Wall clock time and date at job start Tue Mar 31 2020 11:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35992 * 116.99850 * 2 1 4 4 C 1.38717 * 119.97495 * 180.02562 * 3 2 1 5 5 C 1.38097 * 120.01750 * 179.97438 * 4 3 2 6 6 C 1.50700 * 120.00755 * 180.02562 * 5 4 3 7 7 C 1.38885 * 119.98027 * 0.02903 * 5 4 3 8 8 N 1.39938 * 120.02209 * 180.02562 * 7 5 4 9 9 C 1.39780 * 120.00636 * 95.02609 * 8 7 5 10 10 C 1.39438 * 119.91749 * 353.25308 * 9 8 7 11 11 C 1.38353 * 120.46282 * 180.22734 * 10 9 8 12 12 C 1.38012 * 120.29591 * 359.49030 * 11 10 9 13 13 F 1.35095 * 120.09324 * 180.22621 * 12 11 10 14 14 C 1.41030 * 119.81683 * 0.50670 * 12 11 10 15 15 C 1.41294 * 120.22133 * 179.76765 * 14 12 11 16 16 H 1.08007 * 120.00126 * 332.26641 * 15 14 12 17 17 C 1.39913 * 119.99813 * 152.26073 * 15 14 12 18 18 N 1.30865 * 119.99715 * 169.88634 * 17 15 14 19 19 Si 1.86790 * 120.00169 * 349.89025 * 17 15 14 20 20 H 1.48498 * 109.47254 * 88.98239 * 19 17 15 21 21 H 1.48505 * 109.47165 * 208.98396 * 19 17 15 22 22 H 1.48499 * 109.47044 * 328.98306 * 19 17 15 23 23 C 1.38190 * 119.91963 * 173.22792 * 9 8 7 24 24 C 1.38884 * 119.95903 * 0.26759 * 7 5 4 25 25 C 1.50701 * 120.01214 * 179.70434 * 24 7 5 26 26 C 1.38099 * 119.97927 * 359.40944 * 24 7 5 27 27 H 1.09007 * 109.46461 * 299.99143 * 1 2 3 28 28 H 1.08990 * 109.47192 * 59.99186 * 1 2 3 29 29 H 1.08994 * 109.47187 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.98994 * 0.02562 * 4 3 2 31 31 H 1.09000 * 109.47017 * 269.97847 * 6 5 4 32 32 H 1.08997 * 109.46939 * 29.98079 * 6 5 4 33 33 H 1.08998 * 109.46895 * 149.98255 * 6 5 4 34 34 H 0.97007 * 119.99300 * 275.03245 * 8 7 5 35 35 H 1.08001 * 119.76360 * 359.95307 * 10 9 8 36 36 H 1.08008 * 119.85198 * 179.74327 * 11 10 9 37 37 H 0.96994 * 119.99685 * 180.02562 * 18 17 15 38 38 H 1.08003 * 120.14780 * 0.02562 * 23 9 8 39 39 H 1.09001 * 109.47068 * 92.08223 * 25 24 7 40 40 H 1.09001 * 109.46925 * 212.07922 * 25 24 7 41 41 H 1.08997 * 109.47045 * 332.08538 * 25 24 7 42 42 H 1.08000 * 119.99358 * 180.31744 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4317 1.2837 -0.0005 5 6 4.0596 2.5137 -0.0011 6 6 5.5645 2.5917 -0.0022 7 6 3.3036 3.6788 -0.0005 8 7 3.9389 4.9257 -0.0015 9 6 4.1603 5.5964 -1.2078 10 6 3.8770 4.9635 -2.4176 11 6 4.0963 5.6151 -3.6182 12 6 4.5886 6.9043 -3.6309 13 9 4.7969 7.5383 -4.8055 14 6 4.8793 7.5559 -2.4145 15 6 5.3883 8.8740 -2.4177 16 1 5.9650 9.2282 -3.2594 17 6 5.1453 9.7204 -1.3304 18 7 5.7745 10.8641 -1.2381 19 14 3.9227 9.2179 -0.0106 20 1 4.6232 8.4398 1.0425 21 1 3.3172 10.4327 0.5917 22 1 2.8558 8.3816 -0.6168 23 6 4.6588 6.8852 -1.1984 24 6 1.9167 3.6057 0.0063 25 6 1.0952 4.8691 0.0137 26 6 1.2905 2.3748 0.0001 27 1 -0.3632 0.5138 0.8902 28 1 -0.3633 0.5139 -0.8898 29 1 -0.3633 -1.0276 0.0005 30 1 4.0194 0.3776 -0.0014 31 1 5.9281 2.6110 1.0251 32 1 5.9730 1.7216 -0.5160 33 1 5.8809 3.4991 -0.5166 34 1 4.2257 5.3245 0.8349 35 1 3.4879 3.9560 -2.4174 36 1 3.8773 5.1140 -4.5496 37 1 5.6063 11.4507 -0.4842 38 1 4.8781 7.3751 -0.2612 39 1 0.8607 5.1560 -1.0114 40 1 0.1699 4.6976 0.5637 41 1 1.6609 5.6674 0.4940 42 1 0.2120 2.3177 0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250037753.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:34 Heat of formation + Delta-G solvation = -53.910128 kcal Electronic energy + Delta-G solvation = -26066.129797 eV Core-core repulsion = 22310.723531 eV Total energy + Delta-G solvation = -3755.406265 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.15165 -41.47994 -40.03676 -38.71396 -36.08530 -35.06908 -34.53505 -32.42064 -31.49021 -29.56007 -28.73756 -27.37743 -27.12201 -26.79922 -23.82162 -22.84697 -21.76964 -21.58775 -19.45498 -18.54333 -18.39002 -18.10452 -17.56035 -17.46850 -16.67315 -16.50885 -16.22487 -15.98356 -15.36564 -15.15347 -14.88311 -14.64759 -14.49681 -14.08597 -14.04766 -13.96805 -13.86213 -13.58508 -13.48409 -13.29367 -12.99308 -12.85601 -12.75398 -12.66161 -12.51849 -12.44474 -11.86837 -11.81897 -11.57858 -11.52388 -10.94431 -10.67150 -9.65789 -9.59912 -9.02033 -8.93464 -8.21603 -6.59571 0.33207 0.35382 0.71219 0.80146 1.22531 1.41035 1.49802 2.09886 2.36266 2.52754 2.59635 2.73401 3.38426 3.78105 3.84728 4.00684 4.13503 4.14616 4.32896 4.39219 4.43157 4.49121 4.54224 4.64316 4.65529 4.66976 4.74415 4.76709 4.80837 4.84249 4.90650 5.04969 5.11531 5.22059 5.31921 5.37288 5.42896 5.57723 5.63743 5.69620 5.72289 5.76291 6.04311 6.17280 6.42986 6.50463 6.69328 6.81312 6.96502 8.15077 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018221 B = 0.004009 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.306104 B = 6983.310635 C = 7407.532127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.129 3.871 4 C -0.162 4.162 5 C -0.044 4.044 6 C -0.111 4.111 7 C 0.095 3.905 8 N -0.695 5.695 9 C 0.257 3.743 10 C -0.252 4.252 11 C -0.069 4.069 12 C -0.085 4.085 13 F -0.174 7.174 14 C 0.086 3.914 15 C -0.473 4.473 16 H 0.049 0.951 17 C 0.042 3.958 18 N -0.850 5.850 19 Si 0.984 3.016 20 H -0.249 1.249 21 H -0.286 1.286 22 H -0.246 1.246 23 C -0.297 4.297 24 C -0.046 4.046 25 C -0.112 4.112 26 C -0.209 4.209 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.120 0.880 30 H 0.143 0.857 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.405 0.595 35 H 0.122 0.878 36 H 0.132 0.868 37 H 0.296 0.704 38 H 0.111 0.889 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.057 0.943 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.058 -19.858 8.483 24.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.084 3.916 4 C -0.181 4.181 5 C -0.046 4.046 6 C -0.168 4.168 7 C 0.003 3.997 8 N -0.323 5.323 9 C 0.156 3.844 10 C -0.274 4.274 11 C -0.089 4.089 12 C -0.106 4.106 13 F -0.154 7.154 14 C 0.082 3.918 15 C -0.503 4.503 16 H 0.067 0.933 17 C -0.172 4.172 18 N -0.476 5.476 19 Si 0.808 3.192 20 H -0.175 1.175 21 H -0.214 1.214 22 H -0.169 1.169 23 C -0.321 4.321 24 C -0.048 4.048 25 C -0.169 4.169 26 C -0.228 4.228 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.138 0.862 30 H 0.161 0.839 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.242 0.758 35 H 0.140 0.860 36 H 0.150 0.850 37 H 0.107 0.893 38 H 0.128 0.872 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.076 0.924 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.951 -19.894 8.468 24.236 hybrid contribution 0.058 1.084 0.104 1.090 sum -10.892 -18.810 8.572 23.365 Atomic orbital electron populations 1.23340 0.76551 1.05550 1.02209 1.86067 1.23365 1.26463 1.88599 1.19070 0.92333 0.84499 0.95726 1.20295 0.91660 0.97866 1.08294 1.20150 0.96973 0.91469 0.96038 1.20738 0.89864 1.03108 1.03044 1.17195 0.90174 0.84792 1.07554 1.41665 1.66178 1.18829 1.05644 1.17403 0.91345 0.89479 0.86152 1.19980 1.16705 1.01047 0.89717 1.20647 0.97447 0.91659 0.99099 1.17960 1.17266 0.94811 0.80534 1.91240 1.94437 1.83218 1.46466 1.17551 0.90200 0.93032 0.91065 1.19382 1.30145 0.96779 1.03975 0.93257 1.26983 0.96668 0.93860 0.99735 1.69690 1.36367 1.10559 1.30942 0.85292 0.79378 0.77180 0.77397 1.17497 1.21351 1.16947 1.20277 1.19703 0.95625 0.96479 1.20170 0.93165 0.95575 0.95907 1.20734 0.99437 0.94196 1.02519 1.21127 1.00922 0.90629 1.10100 0.91681 0.92008 0.86206 0.83935 0.89871 0.90138 0.92459 0.75784 0.86029 0.85017 0.89330 0.87162 0.91620 0.89434 0.92350 0.83270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -6.48 10.50 -93.46 -0.98 -7.46 16 3 C 0.13 2.85 6.69 22.50 0.15 3.01 16 4 C -0.16 -3.69 9.63 22.35 0.22 -3.47 16 5 C -0.04 -1.11 5.90 -19.74 -0.12 -1.23 16 6 C -0.11 -2.53 9.77 71.24 0.70 -1.84 16 7 C 0.10 2.63 4.29 38.16 0.16 2.79 16 8 N -0.69 -21.60 3.33 -180.51 -0.60 -22.20 16 9 C 0.26 9.94 6.30 38.15 0.24 10.18 16 10 C -0.25 -9.66 9.32 22.59 0.21 -9.45 16 11 C -0.07 -2.89 10.00 22.24 0.22 -2.66 16 12 C -0.08 -4.25 7.31 22.90 0.17 -4.09 16 13 F -0.17 -9.18 16.74 44.97 0.75 -8.43 16 14 C 0.09 4.50 5.25 -21.26 -0.11 4.39 16 15 C -0.47 -27.72 9.34 23.43 0.22 -27.50 16 16 H 0.05 3.20 7.94 -2.91 -0.02 3.18 16 17 C 0.04 2.28 5.49 85.24 0.47 2.75 16 18 N -0.85 -47.39 13.93 21.82 0.30 -47.08 16 19 Si 0.98 42.48 24.31 68.60 1.67 44.15 16 20 H -0.25 -9.73 6.54 99.48 0.65 -9.08 16 21 H -0.29 -11.70 7.11 99.48 0.71 -11.00 16 22 H -0.25 -10.71 6.59 99.48 0.66 -10.06 16 23 C -0.30 -13.52 6.81 22.84 0.16 -13.36 16 24 C -0.05 -1.17 5.90 -19.74 -0.12 -1.29 16 25 C -0.11 -2.74 9.77 71.24 0.70 -2.04 16 26 C -0.21 -4.46 8.70 22.35 0.19 -4.26 16 27 H 0.06 0.61 7.66 -2.38 -0.02 0.59 16 28 H 0.06 0.64 7.66 -2.39 -0.02 0.62 16 29 H 0.12 0.80 8.14 -2.39 -0.02 0.79 16 30 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 1.56 8.08 -2.39 -0.02 1.55 16 33 H 0.06 1.59 7.21 -2.39 -0.02 1.57 16 34 H 0.41 11.62 8.84 -92.70 -0.82 10.80 16 35 H 0.12 4.25 6.99 -2.91 -0.02 4.23 16 36 H 0.13 4.74 8.06 -2.91 -0.02 4.71 16 37 H 0.30 14.71 8.30 -92.71 -0.77 13.94 16 38 H 0.11 4.90 3.66 -2.91 -0.01 4.89 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.09 1.62 8.10 -2.39 -0.02 1.60 16 41 H 0.06 1.58 7.39 -2.39 -0.02 1.56 16 42 H 0.15 2.40 6.29 -2.91 -0.02 2.38 16 Total: -1.00 -65.26 347.97 5.85 -59.42 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: 0.14 Total: 28.37 kcal Atomic # 6 Polarization: -51.33 SS G_CDS: 4.57 Total: -46.77 kcal Atomic # 7 Polarization: -68.99 SS G_CDS: -0.30 Total: -69.29 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -0.98 Total: -7.46 kcal Atomic # 9 Polarization: -9.18 SS G_CDS: 0.75 Total: -8.43 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 1.67 Total: 44.15 kcal Total: -65.26 5.85 -59.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250037753.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.508 kcal (2) G-P(sol) polarization free energy of solvation -65.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds