Wall clock time and date at job start Tue Mar 31 2020 11:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35992 * 116.99850 * 2 1 4 4 C 1.38717 * 119.97495 * 180.02562 * 3 2 1 5 5 C 1.38097 * 120.01750 * 179.97438 * 4 3 2 6 6 C 1.50700 * 120.00755 * 180.02562 * 5 4 3 7 7 C 1.38885 * 119.98027 * 0.02903 * 5 4 3 8 8 N 1.39938 * 120.02209 * 180.02562 * 7 5 4 9 9 C 1.39780 * 120.00636 * 95.02609 * 8 7 5 10 10 C 1.39438 * 119.91749 * 353.25308 * 9 8 7 11 11 C 1.38353 * 120.46282 * 180.22734 * 10 9 8 12 12 C 1.38012 * 120.29591 * 359.49030 * 11 10 9 13 13 F 1.35095 * 120.09324 * 180.22621 * 12 11 10 14 14 C 1.41030 * 119.81683 * 0.50670 * 12 11 10 15 15 C 1.41294 * 120.22133 * 179.76765 * 14 12 11 16 16 H 1.08007 * 120.00126 * 332.26641 * 15 14 12 17 17 C 1.39913 * 119.99813 * 152.26073 * 15 14 12 18 18 N 1.30865 * 119.99715 * 169.88634 * 17 15 14 19 19 Si 1.86790 * 120.00169 * 349.89025 * 17 15 14 20 20 H 1.48498 * 109.47254 * 88.98239 * 19 17 15 21 21 H 1.48505 * 109.47165 * 208.98396 * 19 17 15 22 22 H 1.48499 * 109.47044 * 328.98306 * 19 17 15 23 23 C 1.38190 * 119.91963 * 173.22792 * 9 8 7 24 24 C 1.38884 * 119.95903 * 0.26759 * 7 5 4 25 25 C 1.50701 * 120.01214 * 179.70434 * 24 7 5 26 26 C 1.38099 * 119.97927 * 359.40944 * 24 7 5 27 27 H 1.09007 * 109.46461 * 299.99143 * 1 2 3 28 28 H 1.08990 * 109.47192 * 59.99186 * 1 2 3 29 29 H 1.08994 * 109.47187 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.98994 * 0.02562 * 4 3 2 31 31 H 1.09000 * 109.47017 * 269.97847 * 6 5 4 32 32 H 1.08997 * 109.46939 * 29.98079 * 6 5 4 33 33 H 1.08998 * 109.46895 * 149.98255 * 6 5 4 34 34 H 0.97007 * 119.99300 * 275.03245 * 8 7 5 35 35 H 1.08001 * 119.76360 * 359.95307 * 10 9 8 36 36 H 1.08008 * 119.85198 * 179.74327 * 11 10 9 37 37 H 0.96994 * 119.99685 * 180.02562 * 18 17 15 38 38 H 1.08003 * 120.14780 * 0.02562 * 23 9 8 39 39 H 1.09001 * 109.47068 * 92.08223 * 25 24 7 40 40 H 1.09001 * 109.46925 * 212.07922 * 25 24 7 41 41 H 1.08997 * 109.47045 * 332.08538 * 25 24 7 42 42 H 1.08000 * 119.99358 * 180.31744 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4317 1.2837 -0.0005 5 6 4.0596 2.5137 -0.0011 6 6 5.5645 2.5917 -0.0022 7 6 3.3036 3.6788 -0.0005 8 7 3.9389 4.9257 -0.0015 9 6 4.1603 5.5964 -1.2078 10 6 3.8770 4.9635 -2.4176 11 6 4.0963 5.6151 -3.6182 12 6 4.5886 6.9043 -3.6309 13 9 4.7969 7.5383 -4.8055 14 6 4.8793 7.5559 -2.4145 15 6 5.3883 8.8740 -2.4177 16 1 5.9650 9.2282 -3.2594 17 6 5.1453 9.7204 -1.3304 18 7 5.7745 10.8641 -1.2381 19 14 3.9227 9.2179 -0.0106 20 1 4.6232 8.4398 1.0425 21 1 3.3172 10.4327 0.5917 22 1 2.8558 8.3816 -0.6168 23 6 4.6588 6.8852 -1.1984 24 6 1.9167 3.6057 0.0063 25 6 1.0952 4.8691 0.0137 26 6 1.2905 2.3748 0.0001 27 1 -0.3632 0.5138 0.8902 28 1 -0.3633 0.5139 -0.8898 29 1 -0.3633 -1.0276 0.0005 30 1 4.0194 0.3776 -0.0014 31 1 5.9281 2.6110 1.0251 32 1 5.9730 1.7216 -0.5160 33 1 5.8809 3.4991 -0.5166 34 1 4.2257 5.3245 0.8349 35 1 3.4879 3.9560 -2.4174 36 1 3.8773 5.1140 -4.5496 37 1 5.6063 11.4507 -0.4842 38 1 4.8781 7.3751 -0.2612 39 1 0.8607 5.1560 -1.0114 40 1 0.1699 4.6976 0.5637 41 1 1.6609 5.6674 0.4940 42 1 0.2120 2.3177 0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250037753.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:34 Heat of formation + Delta-G solvation = -38.730665 kcal Electronic energy + Delta-G solvation = -26065.471566 eV Core-core repulsion = 22310.723531 eV Total energy + Delta-G solvation = -3754.748034 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -47.22281 -40.43470 -38.75622 -37.33714 -34.51928 -33.52199 -33.34523 -30.56003 -30.34262 -28.15259 -27.92717 -26.35358 -25.76206 -25.17100 -22.04181 -21.60085 -20.74676 -20.03734 -17.67577 -17.49142 -16.92169 -16.59937 -16.45149 -15.90538 -15.78407 -14.77311 -14.49639 -14.29916 -14.03627 -13.83732 -13.68289 -13.40136 -13.09470 -13.04354 -12.91434 -12.70700 -12.29150 -12.10334 -12.05501 -11.86152 -11.75609 -11.68045 -11.59331 -11.40577 -11.03776 -10.78906 -10.64670 -10.52622 -9.95034 -9.70798 -9.21019 -9.02488 -8.59764 -7.98355 -7.80436 -7.00195 -6.58467 -4.57003 1.33918 1.41599 2.52144 2.59402 3.02350 3.16039 3.17810 3.26460 3.67470 3.91119 3.98048 4.43896 4.72360 4.80986 4.94769 4.96510 5.10570 5.25031 5.28557 5.32159 5.49292 5.64498 5.69197 5.76226 5.79856 5.81931 5.83268 5.90063 6.00003 6.25615 6.30659 6.39172 6.41118 6.45048 6.61135 6.71442 6.76275 6.92467 7.08326 7.29625 7.34718 7.46099 7.60724 7.82906 8.13566 8.29746 8.35249 8.60700 8.69972 10.01912 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018221 B = 0.004009 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.306104 B = 6983.310635 C = 7407.532127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.126 3.874 4 C -0.156 4.156 5 C -0.043 4.043 6 C -0.113 4.113 7 C 0.126 3.874 8 N -0.709 5.709 9 C 0.241 3.759 10 C -0.271 4.271 11 C -0.079 4.079 12 C -0.046 4.046 13 F -0.161 7.161 14 C 0.099 3.901 15 C -0.430 4.430 16 H 0.095 0.905 17 C 0.080 3.920 18 N -0.806 5.806 19 Si 0.927 3.073 20 H -0.273 1.273 21 H -0.297 1.297 22 H -0.241 1.241 23 C -0.292 4.292 24 C -0.040 4.040 25 C -0.112 4.112 26 C -0.211 4.211 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.097 0.903 30 H 0.128 0.872 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.398 0.602 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.287 0.713 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.675 -16.143 6.570 19.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.081 3.919 4 C -0.175 4.175 5 C -0.045 4.045 6 C -0.170 4.170 7 C 0.033 3.967 8 N -0.340 5.340 9 C 0.143 3.857 10 C -0.294 4.294 11 C -0.099 4.099 12 C -0.067 4.067 13 F -0.141 7.141 14 C 0.094 3.906 15 C -0.458 4.458 16 H 0.113 0.887 17 C -0.139 4.139 18 N -0.430 5.430 19 Si 0.756 3.244 20 H -0.200 1.200 21 H -0.226 1.226 22 H -0.164 1.164 23 C -0.315 4.315 24 C -0.042 4.042 25 C -0.169 4.169 26 C -0.230 4.230 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.115 0.885 30 H 0.146 0.854 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.235 0.765 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.097 0.903 38 H 0.125 0.875 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.566 -16.143 6.531 19.407 hybrid contribution -0.579 0.276 0.720 0.965 sum -9.145 -15.867 7.251 19.698 Atomic orbital electron populations 1.23015 0.78685 1.03599 1.01382 1.86064 1.21158 1.27132 1.89022 1.18922 0.92168 0.83860 0.96927 1.20104 0.91107 0.97721 1.08592 1.20078 0.96550 0.91544 0.96293 1.20743 0.90347 1.03658 1.02214 1.17017 0.89535 0.85451 1.04704 1.41755 1.67070 1.18454 1.06689 1.17411 0.93330 0.90400 0.84560 1.19707 1.18812 1.00606 0.90225 1.20354 0.99252 0.92956 0.97320 1.17605 1.14814 0.93290 0.80983 1.91286 1.94093 1.82730 1.45950 1.17405 0.90066 0.93566 0.89523 1.19476 1.27534 0.94789 1.04045 0.88697 1.26224 0.95409 0.94197 0.98074 1.69654 1.34542 1.09338 1.29460 0.86145 0.81801 0.76931 0.79555 1.19985 1.22581 1.16387 1.20239 1.19401 0.94574 0.97327 1.20082 0.93572 0.94750 0.95798 1.20729 0.98400 0.94817 1.02949 1.20922 0.99651 0.91443 1.11005 0.92793 0.92655 0.88494 0.85373 0.91292 0.91680 0.90060 0.76537 0.88102 0.87752 0.90254 0.87499 0.90548 0.92116 0.90924 0.85634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.75 10.50 -19.71 -0.21 -3.96 16 3 C 0.13 1.63 6.69 -39.23 -0.26 1.37 16 4 C -0.16 -2.05 9.63 -39.46 -0.38 -2.43 16 5 C -0.04 -0.60 5.90 -104.43 -0.62 -1.22 16 6 C -0.11 -1.44 9.77 36.01 0.35 -1.09 16 7 C 0.13 1.93 4.29 -83.68 -0.36 1.57 16 8 N -0.71 -11.90 3.33 -8.41 -0.03 -11.93 16 9 C 0.24 4.88 6.30 -83.80 -0.53 4.35 16 10 C -0.27 -5.53 9.32 -39.09 -0.36 -5.89 16 11 C -0.08 -1.71 10.00 -39.62 -0.40 -2.10 16 12 C -0.05 -1.13 7.31 -38.61 -0.28 -1.41 16 13 F -0.16 -4.06 16.74 2.25 0.04 -4.03 16 14 C 0.10 2.52 5.25 -106.78 -0.56 1.96 16 15 C -0.43 -11.81 9.34 -37.79 -0.35 -12.16 16 16 H 0.10 2.80 7.94 -52.48 -0.42 2.38 16 17 C 0.08 2.09 5.49 -17.34 -0.10 1.99 16 18 N -0.81 -21.42 13.93 55.55 0.77 -20.65 16 19 Si 0.93 20.54 24.31 -169.99 -4.13 16.40 16 20 H -0.27 -5.71 6.54 56.52 0.37 -5.34 16 21 H -0.30 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.24 -5.41 6.59 56.52 0.37 -5.04 16 23 C -0.29 -6.70 6.81 -38.70 -0.26 -6.97 16 24 C -0.04 -0.57 5.90 -104.43 -0.62 -1.19 16 25 C -0.11 -1.54 9.77 36.01 0.35 -1.19 16 26 C -0.21 -2.68 8.70 -39.46 -0.34 -3.02 16 27 H 0.05 0.37 7.66 -51.92 -0.40 -0.03 16 28 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 33 H 0.08 1.21 7.21 -51.93 -0.37 0.84 16 34 H 0.40 6.21 8.84 -40.82 -0.36 5.85 16 35 H 0.10 1.95 6.99 -52.49 -0.37 1.59 16 36 H 0.10 2.01 8.06 -52.48 -0.42 1.58 16 37 H 0.29 6.87 8.30 -40.82 -0.34 6.54 16 38 H 0.11 2.42 3.66 -52.48 -0.19 2.23 16 39 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 41 H 0.07 1.08 7.39 -51.93 -0.38 0.70 16 42 H 0.13 1.31 6.29 -52.49 -0.33 0.98 16 LS Contribution 347.97 15.07 5.24 5.24 Total: -1.00 -28.69 347.97 -7.41 -36.10 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -5.37 Total: 9.04 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: -3.73 Total: -26.22 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.75 Total: -32.58 kcal Atomic # 8 Polarization: -3.75 SS G_CDS: -0.21 Total: -3.96 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.04 Total: -4.03 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.13 Total: 16.40 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.69 -7.41 -36.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250037753.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.635 kcal (2) G-P(sol) polarization free energy of solvation -28.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds