Wall clock time and date at job start Tue Mar 31 2020 10:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99587 * 2 1 4 4 H 1.48504 * 109.47104 * 239.99899 * 3 2 1 5 5 H 1.48496 * 109.47638 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47155 * 120.00052 * 3 2 1 7 7 C 1.37876 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99748 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00116 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47047 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47077 * 180.02562 * 10 9 7 12 12 N 1.46906 * 109.47020 * 179.97438 * 11 10 9 13 13 C 1.46902 * 110.99573 * 179.97438 * 12 11 10 14 14 C 1.53008 * 109.46622 * 179.97438 * 13 12 11 15 15 H 1.09003 * 109.47223 * 304.99930 * 14 13 12 16 16 O 1.42900 * 109.47139 * 65.00304 * 14 13 12 17 17 C 1.53008 * 109.46744 * 185.00131 * 14 13 12 18 18 O 1.42894 * 109.46781 * 175.00274 * 17 14 13 19 19 C 1.35996 * 116.99961 * 180.02562 * 18 17 14 20 20 C 1.38640 * 120.03995 * 359.71914 * 19 18 17 21 21 C 1.38183 * 119.99444 * 179.72243 * 20 19 18 22 22 C 1.38450 * 120.07290 * 0.55855 * 21 20 19 23 23 F 1.35104 * 119.96451 * 179.74613 * 22 21 20 24 24 C 1.38443 * 120.07478 * 359.71983 * 22 21 20 25 25 C 1.38339 * 120.00425 * 359.97438 * 24 22 21 26 26 F 1.35095 * 120.03547 * 179.97438 * 25 24 22 27 27 H 0.96998 * 120.00461 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.46938 * 60.00224 * 9 7 2 29 29 H 1.09000 * 109.47099 * 300.00095 * 9 7 2 30 30 H 1.08995 * 109.47786 * 59.99623 * 10 9 7 31 31 H 1.09008 * 109.46885 * 300.00116 * 10 9 7 32 32 H 1.09002 * 109.47142 * 60.00048 * 11 10 9 33 33 H 1.09000 * 109.46991 * 299.99792 * 11 10 9 34 34 H 1.00896 * 111.00309 * 56.04370 * 12 11 10 35 35 H 1.08990 * 109.47358 * 299.99539 * 13 12 11 36 36 H 1.09004 * 109.47457 * 60.00221 * 13 12 11 37 37 H 0.96697 * 114.00040 * 59.99197 * 16 14 13 38 38 H 1.09005 * 109.46614 * 294.99810 * 17 14 13 39 39 H 1.08993 * 109.46898 * 55.00161 * 17 14 13 40 40 H 1.08007 * 119.99601 * 359.97438 * 20 19 18 41 41 H 1.08010 * 119.96306 * 180.25444 * 21 20 19 42 42 H 1.08000 * 119.99967 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4804 -4.9870 0.0012 12 7 2.4351 -6.1036 0.0018 13 6 1.7348 -7.3949 0.0018 14 6 2.7599 -8.5309 0.0018 15 1 3.4409 -8.4058 -0.8400 16 8 3.5017 -8.5031 1.2229 17 6 2.0345 -9.8722 -0.1239 18 8 2.9949 -10.9238 -0.2410 19 6 2.5127 -12.1896 -0.3626 20 6 1.1446 -12.4140 -0.3632 21 6 0.6556 -13.7000 -0.4926 22 6 1.5307 -14.7664 -0.6102 23 9 1.0502 -16.0233 -0.7315 24 6 2.8975 -14.5463 -0.6042 25 6 3.3904 -13.2596 -0.4811 26 9 4.7240 -13.0441 -0.4746 27 1 -0.4851 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.8714 -3.6039 0.8922 31 1 2.8727 -3.6046 -0.8878 32 1 0.8548 -5.0449 -0.8895 33 1 0.8528 -5.0446 0.8905 34 1 3.0695 -6.0366 0.7836 35 1 1.1097 -7.4692 0.8915 36 1 1.1102 -7.4696 -0.8884 37 1 2.9583 -8.6090 2.0157 38 1 1.4207 -10.0377 0.7615 39 1 1.3993 -9.8601 -1.0095 40 1 0.4611 -11.5834 -0.2666 41 1 -0.4104 -13.8738 -0.4972 42 1 3.5790 -15.3790 -0.6964 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250878393.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:15 Heat of formation + Delta-G solvation = -166.826318 kcal Electronic energy + Delta-G solvation = -24556.120049 eV Core-core repulsion = 20365.048146 eV Total energy + Delta-G solvation = -4191.071903 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.143 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.41391 -49.28967 -40.61761 -38.59328 -37.36253 -35.77656 -33.47774 -31.81362 -31.49297 -30.68007 -29.42816 -26.89164 -25.02330 -23.62279 -22.95755 -22.14407 -21.90508 -20.13902 -19.03164 -18.33630 -17.94146 -17.17772 -16.76566 -16.44117 -16.32415 -16.18192 -15.82145 -15.52271 -15.29305 -14.99249 -14.89106 -14.52881 -14.48394 -14.11832 -13.91219 -13.31927 -12.99560 -12.81449 -12.76134 -12.46543 -12.12299 -11.97775 -11.67086 -11.47139 -11.41996 -11.13883 -10.82836 -10.64550 -10.59608 -10.36682 -9.72232 -9.69552 -9.35535 -9.08209 -8.66671 -8.35092 -8.30505 -6.00194 -4.02328 0.35658 0.47191 2.38552 2.77664 3.34003 3.37357 3.37959 3.41005 3.78166 3.90340 4.00683 4.12123 4.24939 4.39780 4.46473 4.51308 4.62614 4.71497 4.79333 4.90717 5.02729 5.17700 5.30999 5.35631 5.38066 5.41161 5.43846 5.68296 5.72272 5.86703 6.00549 6.25644 6.65823 6.68044 6.71647 7.10727 7.21349 7.32782 7.54035 7.66910 7.81273 7.99771 8.43174 9.04573 9.61745 11.11184 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.039567 B = 0.001619 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.487661 B =17294.616909 C =17836.265251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.108 4.108 11 C 0.059 3.941 12 N -0.686 5.686 13 C 0.032 3.968 14 C 0.111 3.889 15 H 0.121 0.879 16 O -0.547 6.547 17 C 0.025 3.975 18 O -0.290 6.290 19 C 0.093 3.907 20 C -0.156 4.156 21 C -0.120 4.120 22 C 0.088 3.912 23 F -0.133 7.133 24 C -0.153 4.153 25 C 0.100 3.900 26 F -0.121 7.121 27 H 0.261 0.739 28 H 0.016 0.984 29 H 0.013 0.987 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.025 0.975 34 H 0.346 0.654 35 H 0.033 0.967 36 H 0.082 0.918 37 H 0.371 0.629 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.606 -31.701 0.306 31.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.069 4.069 12 N -0.318 5.318 13 C -0.099 4.099 14 C 0.052 3.948 15 H 0.138 0.862 16 O -0.352 6.352 17 C -0.051 4.051 18 O -0.203 6.203 19 C 0.046 3.954 20 C -0.175 4.175 21 C -0.139 4.139 22 C 0.069 3.931 23 F -0.111 7.111 24 C -0.172 4.172 25 C 0.080 3.920 26 F -0.099 7.099 27 H 0.070 0.930 28 H 0.034 0.966 29 H 0.032 0.968 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.165 0.835 35 H 0.051 0.949 36 H 0.101 0.899 37 H 0.218 0.782 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.167 0.833 41 H 0.164 0.836 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.271 -31.439 -0.788 31.475 hybrid contribution -0.619 0.620 1.215 1.498 sum 0.652 -30.819 0.427 30.829 Atomic orbital electron populations 1.69951 1.06067 1.26690 1.50942 1.25028 0.94861 0.99283 0.95334 0.86641 0.79561 0.83045 0.78657 1.20206 1.21318 1.20251 1.21224 0.93073 0.91047 1.50504 0.92666 1.19061 0.93994 0.91389 0.97088 1.21632 0.99226 0.92809 1.00920 1.22158 0.94044 0.90788 0.99898 1.60461 1.20157 1.00500 1.50661 1.22485 0.95309 0.90533 1.01531 1.22044 0.94431 0.89031 0.89334 0.86159 1.86708 1.37728 1.95610 1.15131 1.23759 0.91860 0.87065 1.02395 1.86258 1.35186 1.11725 1.87159 1.19075 0.92028 0.85137 0.99142 1.21046 0.93255 0.98244 1.04975 1.21030 1.00808 0.91046 1.01016 1.17152 0.91158 0.79867 1.04963 1.91535 1.88429 1.37627 1.93545 1.20922 0.95193 0.96422 1.04703 1.16550 0.77560 0.91113 1.06765 1.91564 1.29141 1.95332 1.93886 0.92985 0.96579 0.96830 0.93521 0.92442 0.91442 0.95716 0.83487 0.94894 0.89921 0.78190 0.91224 0.90367 0.83315 0.83584 0.82696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.95 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 10 C -0.11 -2.21 5.41 -26.73 -0.14 -2.35 16 11 C 0.06 0.98 5.69 -3.82 -0.02 0.95 16 12 N -0.69 -9.36 6.50 -113.77 -0.74 -10.10 16 13 C 0.03 0.31 5.36 -3.82 -0.02 0.29 16 14 C 0.11 1.01 3.49 -26.72 -0.09 0.91 16 15 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 16 O -0.55 -5.53 12.82 -40.09 -0.51 -6.05 16 17 C 0.03 0.17 4.37 37.16 0.16 0.34 16 18 O -0.29 -2.84 9.97 -24.58 -0.25 -3.08 16 19 C 0.09 0.80 6.69 -39.19 -0.26 0.54 16 20 C -0.16 -0.95 9.04 -39.45 -0.36 -1.31 16 21 C -0.12 -0.69 10.02 -39.52 -0.40 -1.09 16 22 C 0.09 0.62 7.30 -39.43 -0.29 0.33 16 23 F -0.13 -1.02 17.27 2.25 0.04 -0.98 16 24 C -0.15 -1.10 10.00 -39.47 -0.39 -1.50 16 25 C 0.10 0.90 7.31 -39.30 -0.29 0.62 16 26 F -0.12 -1.30 17.11 2.25 0.04 -1.27 16 27 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 1.21 8.14 -51.92 -0.42 0.78 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.35 4.70 8.29 -39.29 -0.33 4.37 16 35 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.37 2.39 9.05 45.56 0.41 2.80 16 38 H 0.07 0.35 7.65 -51.93 -0.40 -0.05 16 39 H 0.08 0.42 7.67 -51.93 -0.40 0.02 16 40 H 0.15 0.57 6.30 -52.48 -0.33 0.24 16 41 H 0.15 0.53 8.06 -52.48 -0.42 0.10 16 42 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 366.42 15.07 5.52 5.52 Total: -1.00 -32.73 366.42 -8.07 -40.79 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -5.23 Total: 0.12 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -2.65 Total: -15.47 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.00 Total: -36.32 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -0.76 Total: -9.13 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.08 Total: -2.25 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.73 -8.07 -40.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250878393.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.031 kcal (2) G-P(sol) polarization free energy of solvation -32.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds