Wall clock time and date at job start Tue Mar 31 2020 10:29:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86798 * 119.99828 * 2 1
4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1
5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1
6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1
7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3
8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1
9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1
10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2
11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7
12 12 C 1.50696 * 109.47242 * 180.02562 * 11 10 9
13 13 C 1.35346 * 126.75136 * 124.70936 * 12 11 10
14 14 N 1.35316 * 106.17696 * 179.85675 * 13 12 11
15 15 C 1.46499 * 125.86879 * 180.18776 * 14 13 12
16 16 C 1.50703 * 109.46927 * 125.29427 * 15 14 13
17 17 C 1.38360 * 119.85010 * 269.72643 * 16 15 14
18 18 C 1.37946 * 120.14853 * 179.72447 * 17 16 15
19 19 C 1.39629 * 119.85035 * 0.56819 * 18 17 16
20 20 C 1.47722 * 120.15048 * 179.67886 * 19 18 17
21 21 O 1.21478 * 119.99965 * 180.02562 * 20 19 18
22 22 O 1.34707 * 120.00332 * 0.02718 * 20 19 18
23 23 C 1.39624 * 119.69920 * 359.70931 * 19 18 17
24 24 C 1.37946 * 119.84773 * 359.97438 * 23 19 18
25 25 N 1.28715 * 108.25962 * 0.41795 * 14 13 12
26 26 N 1.28632 * 110.18138 * 359.73745 * 25 14 13
27 27 H 0.96996 * 120.00505 * 359.97438 * 1 2 3
28 28 H 1.09001 * 109.46665 * 60.00499 * 9 7 2
29 29 H 1.08993 * 109.47304 * 300.00055 * 9 7 2
30 30 H 1.09001 * 109.46801 * 300.00442 * 10 9 7
31 31 H 1.09001 * 109.46998 * 60.00038 * 10 9 7
32 32 H 1.08996 * 109.46952 * 300.00302 * 11 10 9
33 33 H 1.09001 * 109.46832 * 60.00321 * 11 10 9
34 34 H 1.08001 * 126.91466 * 0.02562 * 13 12 11
35 35 H 1.08998 * 109.47121 * 245.29174 * 15 14 13
36 36 H 1.09002 * 109.47710 * 5.29534 * 15 14 13
37 37 H 1.08000 * 119.92473 * 359.97438 * 17 16 15
38 38 H 1.08006 * 120.07775 * 180.27123 * 18 17 16
39 39 H 0.96700 * 117.00333 * 179.97438 * 22 20 19
40 40 H 1.07998 * 120.08011 * 179.97438 * 23 19 18
41 41 H 1.08002 * 119.92652 * 180.02562 * 24 23 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.1028 1.6966 -1.2125
5 1 1.2840 2.7465 0.0006
6 1 3.1029 1.6964 1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0010
9 6 1.2511 -2.4991 -0.0005
10 6 2.2454 -3.6621 -0.0005
11 6 1.4805 -4.9871 -0.0012
12 6 2.4597 -6.1325 -0.0005
13 6 2.5160 -7.1493 0.8909
14 7 3.5433 -7.9380 0.4988
15 6 3.9825 -9.1683 1.1618
16 6 3.9985 -10.2981 0.1646
17 6 2.8685 -11.0766 -0.0123
18 6 2.8745 -12.1087 -0.9276
19 6 4.0283 -12.3745 -1.6677
20 6 4.0443 -13.4826 -2.6445
21 8 5.0497 -13.7117 -3.2866
22 8 2.9441 -14.2390 -2.8232
23 6 5.1669 -11.5886 -1.4800
24 6 5.1451 -10.5555 -0.5661
25 7 4.0714 -7.4188 -0.5539
26 7 3.4482 -6.3410 -0.8775
27 1 -0.4851 0.8400 0.0004
28 1 0.6242 -2.5567 -0.8904
29 1 0.6248 -2.5571 0.8896
30 1 2.8721 -3.6042 -0.8905
31 1 2.8721 -3.6043 0.8895
32 1 0.8535 -5.0450 0.8885
33 1 0.8542 -5.0446 -0.8914
34 1 1.8692 -7.3023 1.7422
35 1 4.9849 -9.0257 1.5654
36 1 3.2953 -9.4094 1.9729
37 1 1.9784 -10.8732 0.5645
38 1 1.9903 -12.7129 -1.0679
39 1 3.0025 -14.9522 -3.4735
40 1 6.0628 -11.7890 -2.0488
41 1 6.0250 -9.9465 -0.4202
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001254098722.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:29:32
Heat of formation + Delta-G solvation = -8.131872 kcal
Electronic energy + Delta-G solvation = -23925.717977 eV
Core-core repulsion = 20192.216768 eV
Total energy + Delta-G solvation = -3733.501209 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-44.15119 -41.52597 -39.97264 -37.20880 -36.86888 -35.81569 -34.39637 -32.73542
-32.15799 -31.93700 -28.98909 -28.40227 -25.58737 -25.05530 -23.87014 -22.91379
-22.59079 -21.98909 -21.16557 -19.25017 -18.69058 -18.48516 -17.99637 -17.61301
-16.76195 -16.52924 -16.32548 -16.15694 -15.97150 -15.58419 -15.33518 -14.94396
-14.63006 -14.31699 -14.25511 -13.85552 -13.69502 -13.55206 -13.27479 -13.00345
-12.70664 -12.67867 -12.61148 -12.45642 -12.31016 -12.16688 -11.84590 -11.77972
-11.43438 -11.30075 -11.11873 -10.91291 -10.50913 -10.18840 -10.08962 -9.95130
-8.16825 -6.26876 -0.59392 0.28004 0.72818 1.22434 1.40521 1.43742
1.51605 1.62426 1.74868 1.96187 2.43426 2.69633 3.15639 3.28313
3.51119 3.62669 3.86850 3.87389 3.99339 4.13866 4.21488 4.26847
4.37433 4.45702 4.48112 4.58578 4.65912 4.77776 4.84972 4.93370
5.09137 5.17959 5.21454 5.24225 5.26747 5.34491 5.38098 5.47818
5.57850 5.69861 5.76488 5.83810 5.91852 6.31578 6.85741 6.89024
7.41291 7.62757 8.94425
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.030646 B = 0.001866 C = 0.001863
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 913.453745 B =15000.891242 C =15025.377095
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.930 5.930
2 C 0.001 3.999
3 Si 0.961 3.039
4 H -0.272 1.272
5 H -0.279 1.279
6 H -0.267 1.267
7 C -0.546 4.546
8 H 0.052 0.948
9 C 0.025 3.975
10 C -0.087 4.087
11 C -0.026 4.026
12 C -0.034 4.034
13 C -0.028 4.028
14 N -0.283 5.283
15 C 0.147 3.853
16 C -0.082 4.082
17 C -0.108 4.108
18 C -0.064 4.064
19 C -0.136 4.136
20 C 0.531 3.469
21 O -0.549 6.549
22 O -0.502 6.502
23 C -0.071 4.071
24 C -0.101 4.101
25 N -0.112 5.112
26 N -0.312 5.312
27 H 0.264 0.736
28 H -0.008 1.008
29 H 0.004 0.996
30 H 0.034 0.966
31 H 0.044 0.956
32 H 0.100 0.900
33 H 0.067 0.933
34 H 0.239 0.761
35 H 0.127 0.873
36 H 0.164 0.836
37 H 0.164 0.836
38 H 0.158 0.842
39 H 0.434 0.566
40 H 0.135 0.865
41 H 0.144 0.856
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.783 -32.444 5.376 33.232
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.570 5.570
2 C -0.197 4.197
3 Si 0.786 3.214
4 H -0.197 1.197
5 H -0.205 1.205
6 H -0.192 1.192
7 C -0.584 4.584
8 H 0.070 0.930
9 C -0.012 4.012
10 C -0.125 4.125
11 C -0.065 4.065
12 C -0.172 4.172
13 C -0.178 4.178
14 N -0.077 5.077
15 C 0.028 3.972
16 C -0.083 4.083
17 C -0.126 4.126
18 C -0.082 4.082
19 C -0.138 4.138
20 C 0.376 3.624
21 O -0.442 6.442
22 O -0.316 6.316
23 C -0.089 4.089
24 C -0.120 4.120
25 N -0.091 5.091
26 N -0.178 5.178
27 H 0.073 0.927
28 H 0.011 0.989
29 H 0.022 0.978
30 H 0.053 0.947
31 H 0.063 0.937
32 H 0.119 0.881
33 H 0.085 0.915
34 H 0.255 0.745
35 H 0.145 0.855
36 H 0.182 0.818
37 H 0.182 0.818
38 H 0.176 0.824
39 H 0.297 0.703
40 H 0.153 0.847
41 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges 5.999 -32.268 4.432 33.119
hybrid contribution -0.208 0.587 -0.177 0.648
sum 5.791 -31.681 4.255 32.486
Atomic orbital electron populations
1.70066 1.07521 1.27762 1.51644 1.25925 0.95834 1.03094 0.94823
0.85561 0.78373 0.78443 0.79026 1.19696 1.20454 1.19167 1.21679
0.93303 0.92829 1.50565 0.93007 1.19018 0.94325 0.92571 0.95271
1.21301 0.97847 0.93600 0.99729 1.19887 0.94313 0.88829 1.03451
1.22305 0.99412 1.00090 0.95399 1.23988 0.96144 0.93200 1.04502
1.47657 1.21356 1.19582 1.19155 1.21495 1.06338 0.75994 0.93354
1.20179 0.94529 0.96007 0.97593 1.21444 0.98469 0.94360 0.98323
1.21680 0.97104 0.96558 0.92843 1.19289 0.97257 0.97252 0.99968
1.21029 0.80126 0.80989 0.80214 1.90893 1.35060 1.70314 1.47906
1.84504 1.38843 1.46199 1.62070 1.21351 0.97530 0.93468 0.96538
1.21233 0.99275 0.96486 0.94973 1.78182 1.21579 1.06117 1.03200
1.75046 1.08110 1.09502 1.25152 0.92735 0.98931 0.97787 0.94681
0.93695 0.88119 0.91461 0.74461 0.85544 0.81829 0.81834 0.82396
0.70338 0.84737 0.83823
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -57.09 13.29 21.45 0.28 -56.81 16
2 C 0.00 0.06 5.46 84.65 0.46 0.52 16
3 Si 0.96 45.46 29.54 68.60 2.03 47.49 16
4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16
5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16
6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16
7 C -0.55 -32.31 9.11 25.60 0.23 -32.08 16
8 H 0.05 3.01 7.74 -2.91 -0.02 2.98 16
9 C 0.03 1.36 4.97 29.85 0.15 1.51 16
10 C -0.09 -3.80 5.13 30.60 0.16 -3.64 16
11 C -0.03 -0.87 5.79 29.85 0.17 -0.69 16
12 C -0.03 -1.03 6.50 41.59 0.27 -0.76 16
13 C -0.03 -0.54 11.49 83.49 0.96 0.41 16
14 N -0.28 -5.45 3.43 -351.47 -1.21 -6.65 16
15 C 0.15 1.18 6.58 85.63 0.56 1.74 16
16 C -0.08 -0.92 5.26 -19.80 -0.10 -1.02 16
17 C -0.11 -1.00 9.68 22.23 0.22 -0.79 16
18 C -0.06 -0.73 9.62 22.54 0.22 -0.52 16
19 C -0.14 -2.18 5.87 -20.10 -0.12 -2.30 16
20 C 0.53 9.07 8.27 70.33 0.58 9.66 16
21 O -0.55 -13.03 17.13 19.91 0.34 -12.69 16
22 O -0.50 -5.07 12.68 -56.16 -0.71 -5.78 16
23 C -0.07 -1.17 9.60 22.54 0.22 -0.95 16
24 C -0.10 -1.43 9.68 22.23 0.22 -1.22 16
25 N -0.11 -3.33 12.92 37.02 0.48 -2.85 16
26 N -0.31 -11.29 12.40 -48.60 -0.60 -11.90 16
27 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16
28 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16
29 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16
30 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16
31 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16
32 H 0.10 2.82 8.12 -2.39 -0.02 2.80 16
33 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16
34 H 0.24 2.02 8.06 -2.91 -0.02 2.00 16
35 H 0.13 0.68 8.08 -2.39 -0.02 0.66 16
36 H 0.16 -0.15 8.01 -2.39 -0.02 -0.17 16
37 H 0.16 0.55 8.06 -2.91 -0.02 0.52 16
38 H 0.16 1.22 7.61 -2.91 -0.02 1.20 16
39 H 0.43 0.64 9.11 -74.06 -0.67 -0.03 16
40 H 0.13 2.30 7.65 -2.91 -0.02 2.28 16
41 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16
Total: -1.00 -85.69 365.24 5.18 -80.50
By element:
Atomic # 1 Polarization: -1.59 SS G_CDS: 0.38 Total: -1.21 kcal
Atomic # 6 Polarization: -34.30 SS G_CDS: 4.19 Total: -30.11 kcal
Atomic # 7 Polarization: -77.15 SS G_CDS: -1.05 Total: -78.20 kcal
Atomic # 8 Polarization: -18.09 SS G_CDS: -0.37 Total: -18.47 kcal
Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal
Total: -85.69 5.18 -80.50 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001254098722.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.371 kcal
(2) G-P(sol) polarization free energy of solvation -85.686 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.315 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.183 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.503 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.132 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds