Wall clock time and date at job start Tue Mar 31 2020 10:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99587 * 2 1 4 4 H 1.48504 * 109.47104 * 239.99899 * 3 2 1 5 5 H 1.48496 * 109.47638 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47155 * 120.00052 * 3 2 1 7 7 C 1.37876 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99748 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00116 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47047 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47077 * 180.02562 * 10 9 7 12 12 N 1.46906 * 109.47020 * 179.97438 * 11 10 9 13 13 C 1.46902 * 110.99573 * 179.97438 * 12 11 10 14 14 C 1.53008 * 109.46622 * 179.97438 * 13 12 11 15 15 H 1.09003 * 109.47223 * 304.99930 * 14 13 12 16 16 O 1.42900 * 109.47139 * 65.00304 * 14 13 12 17 17 C 1.53008 * 109.46744 * 185.00131 * 14 13 12 18 18 O 1.42894 * 109.46781 * 175.00274 * 17 14 13 19 19 C 1.35996 * 116.99961 * 180.02562 * 18 17 14 20 20 C 1.38640 * 120.03995 * 359.71914 * 19 18 17 21 21 C 1.38183 * 119.99444 * 179.72243 * 20 19 18 22 22 C 1.38450 * 120.07290 * 0.55855 * 21 20 19 23 23 F 1.35104 * 119.96451 * 179.74613 * 22 21 20 24 24 C 1.38443 * 120.07478 * 359.71983 * 22 21 20 25 25 C 1.38339 * 120.00425 * 359.97438 * 24 22 21 26 26 F 1.35095 * 120.03547 * 179.97438 * 25 24 22 27 27 H 0.96998 * 120.00461 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.46938 * 60.00224 * 9 7 2 29 29 H 1.09000 * 109.47099 * 300.00095 * 9 7 2 30 30 H 1.08995 * 109.47786 * 59.99623 * 10 9 7 31 31 H 1.09008 * 109.46885 * 300.00116 * 10 9 7 32 32 H 1.09002 * 109.47142 * 60.00048 * 11 10 9 33 33 H 1.09000 * 109.46991 * 299.99792 * 11 10 9 34 34 H 1.00896 * 111.00309 * 56.04370 * 12 11 10 35 35 H 1.08990 * 109.47358 * 299.99539 * 13 12 11 36 36 H 1.09004 * 109.47457 * 60.00221 * 13 12 11 37 37 H 0.96697 * 114.00040 * 59.99197 * 16 14 13 38 38 H 1.09005 * 109.46614 * 294.99810 * 17 14 13 39 39 H 1.08993 * 109.46898 * 55.00161 * 17 14 13 40 40 H 1.08007 * 119.99601 * 359.97438 * 20 19 18 41 41 H 1.08010 * 119.96306 * 180.25444 * 21 20 19 42 42 H 1.08000 * 119.99967 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4804 -4.9870 0.0012 12 7 2.4351 -6.1036 0.0018 13 6 1.7348 -7.3949 0.0018 14 6 2.7599 -8.5309 0.0018 15 1 3.4409 -8.4058 -0.8400 16 8 3.5017 -8.5031 1.2229 17 6 2.0345 -9.8722 -0.1239 18 8 2.9949 -10.9238 -0.2410 19 6 2.5127 -12.1896 -0.3626 20 6 1.1446 -12.4140 -0.3632 21 6 0.6556 -13.7000 -0.4926 22 6 1.5307 -14.7664 -0.6102 23 9 1.0502 -16.0233 -0.7315 24 6 2.8975 -14.5463 -0.6042 25 6 3.3904 -13.2596 -0.4811 26 9 4.7240 -13.0441 -0.4746 27 1 -0.4851 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.8714 -3.6039 0.8922 31 1 2.8727 -3.6046 -0.8878 32 1 0.8548 -5.0449 -0.8895 33 1 0.8528 -5.0446 0.8905 34 1 3.0695 -6.0366 0.7836 35 1 1.1097 -7.4692 0.8915 36 1 1.1102 -7.4696 -0.8884 37 1 2.9583 -8.6090 2.0157 38 1 1.4207 -10.0377 0.7615 39 1 1.3993 -9.8601 -1.0095 40 1 0.4611 -11.5834 -0.2666 41 1 -0.4104 -13.8738 -0.4972 42 1 3.5790 -15.3790 -0.6964 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250878393.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:15 Heat of formation + Delta-G solvation = -189.795815 kcal Electronic energy + Delta-G solvation = -24557.116081 eV Core-core repulsion = 20365.048146 eV Total energy + Delta-G solvation = -4192.067935 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.143 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.99619 -49.96135 -41.19140 -39.29324 -38.07719 -36.99478 -35.29647 -33.25999 -32.05546 -31.62496 -30.20087 -28.32878 -26.20421 -24.45349 -23.82263 -23.28138 -22.67109 -21.78775 -19.61088 -18.94111 -18.53840 -18.47251 -17.80725 -17.48614 -17.12864 -16.81240 -16.61234 -16.52785 -16.31249 -15.90345 -15.78147 -15.53661 -15.47719 -15.06554 -14.78946 -14.40084 -14.31294 -13.71935 -13.56807 -13.44457 -13.33104 -13.12426 -12.95548 -12.61071 -12.49545 -12.47144 -12.26189 -11.94597 -11.82231 -11.52345 -11.44586 -11.26702 -10.93436 -10.54367 -10.21045 -9.37697 -9.23723 -8.19962 -6.30722 -0.15220 -0.07075 1.40560 1.43413 1.51384 1.81381 2.26020 2.41446 2.82128 3.13074 3.15188 3.27964 3.43725 3.52264 3.73548 3.91567 3.91784 3.97432 4.01476 4.25517 4.27153 4.29295 4.39665 4.43745 4.68261 4.71271 4.74027 4.78008 4.92210 4.95089 4.97306 5.03754 5.11507 5.24680 5.49612 5.52444 5.75758 5.86395 6.02913 6.16025 6.27982 6.45120 6.79843 6.85849 7.38385 8.91486 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.039567 B = 0.001619 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.487661 B =17294.616909 C =17836.265251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.025 3.975 10 C -0.096 4.096 11 C 0.074 3.926 12 N -0.695 5.695 13 C 0.034 3.966 14 C 0.118 3.882 15 H 0.098 0.902 16 O -0.569 6.569 17 C 0.026 3.974 18 O -0.317 6.317 19 C 0.082 3.918 20 C -0.148 4.148 21 C -0.109 4.109 22 C 0.078 3.922 23 F -0.138 7.138 24 C -0.151 4.151 25 C 0.071 3.929 26 F -0.140 7.140 27 H 0.264 0.736 28 H -0.007 1.007 29 H -0.007 1.007 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.028 0.972 34 H 0.347 0.653 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.387 0.613 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.177 0.823 41 H 0.173 0.827 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.128 -32.253 0.564 32.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.134 4.134 11 C -0.055 4.055 12 N -0.327 5.327 13 C -0.095 4.095 14 C 0.058 3.942 15 H 0.116 0.884 16 O -0.376 6.376 17 C -0.049 4.049 18 O -0.231 6.231 19 C 0.035 3.965 20 C -0.167 4.167 21 C -0.128 4.128 22 C 0.059 3.941 23 F -0.116 7.116 24 C -0.170 4.170 25 C 0.051 3.949 26 F -0.119 7.119 27 H 0.072 0.928 28 H 0.012 0.988 29 H 0.011 0.989 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.165 0.835 35 H 0.071 0.929 36 H 0.111 0.889 37 H 0.236 0.764 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.194 0.806 41 H 0.191 0.809 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 0.538 -32.017 -0.522 32.026 hybrid contribution -0.424 0.737 1.143 1.424 sum 0.113 -31.281 0.620 31.287 Atomic orbital electron populations 1.70076 1.07690 1.27825 1.51616 1.25965 0.95809 1.03291 0.94712 0.85514 0.78300 0.78173 0.79141 1.19321 1.20690 1.19231 1.21690 0.93525 0.92577 1.50651 0.92433 1.18968 0.94408 0.92952 0.94911 1.21394 0.98093 0.93292 1.00585 1.21830 0.93797 0.89832 1.00030 1.60356 1.19986 1.01371 1.50949 1.22539 0.95480 0.88574 1.02920 1.21856 0.93753 0.90167 0.88390 0.88425 1.86668 1.39031 1.95756 1.16167 1.23806 0.91347 0.85181 1.04583 1.86206 1.36773 1.12584 1.87542 1.19270 0.93007 0.84532 0.99682 1.21329 0.92406 0.99226 1.03699 1.21359 1.01984 0.90379 0.99079 1.17318 0.91266 0.80097 1.05455 1.91525 1.88411 1.38037 1.93650 1.21024 0.95788 0.96168 1.04069 1.16869 0.77032 0.92187 1.08857 1.91505 1.30534 1.95511 1.94311 0.92752 0.98822 0.98854 0.93349 0.93155 0.91553 0.95382 0.83458 0.92913 0.88918 0.76410 0.88615 0.88358 0.80555 0.80908 0.81697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.57 13.29 21.45 0.28 -56.28 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.96 44.44 29.54 68.60 2.03 46.47 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.55 -31.46 9.11 25.60 0.23 -31.22 16 8 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 9 C 0.03 1.33 4.97 29.85 0.15 1.48 16 10 C -0.10 -3.92 5.41 30.59 0.17 -3.76 16 11 C 0.07 2.37 5.69 86.30 0.49 2.86 16 12 N -0.69 -18.03 6.50 -513.86 -3.34 -21.37 16 13 C 0.03 0.59 5.36 86.31 0.46 1.06 16 14 C 0.12 1.95 3.49 30.60 0.11 2.06 16 15 H 0.10 2.05 8.14 -2.39 -0.02 2.04 16 16 O -0.57 -10.82 12.82 -144.34 -1.85 -12.67 16 17 C 0.03 0.29 4.37 71.98 0.31 0.61 16 18 O -0.32 -5.86 9.97 -88.86 -0.89 -6.75 16 19 C 0.08 1.30 6.69 22.52 0.15 1.45 16 20 C -0.15 -1.38 9.04 22.35 0.20 -1.18 16 21 C -0.11 -0.95 10.02 22.31 0.22 -0.73 16 22 C 0.08 0.98 7.30 22.37 0.16 1.14 16 23 F -0.14 -1.92 17.27 44.97 0.78 -1.15 16 24 C -0.15 -2.11 10.00 22.34 0.22 -1.89 16 25 C 0.07 1.27 7.31 22.45 0.16 1.43 16 26 F -0.14 -3.17 17.11 44.97 0.77 -2.40 16 27 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 28 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 29 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 32 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.35 9.00 8.29 -89.70 -0.74 8.25 16 35 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.39 4.27 9.05 -74.06 -0.67 3.60 16 38 H 0.10 0.59 7.65 -2.38 -0.02 0.57 16 39 H 0.10 0.71 7.67 -2.39 -0.02 0.70 16 40 H 0.18 0.59 6.30 -2.91 -0.02 0.57 16 41 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 42 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -71.78 366.42 0.93 -70.85 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -0.36 Total: 9.54 kcal Atomic # 6 Polarization: -29.74 SS G_CDS: 3.51 Total: -26.23 kcal Atomic # 7 Polarization: -74.60 SS G_CDS: -3.06 Total: -77.66 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -2.74 Total: -19.42 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 1.55 Total: -3.55 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -71.78 0.93 -70.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250878393.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.948 kcal (2) G-P(sol) polarization free energy of solvation -71.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds