Wall clock time and date at job start Tue Mar 31 2020 11:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37637 * 120.01201 * 2 1 4 4 C 1.39545 * 120.02209 * 180.29869 * 3 2 1 5 5 C 1.48235 * 119.97708 * 179.69812 * 4 3 2 6 6 C 1.39438 * 120.12836 * 359.70332 * 5 4 3 7 7 C 1.37988 * 119.86392 * 179.71922 * 6 5 4 8 8 C 1.38342 * 120.13583 * 0.55558 * 7 6 5 9 9 C 1.38350 * 120.25713 * 359.72098 * 8 7 6 10 10 C 1.37991 * 120.13013 * 359.97438 * 9 8 7 11 11 C 1.39575 * 120.04791 * 359.67712 * 4 3 2 12 12 C 1.37607 * 120.02623 * 0.02562 * 11 4 3 13 13 C 1.39736 * 120.01073 * 179.70029 * 2 1 3 14 14 C 1.47818 * 120.02618 * 359.97438 * 13 2 1 15 15 C 1.39970 * 119.45745 * 131.77312 * 14 13 2 16 16 C 1.36560 * 119.46470 * 179.97438 * 15 14 13 17 17 C 1.41329 * 118.42316 * 0.28025 * 16 15 14 18 18 C 1.40997 * 120.55779 * 179.72558 * 17 16 15 19 19 H 1.07997 * 120.00803 * 151.76716 * 18 17 16 20 20 C 1.40028 * 119.99649 * 331.76563 * 18 17 16 21 21 N 1.30784 * 120.00180 * 161.53718 * 20 18 17 22 22 Si 1.86802 * 119.99980 * 341.53742 * 20 18 17 23 23 H 1.48503 * 109.47018 * 90.61180 * 22 20 18 24 24 H 1.48497 * 109.47416 * 210.60932 * 22 20 18 25 25 H 1.48506 * 109.47184 * 330.61168 * 22 20 18 26 26 C 1.40987 * 118.89443 * 359.45140 * 17 16 15 27 27 N 1.31235 * 120.40820 * 0.56390 * 26 17 16 28 28 H 1.08997 * 109.47636 * 264.89058 * 1 2 3 29 29 H 1.09003 * 109.47058 * 24.89460 * 1 2 3 30 30 H 1.09000 * 109.47164 * 144.88793 * 1 2 3 31 31 H 1.07997 * 119.99091 * 359.97438 * 3 2 1 32 32 H 1.07994 * 120.06612 * 359.97438 * 6 5 4 33 33 H 1.08010 * 119.93344 * 180.27394 * 7 6 5 34 34 H 1.07999 * 119.87129 * 179.74327 * 8 7 6 35 35 H 1.07999 * 119.93368 * 179.97438 * 9 8 7 36 36 H 1.07999 * 120.06339 * 180.02562 * 10 9 8 37 37 H 1.08001 * 119.99369 * 179.97438 * 11 4 3 38 38 H 1.07996 * 120.01554 * 179.97438 * 12 11 4 39 39 H 1.07995 * 120.26717 * 359.96397 * 15 14 13 40 40 H 1.07999 * 120.79100 * 180.02562 * 16 15 14 41 41 H 0.97006 * 120.00164 * 180.02562 * 21 20 18 42 42 H 1.08004 * 119.79539 * 180.26911 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1918 0.0000 4 6 3.5909 1.1921 -0.0063 5 6 4.3313 2.4763 -0.0131 6 6 3.6361 3.6850 -0.0194 7 6 4.3308 4.8772 -0.0198 8 6 5.7142 4.8749 -0.0255 9 6 6.4094 3.6788 -0.0251 10 6 5.7256 2.4802 -0.0184 11 6 4.2900 -0.0160 -0.0058 12 6 3.6037 -1.2087 0.0004 13 6 2.2059 -1.2100 0.0063 14 6 1.4677 -2.4906 0.0136 15 6 1.8269 -3.4974 -0.8900 16 6 1.1453 -4.6807 -0.8830 17 6 0.0888 -4.8430 0.0415 18 6 -0.6487 -6.0440 0.0836 19 1 -1.1076 -6.3639 1.0075 20 6 -0.7861 -6.8221 -1.0724 21 7 -1.1401 -8.0775 -0.9775 22 14 -0.4639 -6.0669 -2.7503 23 1 0.9648 -6.2527 -3.1106 24 1 -1.3206 -6.7313 -3.7651 25 1 -0.7795 -4.6164 -2.7092 26 6 -0.2118 -3.7862 0.9249 27 7 0.4726 -2.6674 0.8794 28 1 -0.3634 -0.0915 1.0235 29 1 -0.3633 0.9322 -0.4326 30 1 -0.3633 -0.8407 -0.5911 31 1 1.6555 2.1271 -0.0004 32 1 2.5561 3.6880 -0.0198 33 1 3.7934 5.8141 -0.0202 34 1 6.2536 5.8106 -0.0300 35 1 7.4894 3.6831 -0.0300 36 1 6.2693 1.5471 -0.0176 37 1 5.3700 -0.0147 -0.0111 38 1 4.1449 -2.1433 0.0003 39 1 2.6365 -3.3396 -1.5871 40 1 1.4048 -5.4722 -1.5705 41 1 -1.2350 -8.6167 -1.7783 42 1 -1.0135 -3.8962 1.6403 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244837676.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:24 Heat of formation + Delta-G solvation = 53.123731 kcal Electronic energy + Delta-G solvation = -23870.520921 eV Core-core repulsion = 20550.525217 eV Total energy + Delta-G solvation = -3319.995704 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.132 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.10725 -40.28103 -39.03349 -36.04975 -34.46572 -33.45542 -33.11490 -32.07470 -31.73460 -29.83390 -28.08855 -26.91500 -24.67661 -24.09986 -23.58547 -22.89869 -21.94532 -21.06636 -19.49090 -18.50827 -17.84726 -17.20237 -16.80562 -16.56841 -16.30882 -15.51437 -15.28891 -15.20778 -15.02161 -14.93379 -14.63785 -14.51878 -14.24445 -14.01231 -13.86213 -13.83214 -13.69466 -13.34188 -13.03404 -12.74801 -12.68405 -12.55227 -12.23642 -12.09027 -11.88354 -11.77721 -11.52977 -11.38818 -10.61289 -10.38104 -9.99772 -9.81881 -9.69793 -9.62589 -9.06373 -8.71662 -6.59869 -0.32481 0.46225 0.52754 0.54828 0.76049 1.07050 1.21261 1.34904 1.42498 2.01654 2.48004 2.74691 3.17527 3.44881 3.63706 3.76042 3.82799 3.99288 4.10599 4.16090 4.23248 4.28032 4.35633 4.43381 4.45104 4.56638 4.59259 4.69353 4.74173 4.84246 4.87015 4.90734 4.95831 5.02114 5.10160 5.19970 5.27293 5.35641 5.37348 5.40483 5.57376 5.63527 5.65091 5.65431 5.79569 5.84988 5.90446 6.08583 6.14455 6.16806 6.47002 6.60010 7.52529 7.99354 Molecular weight = 315.13amu Principal moments of inertia in cm(-1) A = 0.031485 B = 0.002629 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.104184 B =10649.169129 C =10910.354926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.078 4.078 3 C -0.112 4.112 4 C -0.059 4.059 5 C -0.057 4.057 6 C -0.126 4.126 7 C -0.124 4.124 8 C -0.127 4.127 9 C -0.124 4.124 10 C -0.125 4.125 11 C -0.114 4.114 12 C -0.116 4.116 13 C -0.022 4.022 14 C 0.007 3.993 15 C -0.101 4.101 16 C -0.227 4.227 17 C 0.034 3.966 18 C -0.453 4.453 19 H 0.072 0.928 20 C 0.053 3.947 21 N -0.822 5.822 22 Si 0.963 3.037 23 H -0.252 1.252 24 H -0.270 1.270 25 H -0.263 1.263 26 C -0.012 4.012 27 N -0.445 5.445 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.040 0.960 31 H 0.143 0.857 32 H 0.131 0.869 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.134 0.866 37 H 0.147 0.853 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.116 0.884 41 H 0.301 0.699 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.006 21.207 -2.460 24.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.079 4.079 3 C -0.130 4.130 4 C -0.060 4.060 5 C -0.057 4.057 6 C -0.144 4.144 7 C -0.142 4.142 8 C -0.145 4.145 9 C -0.141 4.141 10 C -0.143 4.143 11 C -0.131 4.131 12 C -0.135 4.135 13 C -0.023 4.023 14 C -0.127 4.127 15 C -0.121 4.121 16 C -0.252 4.252 17 C 0.029 3.971 18 C -0.482 4.482 19 H 0.090 0.910 20 C -0.166 4.166 21 N -0.446 5.446 22 Si 0.787 3.213 23 H -0.177 1.177 24 H -0.196 1.196 25 H -0.187 1.187 26 C -0.177 4.177 27 N -0.152 5.152 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.160 0.840 32 H 0.149 0.851 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.152 0.848 37 H 0.165 0.835 38 H 0.146 0.854 39 H 0.150 0.850 40 H 0.134 0.866 41 H 0.112 0.888 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 11.712 21.581 -1.965 24.633 hybrid contribution -0.213 -1.511 -0.916 1.779 sum 11.499 20.071 -2.881 23.310 Atomic orbital electron populations 1.20594 0.90847 1.01488 1.02150 1.20058 0.96584 0.92123 0.99139 1.21151 0.93397 0.97418 1.01034 1.18970 0.92909 0.92683 1.01409 1.18937 0.93714 0.91909 1.01145 1.21496 1.00700 0.91966 1.00258 1.21400 0.94936 0.98227 0.99604 1.21585 0.94483 0.99036 0.99352 1.21411 1.01144 0.92032 0.99561 1.21502 0.93073 0.99541 1.00165 1.21258 1.00620 0.90777 1.00483 1.21263 0.92494 0.98935 1.00777 1.18639 0.92958 0.90840 0.99848 1.19315 0.99367 0.94937 0.99120 1.21516 0.99250 0.93076 0.98270 1.21278 0.99631 0.99185 1.05089 1.18790 0.91835 0.93425 0.93035 1.19458 1.28374 1.02366 0.98000 0.91020 1.26854 0.91161 0.93906 1.04693 1.69666 1.33220 1.07136 1.34532 0.85558 0.79361 0.79799 0.76597 1.17681 1.19617 1.18693 1.22713 1.01899 0.89222 1.03818 1.67238 1.04655 1.23583 1.19699 0.91432 0.90302 0.94059 0.83988 0.85091 0.83840 0.83690 0.83749 0.84806 0.83517 0.85372 0.84999 0.86647 0.88824 0.84022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.03 8.70 71.24 0.62 -2.41 16 2 C -0.08 -2.59 5.90 -19.64 -0.12 -2.71 16 3 C -0.11 -3.10 9.04 22.44 0.20 -2.90 16 4 C -0.06 -1.56 5.88 -19.98 -0.12 -1.68 16 5 C -0.06 -1.27 5.88 -20.04 -0.12 -1.39 16 6 C -0.13 -2.45 9.43 22.50 0.21 -2.24 16 7 C -0.12 -1.92 10.03 22.24 0.22 -1.70 16 8 C -0.13 -1.78 10.04 22.32 0.22 -1.56 16 9 C -0.12 -1.88 10.03 22.24 0.22 -1.66 16 10 C -0.13 -2.37 9.43 22.50 0.21 -2.15 16 11 C -0.11 -2.98 9.41 22.44 0.21 -2.76 16 12 C -0.12 -3.60 9.41 22.49 0.21 -3.39 16 13 C -0.02 -0.81 5.61 -20.01 -0.11 -0.92 16 14 C 0.01 0.29 5.45 41.91 0.23 0.52 16 15 C -0.10 -4.29 9.39 22.30 0.21 -4.08 16 16 C -0.23 -10.55 7.34 22.64 0.17 -10.39 16 17 C 0.03 1.70 5.15 -21.17 -0.11 1.59 16 18 C -0.45 -24.05 9.58 23.38 0.22 -23.83 16 19 H 0.07 4.02 8.06 -2.91 -0.02 4.00 16 20 C 0.05 2.65 5.42 85.28 0.46 3.11 16 21 N -0.82 -41.98 13.93 21.84 0.30 -41.68 16 22 Si 0.96 40.60 24.55 68.60 1.68 42.29 16 23 H -0.25 -9.94 6.44 99.48 0.64 -9.30 16 24 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 25 H -0.26 -11.68 7.03 99.48 0.70 -10.98 16 26 C -0.01 -0.56 10.97 85.46 0.94 0.38 16 27 N -0.44 -20.31 8.72 -182.73 -1.59 -21.91 16 28 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.08 2.00 8.05 -2.39 -0.02 1.98 16 30 H 0.04 1.54 7.00 -2.39 -0.02 1.52 16 31 H 0.14 3.15 6.19 -2.91 -0.02 3.13 16 32 H 0.13 2.25 6.19 -2.91 -0.02 2.23 16 33 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 34 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 35 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 36 H 0.13 2.15 6.19 -2.91 -0.02 2.14 16 37 H 0.15 2.94 6.19 -2.91 -0.02 2.92 16 38 H 0.13 3.71 7.98 -2.91 -0.02 3.69 16 39 H 0.13 4.74 7.98 -2.91 -0.02 4.72 16 40 H 0.12 5.20 4.47 -2.91 -0.01 5.19 16 41 H 0.30 13.66 8.30 -92.70 -0.77 12.90 16 42 H 0.14 6.37 8.06 -2.91 -0.02 6.35 16 Total: -1.00 -59.82 346.82 5.36 -54.45 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: 0.97 Total: 27.01 kcal Atomic # 6 Polarization: -64.16 SS G_CDS: 4.00 Total: -60.16 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: -1.29 Total: -63.58 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 1.68 Total: 42.29 kcal Total: -59.82 5.36 -54.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244837676.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.577 kcal (2) G-P(sol) polarization free energy of solvation -59.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds