Wall clock time and date at job start Tue Mar 31 2020 11:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37764 * 120.00689 * 2 1 4 4 C 1.39434 * 120.00515 * 180.25373 * 3 2 1 5 5 C 1.48306 * 120.00173 * 179.76582 * 4 3 2 6 6 C 1.39386 * 120.12303 * 359.70460 * 5 4 3 7 7 C 1.38012 * 119.87027 * 179.76818 * 6 5 4 8 8 C 1.38324 * 120.12467 * 0.53223 * 7 6 5 9 9 C 1.38334 * 120.25395 * 359.69699 * 8 7 6 10 10 C 1.38003 * 120.12421 * 0.04300 * 9 8 7 11 11 C 1.39473 * 119.99685 * 359.74412 * 4 3 2 12 12 C 1.37729 * 120.00157 * 0.02562 * 11 4 3 13 13 C 1.39443 * 119.99868 * 179.74493 * 2 1 3 14 14 C 1.48306 * 119.99874 * 0.02562 * 13 2 1 15 15 C 1.40078 * 120.82918 * 309.72380 * 14 13 2 16 16 C 1.38489 * 119.42067 * 180.02562 * 15 14 13 17 17 N 1.31482 * 121.15274 * 359.97438 * 16 15 14 18 18 C 1.33657 * 121.80296 * 359.97438 * 17 16 15 19 19 C 1.41426 * 119.77706 * 179.97438 * 18 17 16 20 20 H 1.07997 * 119.99862 * 187.07595 * 19 18 17 21 21 C 1.40033 * 119.99947 * 7.07127 * 19 18 17 22 22 N 1.30741 * 120.00184 * 182.56406 * 21 19 18 23 23 Si 1.86809 * 120.00169 * 2.56807 * 21 19 18 24 24 H 1.48499 * 109.47093 * 179.97438 * 23 21 19 25 25 H 1.48503 * 109.46853 * 300.00053 * 23 21 19 26 26 H 1.48498 * 109.46880 * 59.99554 * 23 21 19 27 27 C 1.39358 * 120.82413 * 129.99991 * 14 13 2 28 28 H 1.09002 * 109.46693 * 270.25509 * 1 2 3 29 29 H 1.08999 * 109.47004 * 30.25339 * 1 2 3 30 30 H 1.09001 * 109.47454 * 150.25805 * 1 2 3 31 31 H 1.08001 * 119.99269 * 0.02562 * 3 2 1 32 32 H 1.08003 * 120.06636 * 0.02562 * 6 5 4 33 33 H 1.08001 * 119.93175 * 180.24911 * 7 6 5 34 34 H 1.07997 * 119.87168 * 179.72330 * 8 7 6 35 35 H 1.07992 * 119.93527 * 180.02562 * 9 8 7 36 36 H 1.07998 * 120.06351 * 179.97438 * 10 9 8 37 37 H 1.08002 * 119.99810 * 179.97438 * 11 4 3 38 38 H 1.08003 * 119.99613 * 179.97438 * 12 11 4 39 39 H 1.08000 * 120.28846 * 0.04197 * 15 14 13 40 40 H 1.08000 * 119.42415 * 179.97438 * 16 15 14 41 41 H 0.96999 * 119.99740 * 354.85375 * 22 21 19 42 42 H 1.08005 * 120.58835 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1930 0.0000 4 6 3.5903 1.1930 -0.0053 5 6 4.3319 2.4773 -0.0106 6 6 3.6376 3.6859 -0.0164 7 6 4.3330 4.8781 -0.0164 8 6 5.7162 4.8749 -0.0218 9 6 6.4105 3.6784 -0.0209 10 6 5.7257 2.4803 -0.0155 11 6 4.2876 -0.0150 -0.0053 12 6 3.5989 -1.2077 -0.0005 13 6 2.2042 -1.2076 0.0054 14 6 1.4626 -2.4919 0.0105 15 6 0.4376 -2.7253 0.9363 16 6 -0.2355 -3.9355 0.9153 17 7 0.0704 -4.8689 0.0413 18 6 1.0389 -4.6964 -0.8635 19 6 1.3328 -5.7296 -1.7834 20 1 2.1863 -5.6420 -2.4393 21 6 0.5171 -6.8663 -1.8437 22 7 0.8171 -7.8437 -2.6586 23 14 -0.9998 -6.9861 -0.7600 24 1 -1.6873 -8.2780 -1.0119 25 1 -0.5958 -6.9096 0.6670 26 1 -1.9221 -5.8654 -1.0740 27 6 1.7720 -3.4989 -0.9019 28 1 -0.3633 0.0046 1.0277 29 1 -0.3633 0.8877 -0.5178 30 1 -0.3634 -0.8923 -0.5098 31 1 1.6559 2.1283 0.0004 32 1 2.5576 3.6895 -0.0167 33 1 3.7960 5.8151 -0.0169 34 1 6.2562 5.8102 -0.0263 35 1 7.4904 3.6820 -0.0247 36 1 6.2687 1.5468 -0.0152 37 1 5.3676 -0.0150 -0.0099 38 1 4.1389 -2.1430 -0.0009 39 1 0.1743 -1.9680 1.6599 40 1 -1.0256 -4.1156 1.6293 41 1 1.5608 -7.7508 -3.2744 42 1 2.5584 -3.3590 -1.6289 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244835867.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:15 Heat of formation + Delta-G solvation = 54.035174 kcal Electronic energy + Delta-G solvation = -23909.476881 eV Core-core repulsion = 20589.520700 eV Total energy + Delta-G solvation = -3319.956181 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.07855 -39.02574 -37.98708 -34.22879 -33.48007 -32.41096 -31.15862 -31.07963 -30.40217 -28.31909 -26.89308 -25.43779 -24.01740 -23.04637 -22.04988 -21.14596 -20.99474 -19.94192 -18.31690 -17.49686 -16.10977 -15.81459 -15.68345 -15.04970 -14.95119 -14.40030 -14.30959 -14.09184 -13.81133 -13.68662 -13.57155 -13.09181 -12.91034 -12.76028 -12.69068 -12.44357 -12.20150 -11.96576 -11.85614 -11.54107 -11.46506 -11.00710 -10.81317 -10.71178 -10.56925 -10.09356 -9.71833 -9.60354 -9.32974 -9.15926 -8.69419 -8.63405 -8.03040 -7.73145 -7.69559 -7.27106 -4.83775 0.58093 1.20023 1.52990 1.73572 2.49757 2.56089 3.54795 3.60778 3.67126 4.01830 4.07110 4.42990 4.50003 4.56396 4.60983 4.74105 4.82686 5.02508 5.05137 5.12547 5.22871 5.23754 5.36715 5.45473 5.56282 5.66933 5.68544 5.77879 5.81722 5.85380 6.01443 6.06844 6.16752 6.21385 6.24569 6.29572 6.34537 6.38866 6.46562 6.57036 6.70396 6.77539 6.78745 6.94006 7.03264 7.21469 7.34536 7.41778 7.59793 8.01965 8.22799 8.58097 9.42074 9.96452 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.029603 B = 0.002686 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.634215 B =10422.222951 C =11042.025258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.071 4.071 3 C -0.110 4.110 4 C -0.060 4.060 5 C -0.032 4.032 6 C -0.115 4.115 7 C -0.118 4.118 8 C -0.127 4.127 9 C -0.118 4.118 10 C -0.115 4.115 11 C -0.114 4.114 12 C -0.103 4.103 13 C -0.020 4.020 14 C 0.014 3.986 15 C -0.299 4.299 16 C 0.150 3.850 17 N -0.574 5.574 18 C 0.250 3.750 19 C -0.472 4.472 20 H 0.081 0.919 21 C 0.042 3.958 22 N -0.803 5.803 23 Si 1.156 2.844 24 H -0.333 1.333 25 H -0.279 1.279 26 H -0.293 1.293 27 C -0.240 4.240 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.106 0.894 40 H 0.129 0.871 41 H 0.283 0.717 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.144 21.048 5.142 22.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.071 4.071 3 C -0.128 4.128 4 C -0.060 4.060 5 C -0.032 4.032 6 C -0.133 4.133 7 C -0.136 4.136 8 C -0.145 4.145 9 C -0.136 4.136 10 C -0.133 4.133 11 C -0.132 4.132 12 C -0.121 4.121 13 C -0.020 4.020 14 C 0.008 3.992 15 C -0.322 4.322 16 C -0.010 4.010 17 N -0.293 5.293 18 C 0.127 3.873 19 C -0.503 4.503 20 H 0.099 0.901 21 C -0.179 4.179 22 N -0.424 5.424 23 Si 0.991 3.009 24 H -0.267 1.267 25 H -0.207 1.207 26 H -0.222 1.222 27 C -0.262 4.262 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.144 0.856 39 H 0.124 0.876 40 H 0.146 0.854 41 H 0.094 0.906 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.612 19.226 5.425 20.503 hybrid contribution 2.107 1.918 -0.606 2.913 sum 6.719 21.144 4.819 22.704 Atomic orbital electron populations 1.20884 0.90820 1.02935 1.02362 1.19882 0.96331 0.91783 0.99095 1.20944 0.92933 0.97422 1.01474 1.18688 0.92923 0.91772 1.02660 1.18867 0.93017 0.92298 0.99031 1.21278 1.00072 0.91718 1.00250 1.21082 0.94398 0.97850 1.00264 1.21182 0.94423 0.98015 1.00929 1.21085 0.99870 0.92397 1.00216 1.21285 0.93442 0.98402 1.00169 1.21062 0.99509 0.91509 1.01082 1.21194 0.93362 0.98011 0.99504 1.19007 0.92793 0.92494 0.97739 1.18646 0.94256 0.91123 0.95125 1.21181 1.04586 1.00315 1.06091 1.22043 0.95649 0.88985 0.94348 1.66510 1.21621 1.31748 1.09400 1.18583 0.87561 0.91452 0.89712 1.20796 1.11452 1.01969 1.16102 0.90096 1.27865 1.03067 0.89999 0.96965 1.70655 1.26200 1.30857 1.14695 0.81789 0.71561 0.71856 0.75672 1.26680 1.20663 1.22157 1.21717 1.05775 0.95120 1.03595 0.91111 0.92318 0.90274 0.85977 0.85722 0.86020 0.86222 0.86004 0.85674 0.85972 0.85578 0.87586 0.85363 0.90598 0.87633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 8.48 36.01 0.31 -1.26 16 2 C -0.07 -1.08 5.87 -104.35 -0.61 -1.70 16 3 C -0.11 -1.48 9.06 -39.31 -0.36 -1.84 16 4 C -0.06 -0.81 5.88 -104.85 -0.62 -1.43 16 5 C -0.03 -0.38 5.88 -104.90 -0.62 -1.00 16 6 C -0.12 -1.20 9.43 -39.24 -0.37 -1.57 16 7 C -0.12 -1.06 10.03 -39.63 -0.40 -1.45 16 8 C -0.13 -1.09 10.04 -39.51 -0.40 -1.49 16 9 C -0.12 -1.07 10.03 -39.63 -0.40 -1.46 16 10 C -0.12 -1.21 9.43 -39.24 -0.37 -1.58 16 11 C -0.11 -1.56 9.41 -39.31 -0.37 -1.93 16 12 C -0.10 -1.63 9.52 -39.31 -0.37 -2.00 16 13 C -0.02 -0.35 5.52 -104.85 -0.58 -0.93 16 14 C 0.01 0.29 4.71 -104.65 -0.49 -0.20 16 15 C -0.30 -5.87 8.03 -38.80 -0.31 -6.18 16 16 C 0.15 3.20 11.17 -17.61 -0.20 3.01 16 17 N -0.57 -14.28 4.54 -11.21 -0.05 -14.33 16 18 C 0.25 6.41 6.39 -85.02 -0.54 5.86 16 19 C -0.47 -12.75 9.58 -37.70 -0.36 -13.11 16 20 H 0.08 2.18 8.05 -52.49 -0.42 1.76 16 21 C 0.04 1.15 5.52 -17.34 -0.10 1.05 16 22 N -0.80 -21.82 13.65 55.55 0.76 -21.06 16 23 Si 1.16 28.30 25.56 -169.99 -4.34 23.95 16 24 H -0.33 -8.07 7.11 56.52 0.40 -7.67 16 25 H -0.28 -6.78 6.67 56.52 0.38 -6.40 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 C -0.24 -5.51 9.35 -38.33 -0.36 -5.86 16 28 H 0.07 0.89 7.54 -51.93 -0.39 0.50 16 29 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 30 H 0.08 1.27 6.45 -51.93 -0.34 0.93 16 31 H 0.12 1.34 6.19 -52.49 -0.32 1.02 16 32 H 0.12 1.13 6.20 -52.48 -0.33 0.80 16 33 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 35 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.13 1.16 6.20 -52.49 -0.33 0.84 16 37 H 0.12 1.37 6.19 -52.49 -0.32 1.05 16 38 H 0.13 1.96 8.05 -52.48 -0.42 1.54 16 39 H 0.11 1.82 6.94 -52.49 -0.36 1.46 16 40 H 0.13 2.31 8.06 -52.49 -0.42 1.89 16 41 H 0.28 7.35 8.72 -40.82 -0.36 6.99 16 42 H 0.11 2.33 8.06 -52.48 -0.42 1.91 16 LS Contribution 346.86 15.07 5.23 5.23 Total: -1.00 -29.21 346.86 -10.87 -40.08 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -4.95 Total: 1.22 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: -7.51 Total: -35.08 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.71 Total: -35.40 kcal Atomic # 14 Polarization: 28.30 SS G_CDS: -4.34 Total: 23.95 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.21 -10.87 -40.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244835867.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.115 kcal (2) G-P(sol) polarization free energy of solvation -29.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds