Wall clock time and date at job start Tue Mar 31 2020 11:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37777 * 119.99753 * 2 1 4 4 C 1.39431 * 119.99608 * 179.97438 * 3 2 1 5 5 C 1.48318 * 119.99699 * 180.02562 * 4 3 2 6 6 C 1.39375 * 120.12477 * 359.70633 * 5 4 3 7 7 C 1.38014 * 119.87115 * 179.76531 * 6 5 4 8 8 C 1.38329 * 120.11962 * 0.52880 * 7 6 5 9 9 C 1.38321 * 120.25695 * 359.70312 * 8 7 6 10 10 C 1.38003 * 120.12745 * 0.03659 * 9 8 7 11 11 C 1.39459 * 120.00107 * 0.02562 * 4 3 2 12 12 C 1.37743 * 120.00001 * 0.02562 * 11 4 3 13 13 C 1.39421 * 120.00171 * 180.28245 * 2 1 3 14 14 C 1.48340 * 120.00032 * 0.02562 * 13 2 1 15 15 C 1.39742 * 120.41809 * 236.43702 * 14 13 2 16 16 N 1.31906 * 121.14605 * 180.02562 * 15 14 13 17 17 C 1.31524 * 122.12173 * 359.97438 * 16 15 14 18 18 C 1.40778 * 120.68074 * 359.97438 * 17 16 15 19 19 C 1.41428 * 120.60501 * 180.02562 * 18 17 16 20 20 H 1.08004 * 120.00056 * 154.64610 * 19 18 17 21 21 C 1.39936 * 120.00276 * 334.65108 * 19 18 17 22 22 N 1.30830 * 119.99818 * 160.64378 * 21 19 18 23 23 Si 1.86797 * 119.99795 * 340.64528 * 21 19 18 24 24 H 1.48502 * 109.47008 * 95.29099 * 23 21 19 25 25 H 1.48502 * 109.47028 * 215.28376 * 23 21 19 26 26 H 1.48494 * 109.47297 * 335.28504 * 23 21 19 27 27 C 1.39187 * 120.40936 * 56.15937 * 14 13 2 28 28 H 1.09006 * 109.47028 * 95.36110 * 1 2 3 29 29 H 1.09000 * 109.47049 * 215.35779 * 1 2 3 30 30 H 1.08992 * 109.47118 * 335.35836 * 1 2 3 31 31 H 1.07997 * 120.00050 * 0.02818 * 3 2 1 32 32 H 1.07996 * 120.06697 * 0.02562 * 6 5 4 33 33 H 1.07996 * 119.93603 * 180.25312 * 7 6 5 34 34 H 1.08007 * 119.86922 * 179.71971 * 8 7 6 35 35 H 1.08005 * 119.93800 * 180.02562 * 9 8 7 36 36 H 1.08005 * 120.06976 * 179.97438 * 10 9 8 37 37 H 1.07997 * 120.00578 * 179.97438 * 11 4 3 38 38 H 1.08000 * 120.00273 * 179.97438 * 12 11 4 39 39 H 1.07995 * 119.42775 * 359.97438 * 15 14 13 40 40 H 1.08000 * 119.65962 * 179.97438 * 17 16 15 41 41 H 0.97007 * 119.99751 * 180.02562 * 22 21 19 42 42 H 1.08003 * 120.95529 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1932 0.0000 4 6 3.5902 1.1932 0.0005 5 6 4.3317 2.4777 0.0011 6 6 3.6375 3.6862 -0.0051 7 6 4.3328 4.8784 0.0004 8 6 5.7160 4.8752 0.0010 9 6 6.4103 3.6789 0.0022 10 6 5.7256 2.4807 0.0022 11 6 4.2875 -0.0146 0.0005 12 6 3.5987 -1.2075 -0.0005 13 6 2.2042 -1.2074 -0.0060 14 6 1.4625 -2.4921 -0.0129 15 6 1.6854 -3.4431 0.9865 16 7 1.0343 -4.5902 0.9940 17 6 0.1490 -4.8979 0.0713 18 6 -0.1411 -4.0003 -0.9737 19 6 -1.0938 -4.3326 -1.9647 20 1 -1.6121 -3.5504 -2.4993 21 6 -1.3649 -5.6750 -2.2525 22 7 -2.4742 -6.0016 -2.8646 23 14 -0.1432 -7.0004 -1.7627 24 1 -0.5369 -7.5765 -0.4518 25 1 -0.1356 -8.0712 -2.7916 26 1 1.2139 -6.4074 -1.6553 27 6 0.5317 -2.7628 -1.0117 28 1 -0.3633 -0.0960 -1.0232 29 1 -0.3633 -0.8381 0.5947 30 1 -0.3633 0.9340 0.4284 31 1 1.6558 2.1285 0.0005 32 1 2.5575 3.6898 -0.0099 33 1 3.7958 5.8154 -0.0002 34 1 6.2561 5.8106 0.0007 35 1 7.4903 3.6824 0.0031 36 1 6.2686 1.5471 0.0028 37 1 5.3674 -0.0147 0.0005 38 1 4.1387 -2.1428 -0.0009 39 1 2.4037 -3.2355 1.7657 40 1 -0.3608 -5.8490 0.1159 41 1 -2.6623 -6.9321 -3.0637 42 1 0.3339 -2.0468 -1.7956 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244835553.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:49 Heat of formation + Delta-G solvation = 50.961261 kcal Electronic energy + Delta-G solvation = -23930.208791 eV Core-core repulsion = 20610.119315 eV Total energy + Delta-G solvation = -3320.089476 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.18487 -40.31022 -39.13703 -35.93003 -34.91452 -33.43841 -33.10415 -32.03581 -31.78345 -29.25458 -27.97400 -27.38805 -25.06645 -23.93005 -23.47312 -22.92496 -22.00918 -21.10395 -19.50237 -18.31936 -18.08876 -17.12875 -16.68913 -16.61686 -16.53026 -16.26455 -15.24214 -15.06987 -14.98593 -14.73665 -14.61833 -14.53348 -14.38964 -14.01545 -13.90959 -13.75735 -13.55495 -13.22616 -13.03331 -12.92257 -12.78250 -12.72067 -12.30295 -12.24753 -11.87893 -11.80163 -11.55967 -11.30133 -10.74697 -10.24652 -10.04815 -9.82824 -9.69860 -9.65516 -9.04593 -8.73908 -6.63943 -0.35846 0.44678 0.47923 0.53345 0.67577 1.07396 1.22949 1.35047 1.41501 2.02493 2.49830 2.68708 3.14998 3.41965 3.59975 3.73713 3.80174 3.94233 3.99838 4.15120 4.19098 4.26535 4.37150 4.40180 4.40500 4.41800 4.56270 4.65716 4.70925 4.77863 4.83390 4.84442 4.92799 4.98275 5.11122 5.17915 5.21915 5.28816 5.35322 5.42031 5.51625 5.53827 5.62458 5.64208 5.75202 5.81810 5.94487 6.04877 6.10243 6.13347 6.45761 6.60838 7.48791 8.01872 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.028683 B = 0.002702 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.961424 B =10360.453498 C =10751.309431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.077 4.077 3 C -0.112 4.112 4 C -0.052 4.052 5 C -0.060 4.060 6 C -0.125 4.125 7 C -0.125 4.125 8 C -0.125 4.125 9 C -0.124 4.124 10 C -0.123 4.123 11 C -0.115 4.115 12 C -0.107 4.107 13 C -0.050 4.050 14 C -0.052 4.052 15 C -0.023 4.023 16 N -0.469 5.469 17 C -0.053 4.053 18 C 0.032 3.968 19 C -0.459 4.459 20 H 0.071 0.929 21 C 0.056 3.944 22 N -0.824 5.824 23 Si 0.959 3.041 24 H -0.258 1.258 25 H -0.267 1.267 26 H -0.265 1.265 27 C -0.163 4.163 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.086 0.914 31 H 0.145 0.855 32 H 0.132 0.868 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.135 0.865 37 H 0.148 0.852 38 H 0.130 0.870 39 H 0.152 0.848 40 H 0.126 0.874 41 H 0.300 0.700 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.570 18.516 4.291 23.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.077 4.077 3 C -0.129 4.129 4 C -0.052 4.052 5 C -0.060 4.060 6 C -0.143 4.143 7 C -0.142 4.142 8 C -0.143 4.143 9 C -0.142 4.142 10 C -0.141 4.141 11 C -0.132 4.132 12 C -0.125 4.125 13 C -0.051 4.051 14 C -0.054 4.054 15 C -0.181 4.181 16 N -0.176 5.176 17 C -0.213 4.213 18 C 0.027 3.973 19 C -0.488 4.488 20 H 0.089 0.911 21 C -0.162 4.162 22 N -0.448 5.448 23 Si 0.784 3.216 24 H -0.184 1.184 25 H -0.193 1.193 26 H -0.190 1.190 27 C -0.189 4.189 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.163 0.837 32 H 0.150 0.850 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.153 0.847 37 H 0.166 0.834 38 H 0.147 0.853 39 H 0.169 0.831 40 H 0.143 0.857 41 H 0.111 0.889 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 14.498 17.756 4.796 23.419 hybrid contribution -0.418 -0.485 -0.790 1.016 sum 14.080 17.271 4.006 22.640 Atomic orbital electron populations 1.20805 0.90768 1.02799 1.02343 1.19997 0.96475 0.92060 0.99144 1.21178 0.93379 0.97506 1.00876 1.18975 0.92970 0.92705 1.00504 1.18921 0.93717 0.91897 1.01455 1.21497 1.00752 0.91943 1.00060 1.21408 0.94930 0.98282 0.99626 1.21586 0.94513 0.99058 0.99163 1.21413 1.01173 0.92045 0.99583 1.21504 0.93085 0.99563 0.99965 1.21304 1.00779 0.90761 1.00387 1.21239 0.92507 0.99014 0.99698 1.18838 0.93547 0.91304 1.01373 1.19543 0.96212 0.94067 0.95535 1.22358 1.04243 0.90598 1.00872 1.66941 1.05847 1.19589 1.25226 1.22468 1.02872 1.01332 0.94595 1.18663 0.91992 0.93544 0.93095 1.19430 1.18010 0.93618 1.17732 0.91129 1.26711 0.95944 1.01288 0.92284 1.69681 1.21824 1.22392 1.30878 0.85612 0.80055 0.77550 0.78409 1.18384 1.19312 1.18964 1.21503 0.98910 0.98314 1.00205 0.91384 0.93224 0.89512 0.83737 0.84979 0.83847 0.83713 0.83748 0.84729 0.83413 0.85256 0.83115 0.85723 0.88892 0.86618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.28 8.58 71.24 0.61 -2.67 16 2 C -0.08 -2.34 5.88 -19.69 -0.12 -2.45 16 3 C -0.11 -2.85 9.04 22.45 0.20 -2.65 16 4 C -0.05 -1.26 5.88 -20.01 -0.12 -1.38 16 5 C -0.06 -1.27 5.88 -20.04 -0.12 -1.38 16 6 C -0.12 -2.30 9.43 22.49 0.21 -2.09 16 7 C -0.12 -1.85 10.03 22.24 0.22 -1.63 16 8 C -0.13 -1.69 10.04 22.31 0.22 -1.47 16 9 C -0.12 -1.81 10.03 22.23 0.22 -1.58 16 10 C -0.12 -2.22 9.43 22.49 0.21 -2.01 16 11 C -0.11 -2.82 9.41 22.45 0.21 -2.61 16 12 C -0.11 -3.13 9.61 22.45 0.22 -2.91 16 13 C -0.05 -1.70 5.43 -20.01 -0.11 -1.81 16 14 C -0.05 -2.12 4.50 -20.00 -0.09 -2.21 16 15 C -0.02 -0.96 10.78 85.05 0.92 -0.04 16 16 N -0.47 -22.59 10.32 -192.75 -1.99 -24.58 16 17 C -0.05 -2.69 8.37 85.36 0.71 -1.97 16 18 C 0.03 1.62 5.21 -21.22 -0.11 1.51 16 19 C -0.46 -24.84 9.61 23.47 0.23 -24.61 16 20 H 0.07 4.01 8.06 -2.91 -0.02 3.99 16 21 C 0.06 2.90 5.42 85.25 0.46 3.36 16 22 N -0.82 -42.94 13.93 21.82 0.30 -42.64 16 23 Si 0.96 42.64 24.44 68.60 1.68 44.31 16 24 H -0.26 -11.11 6.66 99.48 0.66 -10.45 16 25 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 26 H -0.27 -12.51 6.79 99.48 0.68 -11.83 16 27 C -0.16 -7.47 8.18 23.15 0.19 -7.28 16 28 H 0.07 2.06 7.57 -2.38 -0.02 2.04 16 29 H 0.05 1.71 7.03 -2.39 -0.02 1.69 16 30 H 0.09 2.01 8.05 -2.39 -0.02 1.99 16 31 H 0.15 2.93 6.19 -2.91 -0.02 2.91 16 32 H 0.13 2.11 6.20 -2.91 -0.02 2.09 16 33 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16 34 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 35 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 36 H 0.13 2.03 6.20 -2.91 -0.02 2.01 16 37 H 0.15 2.76 6.19 -2.91 -0.02 2.74 16 38 H 0.13 3.59 8.06 -2.91 -0.02 3.56 16 39 H 0.15 5.56 8.06 -2.91 -0.02 5.54 16 40 H 0.13 6.28 4.21 -2.91 -0.01 6.27 16 41 H 0.30 13.95 8.30 -92.70 -0.77 13.18 16 42 H 0.12 5.07 7.36 -2.91 -0.02 5.05 16 Total: -1.00 -61.39 345.60 5.15 -56.24 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 0.98 Total: 24.55 kcal Atomic # 6 Polarization: -62.06 SS G_CDS: 4.18 Total: -57.88 kcal Atomic # 7 Polarization: -65.53 SS G_CDS: -1.69 Total: -67.22 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.68 Total: 44.31 kcal Total: -61.39 5.15 -56.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244835553.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.197 kcal (2) G-P(sol) polarization free energy of solvation -61.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds