Wall clock time and date at job start Tue Mar 31 2020 11:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37637 * 120.01201 * 2 1 4 4 C 1.39545 * 120.02209 * 180.29869 * 3 2 1 5 5 C 1.48235 * 119.97708 * 179.69812 * 4 3 2 6 6 C 1.39438 * 120.12836 * 359.70332 * 5 4 3 7 7 C 1.37988 * 119.86392 * 179.71922 * 6 5 4 8 8 C 1.38342 * 120.13583 * 0.55558 * 7 6 5 9 9 C 1.38350 * 120.25713 * 359.72098 * 8 7 6 10 10 C 1.37991 * 120.13013 * 359.97438 * 9 8 7 11 11 C 1.39575 * 120.04791 * 359.67712 * 4 3 2 12 12 C 1.37607 * 120.02623 * 0.02562 * 11 4 3 13 13 C 1.39736 * 120.01073 * 179.70029 * 2 1 3 14 14 C 1.47818 * 120.02618 * 359.97438 * 13 2 1 15 15 C 1.39970 * 119.45745 * 131.77312 * 14 13 2 16 16 C 1.36560 * 119.46470 * 179.97438 * 15 14 13 17 17 C 1.41329 * 118.42316 * 0.28025 * 16 15 14 18 18 C 1.40997 * 120.55779 * 179.72558 * 17 16 15 19 19 H 1.07997 * 120.00803 * 151.76716 * 18 17 16 20 20 C 1.40028 * 119.99649 * 331.76563 * 18 17 16 21 21 N 1.30784 * 120.00180 * 161.53718 * 20 18 17 22 22 Si 1.86802 * 119.99980 * 341.53742 * 20 18 17 23 23 H 1.48503 * 109.47018 * 90.61180 * 22 20 18 24 24 H 1.48497 * 109.47416 * 210.60932 * 22 20 18 25 25 H 1.48506 * 109.47184 * 330.61168 * 22 20 18 26 26 C 1.40987 * 118.89443 * 359.45140 * 17 16 15 27 27 N 1.31235 * 120.40820 * 0.56390 * 26 17 16 28 28 H 1.08997 * 109.47636 * 264.89058 * 1 2 3 29 29 H 1.09003 * 109.47058 * 24.89460 * 1 2 3 30 30 H 1.09000 * 109.47164 * 144.88793 * 1 2 3 31 31 H 1.07997 * 119.99091 * 359.97438 * 3 2 1 32 32 H 1.07994 * 120.06612 * 359.97438 * 6 5 4 33 33 H 1.08010 * 119.93344 * 180.27394 * 7 6 5 34 34 H 1.07999 * 119.87129 * 179.74327 * 8 7 6 35 35 H 1.07999 * 119.93368 * 179.97438 * 9 8 7 36 36 H 1.07999 * 120.06339 * 180.02562 * 10 9 8 37 37 H 1.08001 * 119.99369 * 179.97438 * 11 4 3 38 38 H 1.07996 * 120.01554 * 179.97438 * 12 11 4 39 39 H 1.07995 * 120.26717 * 359.96397 * 15 14 13 40 40 H 1.07999 * 120.79100 * 180.02562 * 16 15 14 41 41 H 0.97006 * 120.00164 * 180.02562 * 21 20 18 42 42 H 1.08004 * 119.79539 * 180.26911 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1918 0.0000 4 6 3.5909 1.1921 -0.0063 5 6 4.3313 2.4763 -0.0131 6 6 3.6361 3.6850 -0.0194 7 6 4.3308 4.8772 -0.0198 8 6 5.7142 4.8749 -0.0255 9 6 6.4094 3.6788 -0.0251 10 6 5.7256 2.4802 -0.0184 11 6 4.2900 -0.0160 -0.0058 12 6 3.6037 -1.2087 0.0004 13 6 2.2059 -1.2100 0.0063 14 6 1.4677 -2.4906 0.0136 15 6 1.8269 -3.4974 -0.8900 16 6 1.1453 -4.6807 -0.8830 17 6 0.0888 -4.8430 0.0415 18 6 -0.6487 -6.0440 0.0836 19 1 -1.1076 -6.3639 1.0075 20 6 -0.7861 -6.8221 -1.0724 21 7 -1.1401 -8.0775 -0.9775 22 14 -0.4639 -6.0669 -2.7503 23 1 0.9648 -6.2527 -3.1106 24 1 -1.3206 -6.7313 -3.7651 25 1 -0.7795 -4.6164 -2.7092 26 6 -0.2118 -3.7862 0.9249 27 7 0.4726 -2.6674 0.8794 28 1 -0.3634 -0.0915 1.0235 29 1 -0.3633 0.9322 -0.4326 30 1 -0.3633 -0.8407 -0.5911 31 1 1.6555 2.1271 -0.0004 32 1 2.5561 3.6880 -0.0198 33 1 3.7934 5.8141 -0.0202 34 1 6.2536 5.8106 -0.0300 35 1 7.4894 3.6831 -0.0300 36 1 6.2693 1.5471 -0.0176 37 1 5.3700 -0.0147 -0.0111 38 1 4.1449 -2.1433 0.0003 39 1 2.6365 -3.3396 -1.5871 40 1 1.4048 -5.4722 -1.5705 41 1 -1.2350 -8.6167 -1.7783 42 1 -1.0135 -3.8962 1.6403 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244837676.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:25 Heat of formation + Delta-G solvation = 63.534303 kcal Electronic energy + Delta-G solvation = -23870.069485 eV Core-core repulsion = 20550.525217 eV Total energy + Delta-G solvation = -3319.544268 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.88975 -38.94504 -37.81047 -34.33039 -33.20297 -32.18467 -31.40290 -31.00730 -30.54531 -28.59890 -26.76065 -25.39025 -23.36198 -22.96417 -22.18797 -21.50426 -20.69523 -19.90448 -17.68019 -17.45028 -16.48174 -15.70481 -15.58177 -15.36645 -14.90279 -14.29610 -14.11646 -13.88013 -13.69514 -13.65229 -13.50584 -13.10836 -12.92219 -12.72309 -12.61328 -12.49863 -12.13726 -11.83560 -11.62884 -11.49315 -11.35609 -11.30474 -10.94875 -10.82982 -10.49731 -10.33931 -10.06974 -9.65677 -9.48130 -9.06713 -8.61198 -8.43915 -8.26891 -8.14071 -7.41805 -7.25963 -4.72798 0.72682 1.29505 1.74533 1.85428 2.41342 2.60246 2.92832 3.04205 3.13515 3.67052 3.74433 4.17957 4.39601 4.65549 4.70041 4.83183 4.93430 5.15753 5.20563 5.26056 5.30846 5.33895 5.37524 5.56010 5.73540 5.80108 5.84833 5.90163 6.00424 6.13787 6.15560 6.22619 6.25825 6.29054 6.36377 6.38200 6.39627 6.49761 6.63084 6.66977 6.80166 6.87230 6.90322 7.00656 7.12244 7.21502 7.41569 7.48788 7.66483 8.02419 8.28177 8.44987 9.30634 9.73301 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.031485 B = 0.002629 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.104184 B =10649.169129 C =10910.354926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.070 4.070 3 C -0.108 4.108 4 C -0.074 4.074 5 C -0.026 4.026 6 C -0.118 4.118 7 C -0.117 4.117 8 C -0.131 4.131 9 C -0.118 4.118 10 C -0.118 4.118 11 C -0.111 4.111 12 C -0.117 4.117 13 C 0.022 3.978 14 C -0.013 4.013 15 C -0.092 4.092 16 C -0.223 4.223 17 C 0.048 3.952 18 C -0.417 4.417 19 H 0.098 0.902 20 C 0.081 3.919 21 N -0.785 5.785 22 Si 0.917 3.083 23 H -0.266 1.266 24 H -0.287 1.287 25 H -0.246 1.246 26 C 0.001 3.999 27 N -0.435 5.435 28 H 0.075 0.925 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.119 0.881 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.103 0.897 40 H 0.112 0.888 41 H 0.291 0.709 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.194 17.316 -1.370 19.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.071 4.071 3 C -0.125 4.125 4 C -0.074 4.074 5 C -0.026 4.026 6 C -0.136 4.136 7 C -0.135 4.135 8 C -0.149 4.149 9 C -0.136 4.136 10 C -0.136 4.136 11 C -0.129 4.129 12 C -0.136 4.136 13 C 0.022 3.978 14 C -0.145 4.145 15 C -0.113 4.113 16 C -0.247 4.247 17 C 0.043 3.957 18 C -0.445 4.445 19 H 0.116 0.884 20 C -0.141 4.141 21 N -0.407 5.407 22 Si 0.743 3.257 23 H -0.192 1.192 24 H -0.214 1.214 25 H -0.169 1.169 26 C -0.166 4.166 27 N -0.142 5.142 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.137 0.863 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.121 0.879 40 H 0.129 0.871 41 H 0.102 0.898 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.916 17.711 -0.892 19.849 hybrid contribution 0.410 -0.766 -1.343 1.600 sum 9.326 16.944 -2.236 19.470 Atomic orbital electron populations 1.20653 0.90836 1.01161 1.02919 1.19939 0.96384 0.91754 0.99027 1.20929 0.92865 0.97372 1.01382 1.18639 0.92891 0.91603 1.04272 1.18900 0.92954 0.92414 0.98319 1.21287 1.00089 0.91730 1.00476 1.21068 0.94380 0.97822 1.00276 1.21156 0.94410 0.97940 1.01436 1.21067 0.99752 0.92445 1.00307 1.21279 0.93494 0.98290 1.00551 1.20969 0.99168 0.91565 1.01215 1.21150 0.93405 0.97679 1.01376 1.18601 0.91914 0.91629 0.95695 1.18703 1.00866 0.93893 1.01058 1.21189 0.98643 0.93672 0.97747 1.21106 0.99946 0.98324 1.05361 1.18689 0.91397 0.93475 0.92173 1.19554 1.26006 1.00763 0.98137 0.88362 1.26320 0.91471 0.93775 1.02555 1.69661 1.31395 1.06356 1.33317 0.86255 0.78485 0.81581 0.79347 1.19167 1.21386 1.16919 1.22542 1.01351 0.89103 1.03588 1.67139 1.03984 1.24049 1.18997 0.90679 0.93225 0.91279 0.86312 0.85745 0.86139 0.86359 0.86148 0.85749 0.86317 0.86030 0.87875 0.87076 0.89792 0.84632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.62 8.70 36.01 0.31 -1.31 16 2 C -0.07 -1.21 5.90 -104.28 -0.62 -1.82 16 3 C -0.11 -1.60 9.04 -39.31 -0.36 -1.96 16 4 C -0.07 -1.06 5.88 -104.80 -0.62 -1.68 16 5 C -0.03 -0.33 5.88 -104.90 -0.62 -0.94 16 6 C -0.12 -1.34 9.43 -39.23 -0.37 -1.71 16 7 C -0.12 -1.14 10.03 -39.63 -0.40 -1.54 16 8 C -0.13 -1.21 10.04 -39.50 -0.40 -1.61 16 9 C -0.12 -1.14 10.03 -39.63 -0.40 -1.54 16 10 C -0.12 -1.33 9.43 -39.23 -0.37 -1.70 16 11 C -0.11 -1.60 9.41 -39.31 -0.37 -1.97 16 12 C -0.12 -1.93 9.41 -39.23 -0.37 -2.30 16 13 C 0.02 0.42 5.61 -104.84 -0.59 -0.17 16 14 C -0.01 -0.28 5.45 -82.76 -0.45 -0.73 16 15 C -0.09 -1.98 9.39 -39.54 -0.37 -2.35 16 16 C -0.22 -5.14 7.34 -39.01 -0.29 -5.42 16 17 C 0.05 1.15 5.15 -106.64 -0.55 0.60 16 18 C -0.42 -10.42 9.58 -37.87 -0.36 -10.79 16 19 H 0.10 2.53 8.06 -52.49 -0.42 2.11 16 20 C 0.08 1.97 5.42 -17.33 -0.09 1.88 16 21 N -0.79 -19.32 13.93 55.55 0.77 -18.54 16 22 Si 0.92 19.54 24.55 -169.99 -4.17 15.37 16 23 H -0.27 -5.49 6.44 56.52 0.36 -5.12 16 24 H -0.29 -5.85 7.11 56.52 0.40 -5.45 16 25 H -0.25 -5.46 7.03 56.52 0.40 -5.06 16 26 C 0.00 0.03 10.97 -16.77 -0.18 -0.15 16 27 N -0.43 -9.73 8.72 -9.11 -0.08 -9.81 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.05 0.67 8.05 -51.93 -0.42 0.25 16 30 H 0.07 1.28 7.00 -51.93 -0.36 0.92 16 31 H 0.12 1.49 6.19 -52.49 -0.32 1.16 16 32 H 0.12 1.26 6.19 -52.49 -0.33 0.93 16 33 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 34 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.12 1.23 6.19 -52.49 -0.33 0.90 16 37 H 0.12 1.40 6.19 -52.49 -0.32 1.07 16 38 H 0.12 1.87 7.98 -52.49 -0.42 1.46 16 39 H 0.10 1.94 7.98 -52.49 -0.42 1.52 16 40 H 0.11 2.51 4.47 -52.49 -0.23 2.28 16 41 H 0.29 6.44 8.30 -40.82 -0.34 6.10 16 42 H 0.14 2.87 8.06 -52.48 -0.42 2.44 16 LS Contribution 346.82 15.07 5.23 5.23 Total: -1.00 -26.73 346.82 -10.57 -37.30 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -4.87 Total: 7.65 kcal Atomic # 6 Polarization: -29.75 SS G_CDS: -7.45 Total: -37.20 kcal Atomic # 7 Polarization: -29.05 SS G_CDS: 0.69 Total: -28.35 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.17 Total: 15.37 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -26.73 -10.57 -37.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244837676.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.834 kcal (2) G-P(sol) polarization free energy of solvation -26.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds