Wall clock time and date at job start Tue Mar 31 2020 11:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37764 * 120.00689 * 2 1 4 4 C 1.39434 * 120.00515 * 180.25373 * 3 2 1 5 5 C 1.48306 * 120.00173 * 179.76582 * 4 3 2 6 6 C 1.39386 * 120.12303 * 359.70460 * 5 4 3 7 7 C 1.38012 * 119.87027 * 179.76818 * 6 5 4 8 8 C 1.38324 * 120.12467 * 0.53223 * 7 6 5 9 9 C 1.38334 * 120.25395 * 359.69699 * 8 7 6 10 10 C 1.38003 * 120.12421 * 0.04300 * 9 8 7 11 11 C 1.39473 * 119.99685 * 359.74412 * 4 3 2 12 12 C 1.37729 * 120.00157 * 0.02562 * 11 4 3 13 13 C 1.39443 * 119.99868 * 179.74493 * 2 1 3 14 14 C 1.48306 * 119.99874 * 0.02562 * 13 2 1 15 15 C 1.40078 * 120.82918 * 309.72380 * 14 13 2 16 16 C 1.38489 * 119.42067 * 180.02562 * 15 14 13 17 17 N 1.31482 * 121.15274 * 359.97438 * 16 15 14 18 18 C 1.33657 * 121.80296 * 359.97438 * 17 16 15 19 19 C 1.41426 * 119.77706 * 179.97438 * 18 17 16 20 20 H 1.07997 * 119.99862 * 187.07595 * 19 18 17 21 21 C 1.40033 * 119.99947 * 7.07127 * 19 18 17 22 22 N 1.30741 * 120.00184 * 182.56406 * 21 19 18 23 23 Si 1.86809 * 120.00169 * 2.56807 * 21 19 18 24 24 H 1.48499 * 109.47093 * 179.97438 * 23 21 19 25 25 H 1.48503 * 109.46853 * 300.00053 * 23 21 19 26 26 H 1.48498 * 109.46880 * 59.99554 * 23 21 19 27 27 C 1.39358 * 120.82413 * 129.99991 * 14 13 2 28 28 H 1.09002 * 109.46693 * 270.25509 * 1 2 3 29 29 H 1.08999 * 109.47004 * 30.25339 * 1 2 3 30 30 H 1.09001 * 109.47454 * 150.25805 * 1 2 3 31 31 H 1.08001 * 119.99269 * 0.02562 * 3 2 1 32 32 H 1.08003 * 120.06636 * 0.02562 * 6 5 4 33 33 H 1.08001 * 119.93175 * 180.24911 * 7 6 5 34 34 H 1.07997 * 119.87168 * 179.72330 * 8 7 6 35 35 H 1.07992 * 119.93527 * 180.02562 * 9 8 7 36 36 H 1.07998 * 120.06351 * 179.97438 * 10 9 8 37 37 H 1.08002 * 119.99810 * 179.97438 * 11 4 3 38 38 H 1.08003 * 119.99613 * 179.97438 * 12 11 4 39 39 H 1.08000 * 120.28846 * 0.04197 * 15 14 13 40 40 H 1.08000 * 119.42415 * 179.97438 * 16 15 14 41 41 H 0.96999 * 119.99740 * 354.85375 * 22 21 19 42 42 H 1.08005 * 120.58835 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1930 0.0000 4 6 3.5903 1.1930 -0.0053 5 6 4.3319 2.4773 -0.0106 6 6 3.6376 3.6859 -0.0164 7 6 4.3330 4.8781 -0.0164 8 6 5.7162 4.8749 -0.0218 9 6 6.4105 3.6784 -0.0209 10 6 5.7257 2.4803 -0.0155 11 6 4.2876 -0.0150 -0.0053 12 6 3.5989 -1.2077 -0.0005 13 6 2.2042 -1.2076 0.0054 14 6 1.4626 -2.4919 0.0105 15 6 0.4376 -2.7253 0.9363 16 6 -0.2355 -3.9355 0.9153 17 7 0.0704 -4.8689 0.0413 18 6 1.0389 -4.6964 -0.8635 19 6 1.3328 -5.7296 -1.7834 20 1 2.1863 -5.6420 -2.4393 21 6 0.5171 -6.8663 -1.8437 22 7 0.8171 -7.8437 -2.6586 23 14 -0.9998 -6.9861 -0.7600 24 1 -1.6873 -8.2780 -1.0119 25 1 -0.5958 -6.9096 0.6670 26 1 -1.9221 -5.8654 -1.0740 27 6 1.7720 -3.4989 -0.9019 28 1 -0.3633 0.0046 1.0277 29 1 -0.3633 0.8877 -0.5178 30 1 -0.3634 -0.8923 -0.5098 31 1 1.6559 2.1283 0.0004 32 1 2.5576 3.6895 -0.0167 33 1 3.7960 5.8151 -0.0169 34 1 6.2562 5.8102 -0.0263 35 1 7.4904 3.6820 -0.0247 36 1 6.2687 1.5468 -0.0152 37 1 5.3676 -0.0150 -0.0099 38 1 4.1389 -2.1430 -0.0009 39 1 0.1743 -1.9680 1.6599 40 1 -1.0256 -4.1156 1.6293 41 1 1.5608 -7.7508 -3.2744 42 1 2.5584 -3.3590 -1.6289 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244835867.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:14 Heat of formation + Delta-G solvation = 42.140101 kcal Electronic energy + Delta-G solvation = -23909.992690 eV Core-core repulsion = 20589.520700 eV Total energy + Delta-G solvation = -3320.471990 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.22068 -40.34345 -39.20208 -35.91782 -34.92709 -33.58739 -32.40110 -32.23267 -31.79957 -29.42733 -28.09372 -27.24722 -25.21113 -23.89206 -23.43758 -22.73119 -22.09596 -21.16143 -20.12386 -18.39032 -17.58340 -17.10572 -16.65098 -16.52801 -16.38719 -15.94802 -15.28960 -15.12742 -15.08520 -14.88803 -14.58800 -14.53733 -14.34027 -14.10292 -13.98358 -13.84123 -13.77968 -13.16881 -12.97562 -12.64606 -12.59308 -12.44428 -12.25469 -12.02020 -11.79275 -11.61923 -11.58737 -11.31750 -10.84463 -10.09529 -9.89519 -9.85788 -9.73042 -9.65353 -9.25113 -8.81507 -6.84132 -0.41938 0.40780 0.50365 0.54449 0.67474 1.11512 1.61843 1.73099 2.07734 2.48620 2.58570 2.70227 3.11334 3.52737 3.55505 3.72274 3.75911 3.89879 3.96338 4.11404 4.15271 4.23009 4.33905 4.37168 4.49090 4.55580 4.59123 4.63708 4.70828 4.78250 4.83533 4.84642 4.95018 4.99656 5.13947 5.16342 5.27921 5.30272 5.34386 5.35839 5.41023 5.53313 5.58038 5.61538 5.71345 5.77650 5.86040 5.98102 6.01099 6.09843 6.34832 6.64137 7.56556 7.94583 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.029603 B = 0.002686 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.634215 B =10422.222951 C =11042.025258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.071 4.071 3 C -0.112 4.112 4 C -0.049 4.049 5 C -0.062 4.062 6 C -0.122 4.122 7 C -0.123 4.123 8 C -0.124 4.124 9 C -0.125 4.125 10 C -0.126 4.126 11 C -0.120 4.120 12 C -0.111 4.111 13 C -0.060 4.060 14 C 0.029 3.971 15 C -0.271 4.271 16 C 0.133 3.867 17 N -0.594 5.594 18 C 0.239 3.761 19 C -0.513 4.513 20 H 0.060 0.940 21 C 0.014 3.986 22 N -0.832 5.832 23 Si 1.192 2.808 24 H -0.332 1.332 25 H -0.276 1.276 26 H -0.294 1.294 27 C -0.262 4.262 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.151 0.849 32 H 0.137 0.863 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.130 0.870 37 H 0.143 0.857 38 H 0.117 0.883 39 H 0.142 0.858 40 H 0.167 0.833 41 H 0.279 0.721 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.022 25.740 7.215 27.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.071 4.071 3 C -0.130 4.130 4 C -0.049 4.049 5 C -0.062 4.062 6 C -0.139 4.139 7 C -0.141 4.141 8 C -0.142 4.142 9 C -0.143 4.143 10 C -0.144 4.144 11 C -0.137 4.137 12 C -0.129 4.129 13 C -0.060 4.060 14 C 0.022 3.978 15 C -0.293 4.293 16 C -0.025 4.025 17 N -0.313 5.313 18 C 0.115 3.885 19 C -0.546 4.546 20 H 0.078 0.922 21 C -0.202 4.202 22 N -0.455 5.455 23 Si 1.024 2.976 24 H -0.266 1.266 25 H -0.204 1.204 26 H -0.222 1.222 27 C -0.284 4.284 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.169 0.831 32 H 0.154 0.846 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.161 0.839 36 H 0.148 0.852 37 H 0.161 0.839 38 H 0.135 0.865 39 H 0.160 0.840 40 H 0.184 0.816 41 H 0.089 0.911 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.495 23.934 7.511 25.484 hybrid contribution 2.295 0.967 -1.088 2.718 sum 6.789 24.901 6.423 26.597 Atomic orbital electron populations 1.20906 0.89718 1.02890 1.03386 1.20064 0.97175 0.91459 0.98382 1.21227 0.93117 0.97849 1.00769 1.18996 0.93278 0.92446 1.00147 1.18915 0.93616 0.91980 1.01642 1.21510 1.00872 0.91717 0.99827 1.21430 0.94834 0.98384 0.99465 1.21599 0.94634 0.98952 0.99016 1.21403 1.01138 0.92085 0.99666 1.21490 0.93277 0.99462 1.00130 1.21268 1.00652 0.90946 1.00849 1.21217 0.93112 0.98676 0.99923 1.18939 0.93328 0.91893 1.01845 1.18960 0.93730 0.91632 0.93430 1.21662 1.02474 1.00135 1.05001 1.22756 0.96652 0.88919 0.94191 1.66447 1.21571 1.33369 1.09945 1.18665 0.88277 0.91863 0.89700 1.20728 1.12155 1.03692 1.18019 0.92190 1.28619 1.04324 0.89882 0.97379 1.70676 1.27122 1.31515 1.16218 0.81327 0.69824 0.71618 0.74830 1.26592 1.20385 1.22183 1.21739 1.06209 0.95564 1.04899 0.89434 0.89789 0.92914 0.83142 0.84566 0.83567 0.83633 0.83908 0.85192 0.83929 0.86477 0.84020 0.81571 0.91068 0.88219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.74 8.48 71.24 0.60 -2.14 16 2 C -0.07 -1.99 5.87 -19.69 -0.12 -2.11 16 3 C -0.11 -2.68 9.06 22.45 0.20 -2.48 16 4 C -0.05 -1.19 5.88 -20.01 -0.12 -1.31 16 5 C -0.06 -1.29 5.88 -20.05 -0.12 -1.41 16 6 C -0.12 -2.11 9.43 22.49 0.21 -1.90 16 7 C -0.12 -1.72 10.03 22.24 0.22 -1.50 16 8 C -0.12 -1.64 10.04 22.31 0.22 -1.41 16 9 C -0.13 -1.86 10.03 22.24 0.22 -1.64 16 10 C -0.13 -2.34 9.43 22.49 0.21 -2.13 16 11 C -0.12 -3.12 9.41 22.45 0.21 -2.91 16 12 C -0.11 -3.50 9.52 22.45 0.21 -3.29 16 13 C -0.06 -2.04 5.52 -20.01 -0.11 -2.15 16 14 C 0.03 1.15 4.71 -19.88 -0.09 1.06 16 15 C -0.27 -10.00 8.03 22.78 0.18 -9.81 16 16 C 0.13 5.42 11.17 84.81 0.95 6.37 16 17 N -0.59 -29.55 4.54 -189.37 -0.86 -30.41 16 18 C 0.24 12.71 6.39 40.19 0.26 12.97 16 19 C -0.51 -29.57 9.58 23.49 0.23 -29.34 16 20 H 0.06 3.54 8.05 -2.91 -0.02 3.52 16 21 C 0.01 0.78 5.52 85.29 0.47 1.25 16 22 N -0.83 -47.75 13.65 21.84 0.30 -47.45 16 23 Si 1.19 58.82 25.56 68.60 1.75 60.57 16 24 H -0.33 -16.07 7.11 99.48 0.71 -15.36 16 25 H -0.28 -13.31 6.67 99.48 0.66 -12.65 16 26 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 27 C -0.26 -12.47 9.35 23.08 0.22 -12.25 16 28 H 0.09 1.83 7.54 -2.39 -0.02 1.81 16 29 H 0.08 1.61 8.09 -2.39 -0.02 1.59 16 30 H 0.05 1.57 6.45 -2.39 -0.02 1.55 16 31 H 0.15 2.68 6.19 -2.91 -0.02 2.66 16 32 H 0.14 1.93 6.20 -2.91 -0.02 1.91 16 33 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 34 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 35 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 36 H 0.13 2.15 6.20 -2.91 -0.02 2.14 16 37 H 0.14 3.01 6.19 -2.91 -0.02 2.99 16 38 H 0.12 3.78 8.05 -2.91 -0.02 3.75 16 39 H 0.14 4.25 6.94 -2.91 -0.02 4.23 16 40 H 0.17 5.40 8.06 -2.91 -0.02 5.37 16 41 H 0.28 15.54 8.72 -92.71 -0.81 14.73 16 42 H 0.10 4.72 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -66.47 346.86 6.22 -60.25 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.96 Total: 13.17 kcal Atomic # 6 Polarization: -60.19 SS G_CDS: 4.07 Total: -56.12 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: -0.56 Total: -77.86 kcal Atomic # 14 Polarization: 58.82 SS G_CDS: 1.75 Total: 60.57 kcal Total: -66.47 6.22 -60.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244835867.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.387 kcal (2) G-P(sol) polarization free energy of solvation -66.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds