Wall clock time and date at job start Tue Mar 31 2020 10:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00013 * 2 1 4 4 H 1.48503 * 109.47048 * 270.00219 * 3 2 1 5 5 H 1.48503 * 109.47153 * 29.99549 * 3 2 1 6 6 H 1.48497 * 109.47491 * 150.00111 * 3 2 1 7 7 C 1.37876 * 120.00351 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00171 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99851 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47489 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47397 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47370 * 180.02562 * 11 10 9 13 13 C 1.35354 * 126.75449 * 124.99592 * 12 11 10 14 14 N 1.35311 * 106.17595 * 179.97438 * 13 12 11 15 15 C 1.46501 * 125.86692 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46874 * 125.00284 * 15 14 13 17 17 C 1.37966 * 120.07639 * 97.24266 * 16 15 14 18 18 C 1.38346 * 120.14766 * 179.71905 * 17 16 15 19 19 C 1.38382 * 120.30498 * 0.55930 * 18 17 16 20 20 C 1.37923 * 120.14937 * 359.72151 * 19 18 17 21 21 C 1.39605 * 120.07560 * 277.52131 * 16 15 14 22 22 C 1.47728 * 120.14971 * 359.97438 * 21 16 15 23 23 O 1.21462 * 119.99949 * 5.60191 * 22 21 16 24 24 O 1.34719 * 119.99592 * 185.59829 * 22 21 16 25 25 N 1.28723 * 108.26369 * 0.27001 * 14 13 12 26 26 N 1.28631 * 110.17699 * 359.55415 * 25 14 13 27 27 H 0.96998 * 120.00497 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46884 * 60.00230 * 9 7 2 29 29 H 1.09001 * 109.47057 * 300.00294 * 9 7 2 30 30 H 1.09002 * 109.46891 * 60.00209 * 10 9 7 31 31 H 1.09001 * 109.47191 * 300.00187 * 10 9 7 32 32 H 1.09002 * 109.47017 * 60.00179 * 11 10 9 33 33 H 1.09000 * 109.47464 * 299.99906 * 11 10 9 34 34 H 1.07999 * 126.90884 * 359.96467 * 13 12 11 35 35 H 1.09001 * 109.47270 * 5.00604 * 15 14 13 36 36 H 1.08997 * 109.47233 * 244.99770 * 15 14 13 37 37 H 1.08000 * 119.92273 * 0.02562 * 17 16 15 38 38 H 1.08001 * 119.84320 * 180.26010 * 18 17 16 39 39 H 1.08000 * 119.92470 * 179.74157 * 19 18 17 40 40 H 1.08008 * 120.07754 * 179.97438 * 20 19 18 41 41 H 0.96703 * 116.99241 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4596 -6.1325 -0.0005 13 6 2.5125 -7.1524 0.8878 14 7 3.5429 -7.9383 0.4986 15 6 3.9830 -9.1679 1.1623 16 6 3.9980 -10.2987 0.1662 17 6 5.1763 -10.6565 -0.4559 18 6 5.1930 -11.6980 -1.3663 19 6 4.0275 -12.3804 -1.6680 20 6 2.8415 -12.0294 -1.0578 21 6 2.8186 -10.9828 -0.1335 22 6 1.5520 -10.6016 0.5245 23 8 1.5136 -9.6282 1.2500 24 8 0.4398 -11.3336 0.3198 25 7 4.0740 -7.4165 -0.5515 26 7 3.4474 -6.3417 -0.8782 27 1 -0.4851 0.8400 -0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.8719 -3.6043 0.8895 31 1 2.8720 -3.6043 -0.8905 32 1 0.8540 -5.0445 -0.8914 33 1 0.8533 -5.0451 0.8886 34 1 1.8630 -7.3075 1.7366 35 1 3.2966 -9.4082 1.9743 36 1 4.9859 -9.0248 1.5646 37 1 6.0887 -10.1254 -0.2280 38 1 6.1190 -11.9767 -1.8473 39 1 4.0468 -13.1898 -2.3828 40 1 1.9325 -12.5625 -1.2944 41 1 -0.3648 -11.0453 0.7722 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254101138.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:35 Heat of formation + Delta-G solvation = 0.406401 kcal Electronic energy + Delta-G solvation = -25020.903751 eV Core-core repulsion = 21287.772789 eV Total energy + Delta-G solvation = -3733.130962 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.18402 -41.64426 -39.76887 -37.36415 -36.81957 -35.69990 -34.39119 -32.55689 -32.44591 -31.96469 -28.89535 -28.14082 -25.63707 -25.50916 -23.66820 -22.88190 -22.69686 -22.01222 -21.08323 -19.21871 -18.66919 -18.43535 -18.01638 -17.53218 -16.84843 -16.54734 -16.47810 -16.20099 -15.96379 -15.49435 -15.42441 -15.00245 -14.42484 -14.39010 -14.25155 -13.79024 -13.70260 -13.62585 -13.29230 -12.87775 -12.78655 -12.66435 -12.62145 -12.46458 -12.35858 -12.29070 -11.85014 -11.49318 -11.38327 -11.31464 -11.13586 -10.91927 -10.52988 -10.15983 -10.06787 -9.94054 -8.18195 -6.28671 -0.49248 0.14332 0.72506 1.39431 1.41621 1.44277 1.52685 1.59071 1.63823 1.97588 2.42554 2.71433 3.14201 3.25153 3.49781 3.57797 3.87343 3.97375 4.02129 4.12298 4.21803 4.23584 4.37896 4.42612 4.44121 4.55862 4.69212 4.73884 4.83327 4.89416 5.14037 5.15531 5.18332 5.22388 5.32142 5.35796 5.37761 5.51819 5.55546 5.73843 5.77699 5.80313 5.89063 6.29500 6.87013 6.87106 7.39618 7.59285 8.93662 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025652 B = 0.002413 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.282273 B =11598.909575 C =12233.240849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.053 0.947 9 C 0.026 3.974 10 C -0.084 4.084 11 C -0.023 4.023 12 C -0.038 4.038 13 C -0.010 4.010 14 N -0.272 5.272 15 C 0.144 3.856 16 C -0.068 4.068 17 C -0.106 4.106 18 C -0.081 4.081 19 C -0.119 4.119 20 C -0.069 4.069 21 C -0.134 4.134 22 C 0.523 3.477 23 O -0.530 6.530 24 O -0.505 6.505 25 N -0.110 5.110 26 N -0.304 5.304 27 H 0.264 0.736 28 H -0.007 1.007 29 H 0.001 0.999 30 H 0.043 0.957 31 H 0.039 0.961 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.210 0.790 35 H 0.141 0.859 36 H 0.125 0.875 37 H 0.148 0.852 38 H 0.162 0.838 39 H 0.164 0.836 40 H 0.153 0.847 41 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.168 -34.267 2.351 35.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.071 0.929 9 C -0.011 4.011 10 C -0.122 4.122 11 C -0.063 4.063 12 C -0.177 4.177 13 C -0.161 4.161 14 N -0.065 5.065 15 C 0.025 3.975 16 C -0.069 4.069 17 C -0.124 4.124 18 C -0.099 4.099 19 C -0.137 4.137 20 C -0.087 4.087 21 C -0.136 4.136 22 C 0.369 3.631 23 O -0.422 6.422 24 O -0.319 6.319 25 N -0.089 5.089 26 N -0.171 5.171 27 H 0.073 0.927 28 H 0.012 0.988 29 H 0.019 0.981 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.227 0.773 35 H 0.159 0.841 36 H 0.142 0.858 37 H 0.166 0.834 38 H 0.180 0.820 39 H 0.181 0.819 40 H 0.170 0.830 41 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 8.476 -34.201 1.304 35.260 hybrid contribution -1.307 1.329 1.090 2.160 sum 7.168 -32.872 2.394 33.730 Atomic orbital electron populations 1.70083 1.07630 1.27762 1.51711 1.25957 0.95841 1.03218 0.94726 0.85462 0.78637 0.78523 0.78513 1.19814 1.20236 1.19053 1.21691 0.93333 0.92707 1.50550 0.92903 1.19013 0.94287 0.92628 0.95193 1.21286 0.97843 0.93249 0.99850 1.19858 0.94265 0.89084 1.03055 1.22235 0.99906 0.99947 0.95580 1.23607 0.95745 0.92594 1.04196 1.47341 1.20962 1.19037 1.19192 1.21422 1.04675 0.77083 0.94337 1.19827 0.93436 0.95498 0.98131 1.21352 0.97472 0.97531 0.96052 1.21873 1.00128 0.93142 0.94759 1.21670 0.91611 1.00728 0.99707 1.21715 1.00346 0.93813 0.92847 1.19116 0.90278 1.01449 1.02709 1.21043 0.84690 0.79487 0.77921 1.90809 1.85800 1.27670 1.37905 1.84491 1.21285 1.56178 1.69939 1.78108 1.21572 1.06264 1.02914 1.74980 1.07912 1.09597 1.24621 0.92693 0.98823 0.98084 0.93832 0.94226 0.91355 0.88994 0.77296 0.84147 0.85750 0.83378 0.82034 0.81883 0.82953 0.70356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.58 13.29 21.45 0.28 -58.29 16 2 C 0.00 0.01 5.46 84.66 0.46 0.47 16 3 Si 0.96 46.43 29.54 68.60 2.03 48.46 16 4 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.54 -33.21 9.11 25.60 0.23 -32.98 16 8 H 0.05 3.16 7.74 -2.91 -0.02 3.13 16 9 C 0.03 1.46 4.97 29.85 0.15 1.61 16 10 C -0.08 -3.96 5.13 30.59 0.16 -3.81 16 11 C -0.02 -0.91 5.79 29.85 0.17 -0.74 16 12 C -0.04 -1.42 6.50 41.60 0.27 -1.15 16 13 C -0.01 -0.30 9.75 83.49 0.81 0.51 16 14 N -0.27 -7.50 3.27 -351.46 -1.15 -8.65 16 15 C 0.14 2.60 5.73 85.63 0.49 3.09 16 16 C -0.07 -1.14 5.29 -19.60 -0.10 -1.24 16 17 C -0.11 -1.38 9.66 22.23 0.21 -1.16 16 18 C -0.08 -0.74 10.04 22.33 0.22 -0.52 16 19 C -0.12 -1.04 10.03 22.23 0.22 -0.81 16 20 C -0.07 -0.84 9.62 22.54 0.22 -0.62 16 21 C -0.13 -2.23 5.87 -20.10 -0.12 -2.34 16 22 C 0.52 9.09 8.21 70.33 0.58 9.66 16 23 O -0.53 -11.10 11.51 19.96 0.23 -10.87 16 24 O -0.50 -5.87 12.70 -56.29 -0.71 -6.59 16 25 N -0.11 -3.79 12.93 37.02 0.48 -3.31 16 26 N -0.30 -12.32 12.40 -48.59 -0.60 -12.93 16 27 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 28 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 29 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 30 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.09 3.17 8.12 -2.39 -0.02 3.15 16 34 H 0.21 5.07 7.44 -2.91 -0.02 5.05 16 35 H 0.14 2.29 5.85 -2.39 -0.01 2.27 16 36 H 0.12 1.63 8.03 -2.39 -0.02 1.62 16 37 H 0.15 1.54 8.05 -2.91 -0.02 1.52 16 38 H 0.16 0.56 8.06 -2.91 -0.02 0.53 16 39 H 0.16 0.44 8.06 -2.91 -0.02 0.42 16 40 H 0.15 1.38 7.63 -2.91 -0.02 1.36 16 41 H 0.43 1.60 9.11 -74.06 -0.67 0.93 16 Total: -1.00 -81.98 355.23 4.93 -77.06 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: 0.39 Total: 5.15 kcal Atomic # 6 Polarization: -34.02 SS G_CDS: 3.98 Total: -30.03 kcal Atomic # 7 Polarization: -82.18 SS G_CDS: -0.99 Total: -83.17 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.48 Total: -17.46 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -81.98 4.93 -77.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254101138.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.463 kcal (2) G-P(sol) polarization free energy of solvation -81.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds