion = 20610.119315 eV Total energy + Delta-G solvation = -3319.582567 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.02605 -38.98921 -37.92226 -34.13171 -33.65921 -32.26177 -31.32832 -31.05106 -30.70985 -28.09587 -26.74281 -25.55305 -23.86552 -23.01332 -21.96408 -21.54686 -20.76962 -19.96917 -17.81207 -17.36668 -16.33168 -15.77907 -15.59922 -15.46698 -15.03174 -14.64866 -14.28812 -14.13523 -13.77200 -13.57456 -13.45984 -13.08286 -13.00198 -12.81394 -12.61892 -12.29419 -12.03702 -11.88963 -11.72299 -11.58714 -11.39477 -11.16113 -11.06835 -10.92410 -10.64308 -10.53014 -10.00469 -9.65772 -9.42858 -9.12308 -8.60987 -8.57120 -8.22303 -8.06891 -7.49313 -7.15607 -4.68659 0.63921 1.23637 1.59159 1.79217 2.41303 2.53317 3.03699 3.13099 3.22397 3.59400 3.83188 4.10995 4.40016 4.54860 4.63045 4.77723 4.86784 5.08570 5.09553 5.17234 5.26152 5.27561 5.34779 5.43810 5.62262 5.73603 5.75529 5.82615 5.90321 5.94937 6.05924 6.12557 6.20234 6.23940 6.25957 6.30227 6.33297 6.44878 6.51568 6.60440 6.75547 6.79200 6.82620 6.90016 7.06402 7.15533 7.33422 7.39631 7.79726 8.07567 8.33610 8.52389 9.33959 9.84883 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.028683 B = 0.002702 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.961424 B =10360.453498 C =10751.309431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.071 4.071 3 C -0.108 4.108 4 C -0.063 4.063 5 C -0.031 4.031 6 C -0.116 4.116 7 C -0.118 4.118 8 C -0.128 4.128 9 C -0.118 4.118 10 C -0.116 4.116 11 C -0.114 4.114 12 C -0.105 4.105 13 C -0.013 4.013 14 C -0.069 4.069 15 C -0.028 4.028 16 N -0.454 5.454 17 C -0.032 4.032 18 C 0.043 3.957 19 C -0.428 4.428 20 H 0.094 0.906 21 C 0.083 3.917 22 N -0.792 5.792 23 Si 0.911 3.089 24 H -0.264 1.264 25 H -0.287 1.287 26 H -0.246 1.246 27 C -0.160 4.160 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.290 0.710 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.773 15.911 3.467 20.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.071 4.071 3 C -0.126 4.126 4 C -0.063 4.063 5 C -0.031 4.031 6 C -0.133 4.133 7 C -0.136 4.136 8 C -0.146 4.146 9 C -0.136 4.136 10 C -0.134 4.134 11 C -0.131 4.131 12 C -0.123 4.123 13 C -0.014 4.014 14 C -0.071 4.071 15 C -0.185 4.185 16 N -0.160 5.160 17 C -0.194 4.194 18 C 0.038 3.962 19 C -0.457 4.457 20 H 0.112 0.888 21 C -0.138 4.138 22 N -0.415 5.415 23 Si 0.737 3.263 24 H -0.190 1.190 25 H -0.214 1.214 26 H -0.169 1.169 27 C -0.186 4.186 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.100 0.900 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.724 15.167 3.982 19.579 hybrid contribution 0.226 -0.050 -0.635 0.676 sum 11.949 15.118 3.347 19.558 Atomic orbital electron populations 1.20841 0.90767 1.02427 1.02944 1.19915 0.96330 0.91836 0.99053 1.20955 0.92916 0.97416 1.01325 1.18671 0.92912 0.91745 1.02944 1.18874 0.93000 0.92334 0.98883 1.21284 1.00112 0.91725 1.00223 1.21083 0.94390 0.97863 1.00243 1.21173 0.94425 0.97997 1.01039 1.21076 0.99828 0.92419 1.00282 1.21278 0.93448 0.98358 1.00275 1.21042 0.99413 0.91539 1.01146 1.21158 0.93346 0.97883 0.99947 1.18936 0.92698 0.92385 0.97337 1.19338 0.97557 0.92949 0.97285 1.21791 1.04956 0.91262 1.00473 1.66923 1.05492 1.18351 1.25281 1.22501 1.01868 1.01049 0.93968 1.18543 0.91830 0.92487 0.93291 1.19469 1.16402 0.93460 1.16328 0.88772 1.26210 0.94955 1.00240 0.92390 1.69681 1.20916 1.21295 1.29567 0.86349 0.82925 0.79052 0.77939 1.18990 1.21414 1.16936 1.21336 0.98664 0.99049 0.99520 0.90842 0.90627 0.92315 0.86019 0.85698 0.86042 0.86267 0.86057 0.85691 0.86067 0.85672 0.85754 0.85392 0.89964 0.87100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.69 8.58 36.01 0.31 -1.38 16 2 C -0.07 -1.12 5.88 -104.35 -0.61 -1.74 16 3 C -0.11 -1.49 9.04 -39.31 -0.36 -1.85 16 4 C -0.06 -0.84 5.88 -104.85 -0.62 -1.46 16 5 C -0.03 -0.37 5.88 -104.90 -0.62 -0.99 16 6 C -0.12 -1.23 9.43 -39.24 -0.37 -1.60 16 7 C -0.12 -1.08 10.03 -39.63 -0.40 -1.48 16 8 C -0.13 -1.12 10.04 -39.52 -0.40 -1.52 16 9 C -0.12 -1.08 10.03 -39.64 -0.40 -1.47 16 10 C -0.12 -1.22 9.43 -39.24 -0.37 -1.59 16 11 C -0.11 -1.53 9.41 -39.31 -0.37 -1.90 16 12 C -0.11 -1.63 9.61 -39.31 -0.38 -2.00 16 13 C -0.01 -0.22 5.43 -104.84 -0.57 -0.79 16 14 C -0.07 -1.42 4.50 -104.83 -0.47 -1.89 16 15 C -0.03 -0.60 10.78 -16.96 -0.18 -0.78 16 16 N -0.45 -10.89 10.32 -12.28 -0.13 -11.02 16 17 C -0.03 -0.80 8.37 -16.72 -0.14 -0.94 16 18 C 0.04 1.07 5.21 -106.71 -0.56 0.51 16 19 C -0.43 -11.00 9.61 -37.73 -0.36 -11.37 16 20 H 0.09 2.49 8.06 -52.48 -0.42 2.07 16 21 C 0.08 2.09 5.42 -17.34 -0.09 1.99 16 22 N -0.79 -20.02 13.93 55.55 0.77 -19.24 16 23 Si 0.91 20.26 24.44 -169.99 -4.15 16.11 16 24 H -0.26 -5.75 6.66 56.52 0.38 -5.38 16 25 H -0.29 -6.09 7.11 56.52 0.40 -5.68 16 26 H -0.25 -5.75 6.79 56.52 0.38 -5.36 16 27 C -0.16 -3.56 8.18 -38.22 -0.31 -3.87 16 28 H 0.07 1.10 7.57 -51.93 -0.39 0.70 16 29 H 0.07 1.28 7.03 -51.93 -0.36 0.91 16 30 H 0.06 0.72 8.05 -51.93 -0.42 0.30 16 31 H 0.12 1.40 6.19 -52.49 -0.32 1.07 16 32 H 0.13 1.17 6.20 -52.49 -0.33 0.85 16 33 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 35 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 36 H 0.13 1.15 6.20 -52.48 -0.33 0.82 16 37 H 0.12 1.32 6.19 -52.49 -0.32 1.00 16 38 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 40 H 0.13 3.14 4.21 -52.49 -0.22 2.92 16 41 H 0.29 6.60 8.30 -40.82 -0.34 6.26 16 42 H 0.11 2.34 7.36 -52.48 -0.39 1.95 16 LS Contribution 345.60 15.07 5.21 5.21 Total: -1.00 -27.71 345.60 -10.36 -38.07 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -4.80 Total: 6.99 kcal Atomic # 6 Polarization: -28.85 SS G_CDS: -7.26 Total: -36.11 kcal Atomic # 7 Polarization: -30.91 SS G_CDS: 0.65 Total: -30.26 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.15 Total: 16.11 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.71 -10.36 -38.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244835553.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.722 kcal (2) G-P(sol) polarization free energy of solvation -27.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds