Wall clock time and date at job start Tue Mar 31 2020 10:29:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86798 * 119.99828 * 2 1
4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1
5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1
6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1
7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3
8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1
9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1
10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2
11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7
12 12 C 1.50696 * 109.47242 * 180.02562 * 11 10 9
13 13 C 1.35346 * 126.75136 * 124.70936 * 12 11 10
14 14 N 1.35316 * 106.17696 * 179.85675 * 13 12 11
15 15 C 1.46499 * 125.86879 * 180.18776 * 14 13 12
16 16 C 1.50703 * 109.46927 * 125.29427 * 15 14 13
17 17 C 1.38360 * 119.85010 * 269.72643 * 16 15 14
18 18 C 1.37946 * 120.14853 * 179.72447 * 17 16 15
19 19 C 1.39629 * 119.85035 * 0.56819 * 18 17 16
20 20 C 1.47722 * 120.15048 * 179.67886 * 19 18 17
21 21 O 1.21478 * 119.99965 * 180.02562 * 20 19 18
22 22 O 1.34707 * 120.00332 * 0.02718 * 20 19 18
23 23 C 1.39624 * 119.69920 * 359.70931 * 19 18 17
24 24 C 1.37946 * 119.84773 * 359.97438 * 23 19 18
25 25 N 1.28715 * 108.25962 * 0.41795 * 14 13 12
26 26 N 1.28632 * 110.18138 * 359.73745 * 25 14 13
27 27 H 0.96996 * 120.00505 * 359.97438 * 1 2 3
28 28 H 1.09001 * 109.46665 * 60.00499 * 9 7 2
29 29 H 1.08993 * 109.47304 * 300.00055 * 9 7 2
30 30 H 1.09001 * 109.46801 * 300.00442 * 10 9 7
31 31 H 1.09001 * 109.46998 * 60.00038 * 10 9 7
32 32 H 1.08996 * 109.46952 * 300.00302 * 11 10 9
33 33 H 1.09001 * 109.46832 * 60.00321 * 11 10 9
34 34 H 1.08001 * 126.91466 * 0.02562 * 13 12 11
35 35 H 1.08998 * 109.47121 * 245.29174 * 15 14 13
36 36 H 1.09002 * 109.47710 * 5.29534 * 15 14 13
37 37 H 1.08000 * 119.92473 * 359.97438 * 17 16 15
38 38 H 1.08006 * 120.07775 * 180.27123 * 18 17 16
39 39 H 0.96700 * 117.00333 * 179.97438 * 22 20 19
40 40 H 1.07998 * 120.08011 * 179.97438 * 23 19 18
41 41 H 1.08002 * 119.92652 * 180.02562 * 24 23 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.1028 1.6966 -1.2125
5 1 1.2840 2.7465 0.0006
6 1 3.1029 1.6964 1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0010
9 6 1.2511 -2.4991 -0.0005
10 6 2.2454 -3.6621 -0.0005
11 6 1.4805 -4.9871 -0.0012
12 6 2.4597 -6.1325 -0.0005
13 6 2.5160 -7.1493 0.8909
14 7 3.5433 -7.9380 0.4988
15 6 3.9825 -9.1683 1.1618
16 6 3.9985 -10.2981 0.1646
17 6 2.8685 -11.0766 -0.0123
18 6 2.8745 -12.1087 -0.9276
19 6 4.0283 -12.3745 -1.6677
20 6 4.0443 -13.4826 -2.6445
21 8 5.0497 -13.7117 -3.2866
22 8 2.9441 -14.2390 -2.8232
23 6 5.1669 -11.5886 -1.4800
24 6 5.1451 -10.5555 -0.5661
25 7 4.0714 -7.4188 -0.5539
26 7 3.4482 -6.3410 -0.8775
27 1 -0.4851 0.8400 0.0004
28 1 0.6242 -2.5567 -0.8904
29 1 0.6248 -2.5571 0.8896
30 1 2.8721 -3.6042 -0.8905
31 1 2.8721 -3.6043 0.8895
32 1 0.8535 -5.0450 0.8885
33 1 0.8542 -5.0446 -0.8914
34 1 1.8692 -7.3023 1.7422
35 1 4.9849 -9.0257 1.5654
36 1 3.2953 -9.4094 1.9729
37 1 1.9784 -10.8732 0.5645
38 1 1.9903 -12.7129 -1.0679
39 1 3.0025 -14.9522 -3.4735
40 1 6.0628 -11.7890 -2.0488
41 1 6.0250 -9.9465 -0.4202
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001254098722.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:29:33
Heat of formation + Delta-G solvation = 16.921077 kcal
Electronic energy + Delta-G solvation = -23924.631600 eV
Core-core repulsion = 20192.216768 eV
Total energy + Delta-G solvation = -3732.414832 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-43.14963 -40.92572 -39.41610 -36.61103 -35.65598 -34.46692 -32.57070 -31.96312
-31.62242 -30.44938 -28.04658 -26.96490 -24.45552 -23.69988 -23.32325 -22.05104
-21.51877 -20.81615 -19.82018 -18.67150 -18.03402 -17.34439 -16.84006 -16.15681
-16.11639 -15.80327 -15.42947 -15.03508 -14.82939 -14.45946 -14.13476 -13.97063
-13.69187 -13.66992 -13.24517 -12.95059 -12.47818 -12.26378 -12.07466 -11.84929
-11.67821 -11.62001 -11.34433 -11.15949 -10.83545 -10.74889 -10.46588 -10.43488
-10.01364 -9.62357 -9.57845 -9.56624 -9.32348 -9.08056 -8.75350 -8.27193
-5.92998 -3.94317 -0.01722 0.79589 1.65047 1.86849 2.42520 2.46876
2.78045 3.24826 3.38831 3.42390 3.46002 3.80705 4.01857 4.30377
4.34651 4.51572 4.52993 4.64138 4.67158 4.81609 4.95207 5.07391
5.15524 5.27074 5.41359 5.42765 5.56858 5.62621 5.75654 5.84141
5.94810 6.02451 6.11128 6.20565 6.23876 6.54692 6.58920 6.85042
7.00629 7.24805 7.35563 7.76300 7.91978 8.08176 8.52052 8.68028
9.12605 9.69120 11.18383
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.030646 B = 0.001866 C = 0.001863
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 913.453745 B =15000.891242 C =15025.377095
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.897 5.897
2 C 0.055 3.945
3 Si 0.891 3.109
4 H -0.277 1.277
5 H -0.288 1.288
6 H -0.278 1.278
7 C -0.518 4.518
8 H 0.054 0.946
9 C 0.021 3.979
10 C -0.103 4.103
11 C -0.038 4.038
12 C 0.004 3.996
13 C -0.062 4.062
14 N -0.298 5.298
15 C 0.157 3.843
16 C -0.078 4.078
17 C -0.111 4.111
18 C -0.064 4.064
19 C -0.118 4.118
20 C 0.527 3.473
21 O -0.511 6.511
22 O -0.512 6.512
23 C -0.055 4.055
24 C -0.092 4.092
25 N -0.087 5.087
26 N -0.259 5.259
27 H 0.260 0.740
28 H 0.017 0.983
29 H 0.015 0.985
30 H 0.056 0.944
31 H 0.045 0.955
32 H 0.075 0.925
33 H 0.077 0.923
34 H 0.188 0.812
35 H 0.110 0.890
36 H 0.117 0.883
37 H 0.135 0.865
38 H 0.142 0.858
39 H 0.416 0.584
40 H 0.143 0.857
41 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.340 -31.486 3.144 32.090
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.537 5.537
2 C -0.145 4.145
3 Si 0.719 3.281
4 H -0.202 1.202
5 H -0.214 1.214
6 H -0.203 1.203
7 C -0.556 4.556
8 H 0.072 0.928
9 C -0.016 4.016
10 C -0.141 4.141
11 C -0.077 4.077
12 C -0.134 4.134
13 C -0.211 4.211
14 N -0.093 5.093
15 C 0.035 3.965
16 C -0.079 4.079
17 C -0.129 4.129
18 C -0.082 4.082
19 C -0.120 4.120
20 C 0.371 3.629
21 O -0.400 6.400
22 O -0.324 6.324
23 C -0.073 4.073
24 C -0.111 4.111
25 N -0.066 5.066
26 N -0.126 5.126
27 H 0.069 0.931
28 H 0.035 0.965
29 H 0.034 0.966
30 H 0.075 0.925
31 H 0.063 0.937
32 H 0.093 0.907
33 H 0.095 0.905
34 H 0.205 0.795
35 H 0.128 0.872
36 H 0.135 0.865
37 H 0.153 0.847
38 H 0.160 0.840
39 H 0.275 0.725
40 H 0.160 0.840
41 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges 6.545 -31.262 2.210 32.016
hybrid contribution -0.340 0.414 0.484 0.722
sum 6.204 -30.848 2.694 31.581
Atomic orbital electron populations
1.69949 1.05997 1.26571 1.51175 1.25016 0.94850 0.99173 0.95484
0.86673 0.79583 0.83214 0.78614 1.20234 1.21353 1.20338 1.21244
0.93055 0.91140 1.50151 0.92782 1.19114 0.93996 0.91346 0.97169
1.21577 0.99001 0.92590 1.00891 1.20145 0.94345 0.90587 1.02635
1.22423 0.98871 0.98588 0.93480 1.23408 0.97026 0.95447 1.05229
1.47258 1.22489 1.18985 1.20535 1.20915 1.03901 0.78526 0.93113
1.20029 0.94649 0.95622 0.97560 1.21087 0.97833 0.95240 0.98757
1.21443 0.97253 0.96246 0.93231 1.19131 0.96506 0.97006 0.99338
1.20889 0.80234 0.80969 0.80768 1.90912 1.33619 1.69139 1.46330
1.84545 1.40330 1.45898 1.61587 1.21299 0.97405 0.92694 0.95894
1.21083 0.98433 0.96649 0.94927 1.78275 1.20885 1.06226 1.01250
1.75113 1.06555 1.07788 1.23127 0.93055 0.96474 0.96648 0.92532
0.93657 0.90666 0.90476 0.79458 0.87238 0.86483 0.84731 0.84013
0.72467 0.83960 0.84198
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16
2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16
3 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16
4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16
5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16
7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16
8 H 0.05 1.54 7.74 -52.48 -0.41 1.14 16
9 C 0.02 0.54 4.97 -27.88 -0.14 0.41 16
10 C -0.10 -2.21 5.13 -26.73 -0.14 -2.34 16
11 C -0.04 -0.65 5.79 -27.89 -0.16 -0.81 16
12 C 0.00 0.06 6.50 -82.78 -0.54 -0.48 16
13 C -0.06 -0.73 11.49 -17.05 -0.20 -0.93 16
14 N -0.30 -3.35 3.43 -62.44 -0.21 -3.57 16
15 C 0.16 0.97 6.58 -5.19 -0.03 0.93 16
16 C -0.08 -0.54 5.26 -104.53 -0.55 -1.09 16
17 C -0.11 -0.70 9.68 -39.64 -0.38 -1.09 16
18 C -0.06 -0.43 9.62 -39.17 -0.38 -0.81 16
19 C -0.12 -0.97 5.87 -104.99 -0.62 -1.59 16
20 C 0.53 4.52 8.27 34.61 0.29 4.80 16
21 O -0.51 -5.82 17.13 -19.25 -0.33 -6.15 16
22 O -0.51 -2.87 12.68 -40.51 -0.51 -3.38 16
23 C -0.05 -0.44 9.60 -39.17 -0.38 -0.82 16
24 C -0.09 -0.69 9.68 -39.64 -0.38 -1.08 16
25 N -0.09 -1.34 12.92 60.35 0.78 -0.56 16
26 N -0.26 -4.69 12.40 33.29 0.41 -4.28 16
27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16
29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16
30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16
31 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16
32 H 0.07 1.13 8.12 -51.93 -0.42 0.71 16
33 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16
34 H 0.19 1.42 8.06 -52.49 -0.42 1.00 16
35 H 0.11 0.51 8.08 -51.93 -0.42 0.09 16
36 H 0.12 0.33 8.01 -51.93 -0.42 -0.08 16
37 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16
38 H 0.14 0.74 7.61 -52.48 -0.40 0.34 16
39 H 0.42 0.54 9.11 45.56 0.42 0.96 16
40 H 0.14 1.10 7.65 -52.49 -0.40 0.69 16
41 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16
LS Contribution 365.24 15.07 5.50 5.50
Total: -1.00 -37.81 365.24 -7.23 -45.04
By element:
Atomic # 1 Polarization: 0.13 SS G_CDS: -4.57 Total: -4.44 kcal
Atomic # 6 Polarization: -14.72 SS G_CDS: -4.02 Total: -18.74 kcal
Atomic # 7 Polarization: -36.67 SS G_CDS: 1.71 Total: -34.96 kcal
Atomic # 8 Polarization: -8.69 SS G_CDS: -0.84 Total: -9.54 kcal
Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal
Total LS contribution 5.50 Total: 5.50 kcal
Total: -37.81 -7.23 -45.04 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001254098722.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.958 kcal
(2) G-P(sol) polarization free energy of solvation -37.809 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.150 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.037 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.921 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds